BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_009004	1,681,037	T→C	E332G (GAA→GGA)	pepV ←	dipeptidase PepV

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_009004	1,681,037	0	T	C	99.8%	2252.9 / NA	556	E332G (GAA→GGA)	pepV	dipeptidase PepV
Reads supporting (aligned to +/- strand): ref base T (0/0); major base C (228/327); minor base A (0/1); total (228/328)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 567 total aligned reads displayed.

TTCAACTTCAACAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTTCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCTCCAT  >  NC_009004/1680892‑1681181

ttcaacttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTccc                                                                                                                                                <  1:9027254/148‑1 (MQ=255)

ttcaacttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTccc                                                                                                                                                >  1:11107593/1‑148 (MQ=255)

ttcaacttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTccc                                                                                                                                                <  1:416351/148‑1 (MQ=255)

 tcaacttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCa                                                                                                                                               <  1:2933256/148‑1 (MQ=255)

  caacttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCAt                                                                                                                                              <  1:6190142/148‑1 (MQ=255)

  caacttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCAt                                                                                                                                              <  1:8615767/148‑1 (MQ=255)

    acttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCa                                                                                                                                            >  1:9606868/1‑148 (MQ=255)

    acttcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCa                                                                                                                                            >  1:1198985/1‑148 (MQ=255)

       tcaacAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCaaagtcg                                                                                                                                         >  1:5613472/1‑142 (MQ=255)

           caacCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATtcatc                                                                                                                                     >  1:9696359/1‑148 (MQ=255)

           caacCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATtcatc                                                                                                                                     <  1:1972231/148‑1 (MQ=255)

           caacCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATtcatc                                                                                                                                     <  1:304113/148‑1 (MQ=255)

            aacCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATtcatca                                                                                                                                    <  1:278818/148‑1 (MQ=255)

               cccATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGTGGTATTTCCCATCAATTCATcaaca                                                                                                                                 >  1:7173541/1‑148 (MQ=255)

                    cAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGc                                                                                                                            <  1:5694204/148‑1 (MQ=255)

                     aaGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCt                                                                                                                           <  1:11293799/148‑1 (MQ=255)

                      aGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTg                                                                                                                          >  1:8486049/1‑148 (MQ=255)

                       gTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGt                                                                                                                         <  1:4049870/148‑1 (MQ=255)

                        tttAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTa                                                                                                                        <  1:10578370/148‑1 (MQ=255)

                        tttAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTa                                                                                                                        >  1:3612256/1‑148 (MQ=255)

                           aGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCt                                                                                                                     >  1:1594142/1‑148 (MQ=255)

                            gCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTa                                                                                                                    >  1:3819605/1‑148 (MQ=255)

                             cAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTaa                                                                                                                   <  1:6835556/148‑1 (MQ=255)

                             cAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTaa                                                                                                                   <  1:9170770/148‑1 (MQ=255)

                             cAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTaa                                                                                                                   >  1:2097609/1‑148 (MQ=255)

                             cAAGAATTCCTTGCATCCGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTaa                                                                                                                   <  1:9958380/148‑1 (MQ=255)

                              aaGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAAt                                                                                                                  <  1:2467704/148‑1 (MQ=255)

                               aGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAAtt                                                                                                                 >  1:5897676/1‑148 (MQ=255)

                                 aaTTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAAtttt                                                                                                               <  1:7321431/148‑1 (MQ=255)

                                 aaTTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAAtttt                                                                                                               >  1:9355794/1‑148 (MQ=255)

                                   tttCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTc                                                                                                             <  1:1059720/148‑1 (MQ=255)

                                   tttCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTc                                                                                                             <  1:10383096/148‑1 (MQ=255)

                                    ttCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCa                                                                                                            <  1:3526372/148‑1 (MQ=255)

                                     tCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCAc                                                                                                           <  1:5011413/148‑1 (MQ=255)

                                     tCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCAc                                                                                                           <  1:168399/148‑1 (MQ=255)

                                      cTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCAcc                                                                                                          <  1:7939091/148‑1 (MQ=255)

                                       ttGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCt                                                                                                         <  1:6066552/148‑1 (MQ=255)

                                       ttGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCt                                                                                                         >  1:10163107/1‑148 (MQ=255)

                                       ttGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCCATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCt                                                                                                         >  1:459946/1‑148 (MQ=255)

                                        tGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCtt                                                                                                        >  1:11539145/1‑148 (MQ=255)

                                         gCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTc                                                                                                       <  1:84064/148‑1 (MQ=255)

                                         gCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTc                                                                                                       <  1:8167269/148‑1 (MQ=255)

                                             aCGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGa                                                                                                   <  1:9567925/148‑1 (MQ=255)

                                                ctctGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCt                                                                                                <  1:6367759/148‑1 (MQ=255)

                                                 tctGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCtt                                                                                               >  1:6786422/1‑148 (MQ=255)

                                                 tctGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCtt                                                                                               >  1:9259766/1‑148 (MQ=255)

                                                      gCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCaaga                                                                                          <  1:10042031/148‑1 (MQ=255)

                                                      gCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCaaga                                                                                          <  1:7541693/148‑1 (MQ=255)

                                                       cTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCaagaa                                                                                         >  1:10911005/1‑148 (MQ=255)

                                                       cTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCaagaa                                                                                         >  1:6313498/1‑148 (MQ=255)

                                                            cgcTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCAGCATTTTCATCAAATGACCATACACCAGCATTCATTGAGGTATTTACCATCAATTCATCAGCAAAAGCTGTACCTAATTTTTCACCTTCATGATTTTCAAGAAGtttt                                                                                    <  1:1383724/146‑1 (MQ=255)

