Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0092733,774,3980TA23.4% 434.2 / 25.8 197intergenic (+21/‑177)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base T (32/99);  new base A (40/0);  total (97/100)
Fisher's exact test for biased strand distribution p-value = 1.59e-19
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 198 total aligned reads displayed.

ATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGC  >  CP009273/3774249‑3774546
                                                                                                                                                     |                                                                                                                                                    
    aaGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGAACCCAAAca                                                                                                                                                  >  2:406460/1‑149 (MQ=255)
     aGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCGAAacc                                                                                                                                                 >  2:1343821/1‑150 (MQ=255)
     aGTGGAGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCTAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAAccc                                                                                                                                                 <  2:2278735/150‑1 (MQ=255)
      gTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCct                                                                                                                                                <  1:3258698/150‑1 (MQ=255)
       tGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGACTGCGGCATAGTCGTGTGCGCCCCCGCACCCGAAACctc                                                                                                                                               >  2:4814700/1‑150 (MQ=255)
       tGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCACCCGAAcccaa                                                                                                                                               >  2:4814476/1‑148 (MQ=255)
        ggCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGTGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCAAACACTAAcccaca                                                                                                                                              >  2:348619/1‑147 (MQ=255)
        ggCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCACACCCTAAcccaca                                                                                                                                              >  1:1330556/1‑147 (MQ=255)
          cGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTcc                                                                                                                                            <  1:3169928/150‑1 (MQ=255)
            aTGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCCCCCCAAACCCCAcccc                                                                                                                                          >  1:2990547/1‑149 (MQ=255)
              gACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCa                                                                                                                                        <  2:4719139/150‑1 (MQ=255)
              gACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCa                                                                                                                                        <  1:2790486/150‑1 (MQ=255)
                cGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCGACCCAAACCCACTCCCACAgg                                                                                                                                      >  1:5217257/1‑150 (MQ=255)
                  cTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGTGGCTGGGTAAAGAGTTTCCTGCGGCACTGGCTCCCATGGCGAATGGGACTGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTAACCCTAAgggg                                                                                                                                    >  2:1979234/1‑149 (MQ=255)
                    gACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCTTAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGgaga                                                                                                                                  <  1:3333309/150‑1 (MQ=255)
                    gACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGgaga                                                                                                                                  <  2:2830724/150‑1 (MQ=255)
                    gACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGgaga                                                                                                                                  <  1:706244/150‑1 (MQ=255)
                     aCTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGagag                                                                                                                                 <  1:2124708/150‑1 (MQ=255)
                      cTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAgg                                                                                                                                <  1:188402/150‑1 (MQ=255)
                             gAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCGCACCCAAACCCACTCCCGCCGGGCGAGGGGCCCGt                                                                                                                         >  2:4013036/1‑150 (MQ=255)
                               aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCGAACCCACAACCACACGGGGAGGGGACCGTTc                                                                                                                       >  1:4087193/1‑150 (MQ=255)
                               aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACAACCAAAAACACAAACCCAGGGGGAGGGGAcccgta                                                                                                                       >  1:207133/1‑146 (MQ=255)
                               aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCTCACCCAAACCCTCTCCCTCAGGGAGAGGGGGCCCttg                                                                                                                       >  2:4005892/1‑149 (MQ=255)
                               aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCACCCAAAACCACAACCACACGGAGAGGGGACCCtta                                                                                                                       >  1:5320435/1‑149 (MQ=255)
                               aaTCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCACACCCAAACCCTCTCCCACAGGGAGAGGGGACCCTTc                                                                                                                       >  2:3095001/1‑150 (MQ=255)
                                  cGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGgc                                                                                                                    <  2:376764/150‑1 (MQ=255)
                                  cGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCGCACCCAAACCCACTCCCTCAGGGAGAGGGGACCGGTGGgc                                                                                                                    >  2:3725212/1‑150 (MQ=255)
                                   gATCAGCGATATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGACGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGCTCGgcg                                                                                                                   <  2:2728308/150‑1 (MQ=255)
                                   gATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCGCCCTAAACCTCTCCCTAAGGGAGAGGGGACCGTTCGgcg                                                                                                                   >  2:802748/1‑150 (MQ=255)
                                      cAGCGAAATTACGCAAGTTTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGATAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCTTAGCCACTCCCGCAGGGCGAGGGGACCGTTCGgcgcgg                                                                                                                >  2:1014880/1‑148 (MQ=255)
                                         cGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat                                                                                                             <  1:457915/150‑1 (MQ=255)
                                         cGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCtgtat                                                                                                             <  1:1607894/150‑1 (MQ=255)
                                         cGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCGAACCCACACCCTCAGGGAGGGGGGACCGTTCGGCGCtgtat                                                                                                             >  1:3586322/1‑150 (MQ=255)
                                           aaaTTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCGAAACCACTCCCTCAGGGGGTGGGGGCCCTTCGGGGCtgtatgt                                                                                                           >  2:939768/1‑150 (MQ=255)
                                                aCGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTcc                                                                                                      <  1:4688843/150‑1 (MQ=255)
                                                aCGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCACCCCCAAACCAAACCCCCCGGGAGAGGGGGCCCGTCGGCGCggtatttaaaac                                                                                                      >  1:515173/1‑146 (MQ=255)
                                                aCGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCAGGGCGCAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTcc                                                                                                      <  2:4483498/150‑1 (MQ=255)
                                                  gccaGATTCGCGGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCCTGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCt                                                                                                    <  2:3204920/147‑1 (MQ=255)
                                                  gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCTAACCCTCACCCACAGGGAGAGGGGACCGGTCGGCGCTGTATGTAATccca                                                                                                    >  2:5442430/1‑149 (MQ=255)
                                                  gCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCAAAAACCTCTACCACAGGGAGCGGGGACCGTTCGGGGCTGGATGTACTacca                                                                                                    >  2:5322939/1‑149 (MQ=255)
                                                     agagTCGCGGGTGCAGGGGCGGGGTACAGAGGGGCCGGCGGCACTGGCTCCCCTGGCGAACGGGAATGCGGCAGCGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCCGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAc                                                                                                 <  2:76673/150‑1 (MQ=255)
                                                     aGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCACACCCGAACCCAAACCCCCAGGGGGAGGGGACCCGTCGGCCGGGTATGTACGCCCCCAc                                                                                                 >  2:4364590/1‑150 (MQ=255)
                                                      gATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCAct                                                                                                <  2:4134244/150‑1 (MQ=255)
                                                        ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActct                                                                                              <  1:4789216/150‑1 (MQ=255)
                                                        ttCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCActct                                                                                              <  2:3324659/150‑1 (MQ=255)
                                                          cGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCAGGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGa                                                                                            <  2:305423/150‑1 (MQ=255)
                                                            cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                                                                                          <  2:2376699/150‑1 (MQ=255)
                                                            cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                                                                                          <  2:805626/150‑1 (MQ=255)
                                                            cTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGaaa                                                                                          <  2:4278971/150‑1 (MQ=255)
                                                             tGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCTAACCCTCACCCGCAGGGAGAGGGGACCCGTCGGCGCTGTATGTACTCCCACCCACTGAAAc                                                                                         >  2:2616951/1‑150 (MQ=255)
                                                               gTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGa                                                                                       <  1:2504159/150‑1 (MQ=255)
                                                                tGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGac                                                                                      <  2:1659574/150‑1 (MQ=255)
                                                                 gCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCAGGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCAACCAAACCCAAAACCGCCGGGGGGGGGGACCCGTCGGCGCGGTTTGTAGTGCCGAACTGTGAAAAGacc                                                                                     >  1:2642230/1‑149 (MQ=255)
                                                                  cAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCCCACCCAAAACCACAACCACAGGGTGTGGGGGCCCGTGGGGGCGGGGTGTTCTCCCCCCCGCGGTAACGacac                                                                                    >  1:1081557/1‑150 (MQ=255)