                                                             ccTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGttttt                                                                                   >  1:7390035/1‑148 (MQ=255)

                                                                    ggAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATCCATTGAGGTATTTCGCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTCCAAGAAGTTTTTCAGcccc                                                                            <  1:3251616/148‑1 (MQ=255)

                                                                      aaaCGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCaa                                                                          >  1:8862647/1‑148 (MQ=255)

                                                                      aaaCGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCaa                                                                          <  1:6573128/148‑1 (MQ=255)

                                                                        aCGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACt                                                                        >  1:4483626/1‑148 (MQ=255)

                                                                         cGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACtt                                                                       <  1:6932318/148‑1 (MQ=255)

                                                                               ttGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGa                                                                 <  1:7746112/148‑1 (MQ=255)

                                                                                tGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGaa                                                                <  1:2276241/148‑1 (MQ=255)

                                                                                 gAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCGCAACTTTAATGAAg                                                               <  1:5129922/148‑1 (MQ=255)

                                                                                    ggCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGgca                                                            <  1:8363545/148‑1 (MQ=255)

                                                                                    ggCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGgca                                                            >  1:1314555/1‑148 (MQ=255)

                                                                                     gCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGgcag                                                           >  1:11016254/1‑148 (MQ=255)

                                                                                     gCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGgcag                                                           <  1:5287835/148‑1 (MQ=255)

                                                                                             aCCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCg                                                   <  1:7030367/148‑1 (MQ=255)

                                                                                              ccTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGt                                                  <  1:3896373/148‑1 (MQ=255)

                                                                                               cTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTc                                                 >  1:2178264/1‑148 (MQ=255)

                                                                                                ttCACCATTTTCATCAAATGACCATACTCCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACTAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCa                                                <  1:11425716/148‑1 (MQ=255)

                                                                                                 tCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAg                                               <  1:9641530/148‑1 (MQ=255)

                                                                                                 tCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAg                                               <  1:6657555/148‑1 (MQ=255)

                                                                                                  cACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGc                                              <  1:9085266/148‑1 (MQ=255)

                                                                                                  cACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGc                                              >  1:946206/1‑148 (MQ=255)

                                                                                                   aCCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCa                                             >  1:8317767/1‑148 (MQ=255)

                                                                                                     cATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCaaa                                           <  1:2607756/148‑1 (MQ=255)

                                                                                                      aTTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAg                                          <  1:869286/148‑1 (MQ=255)

                                                                                                      aTTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAg                                          <  1:1862308/148‑1 (MQ=255)

                                                                                                        tttCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTc                                        >  1:11509500/1‑148 (MQ=255)

                                                                                                         ttCATCAATTGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCa                                       <  1:4722493/148‑1 (MQ=255)

                                                                                                          tcatcaAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCaa                                      >  1:2853322/1‑148 (MQ=255)

                                                                                                           catcaAATGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCaaa                                     >  1:314096/1‑148 (MQ=255)

                                                                                                               aaaTGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGa                                 <  1:7134717/148‑1 (MQ=255)

                                                                                                                  tGACCAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTc                              >  1:4413583/1‑148 (MQ=255)

                                                                                                                     ccAAACACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAg                           >  1:3370406/1‑148 (MQ=255)

                                                                                                                       aaaCACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGaa                         >  1:3432966/1‑148 (MQ=255)

                                                                                                                        aaCACCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAAc                        <  1:5450770/148‑1 (MQ=255)

                                                                                                                         acacCAGCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACa                       <  1:2533890/148‑1 (MQ=255)

                                                                                                                               gCATTCATTGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTaa                 >  1:3730844/1‑148 (MQ=255)

                                                                                                                                cattcattGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGTAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAg                >  1:8542337/1‑148 (MQ=255)

                                                                                                                                cattcattGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGGCAAATTGATTCAAGAACAAAGTAAg                >  1:9761341/1‑148 (MQ=255)

                                                                                                                                  ttcattGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGAt              <  1:7083931/148‑1 (MQ=255)

                                                                                                                                   tcattGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATa             >  1:10757308/1‑148 (MQ=255)

                                                                                                                                     attGAGGTATTTCCCAACAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAg           <  1:5089897/148‑1 (MQ=255)

                                                                                                                                      ttGAGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGt          >  1:10492326/1‑148 (MQ=255)

                                                                                                                                         aGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGc       <  1:488462/148‑1 (MQ=255)

                                                                                                                                         aGGTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGc       <  1:4298667/148‑1 (MQ=255)

                                                                                                                                          ggTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTCCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCt      <  1:10302654/148‑1 (MQ=255)

                                                                                                                                           gTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCTc     >  1:11198120/1‑148 (MQ=255)

                                                                                                                                           gTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCTc     <  1:3088659/148‑1 (MQ=255)

                                                                                                                                           gTATTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCTc     >  1:10227457/1‑148 (MQ=255)

                                                                                                                                             aTTTCCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCTCCa   >  1:5549675/1‑148 (MQ=255)

TTCAACTTCAACAACCCCATCAAGTTTAGCAAGAATTTCTTGCATACGCTCTGGGCTGTTCCCTTGTGGGAAACGGAAATTGAGGGCGATTTTACCTTCACCATTTTCATCAAATGACCAAACACCAGCATTCATTGAGGTATTTTCCATCAATTCATCAACAAAAGCTGTACCTAATTTTTCACCTTCATGATCTTCAAGAAGTTTTTCAGCCCCAACTTTAATGAAGGCAGCAGCACCGTCAGCAAAGTCAAATTGATTCAAGAACAAAGTAAGATAAGTTGCTCCAT  >  NC_009004/1680892‑1681181

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`