                                                                  cAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGacac                                                                                    <  2:584588/150‑1 (MQ=255)
                                                                    ggggCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCAAACCCACTCCCACAGGGAGAGGGGACCGGTGGGCGCTGTTTGTTAAGCCGCACACTGAAACCCCAccc                                                                                  >  2:2819676/1‑149 (MQ=255)
                                                                       gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc                                                                               <  1:1229264/150‑1 (MQ=255)
                                                                       gCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCAc                                                                               <  1:5295219/150‑1 (MQ=255)
                                                                           ggTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCtt                                                                           <  2:44557/150‑1 (MQ=255)
                                                                              aaaGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTGTGCGCCCCCCCACCCAAACCCGCGCCCACAGGGAGAGGGGACCGATCGGCGCGGTATGTACACCCACACTCTGAAACCACAACCCACTCttttt                                                                        >  2:1184540/1‑150 (MQ=255)
                                                                                agagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCttttttt                                                                      <  1:5222777/150‑1 (MQ=255)
                                                                                 gagTTGCCTGCGGCACTGGCTCCCATGGCGACAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtc                                                                     <  2:3614020/150‑1 (MQ=255)
                                                                                 gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtc                                                                     <  2:4936629/150‑1 (MQ=255)
                                                                                 gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTtc                                                                     <  2:3995194/150‑1 (MQ=255)
                                                                                 gagTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCAAAACCACGACCCCAGGGGGGGGGGGCCGGTAGGCGCTGGAATTACTCCCTCCCACGGAAAAGAGACCGCACGCTTTTTTtc                                                                     >  1:4053032/1‑150 (MQ=255)
                                                                                   gTTGCCTGCGGCACTGGCTCCCATGGCGTAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCCAACCCGCGACCACAGGGGGGGGGGGCCGGTCGGGGGGGGGTGTGCTGCCGCACTCTGGAACGTCACCGCAATAattttttgta                                                                   >  1:867402/1‑147 (MQ=255)
                                                                                   gTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCACACCCCAACCCAAACCCACCGGGCGGGGGGGCCCGTGGGCGCGGTATGTAAAACCACAAACGGAAAACACACCGCCCAAtttttttata                                                                   >  1:3876708/1‑147 (MQ=255)
                                                                                      gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCt                                                                <  1:1420307/150‑1 (MQ=255)
                                                                                      gCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCAAACCCAATCCCACAGGGCGAGGGGACAGGTAGGCCCGGTATGTACTCCCGCACACTGAAAAGACACCGCACACTTTTTTTATccca                                                                >  2:1309014/1‑149 (MQ=255)
                                                                                      cgcTGCGGCACTGGCTCCCATGGCGAAAGGGAAATCGGCATAGTCGATTGCTCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCCTTCGGCGCTGTATGTACTCCCCCACTCAGAAACGACACCGCACTCTTTTTTTCTCCCt                                                                <  2:2510326/148‑1 (MQ=255)
                                                                                       ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTACCCCTCTCCCTCAGGGAGAGGGGACCGTTCTGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTc                                                               <  2:2585535/150‑1 (MQ=255)
                                                                                       ccTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTGCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTc                                                               <  2:4583937/150‑1 (MQ=255)
                                                                                         tGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCTAACCCACTCCCACAGGGAGAGGGGACCGTTAGGCGCTGTATGTAAACCCACACACAGAAAAGAAACCGCACTCTTTTTTTATCCCTCGc                                                             >  2:4869866/1‑150 (MQ=255)
                                                                                          gCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCAAAACCACTACCACAGGGAGTGGGGGCCCTTAGGCGCTGTTTTTACTCCCGCACACTGAAACGACCCCGCACTCTTTTTTTGTACCTCGcc                                                            >  2:2972642/1‑150 (MQ=255)
                                                                                           cGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTGGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTC‑TTTTTTCTCCCTCGcccc                                                          <  2:4557073/150‑1 (MQ=255)
                                                                                            ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcccc                                                          <  2:1301788/150‑1 (MQ=255)
                                                                                            ggCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGcccc                                                          <  1:4221911/150‑1 (MQ=255)
                                                                                               aCTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTcc                                                       <  1:2052442/150‑1 (MQ=255)
                                                                                                   gCTCCCCTGGCGCAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACGCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCgggg                                                   <  2:4340778/150‑1 (MQ=255)
                                                                                                    cTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGga                                                  <  2:5399632/150‑1 (MQ=255)
                                                                                                     tCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACTACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGgat                                                 <  1:2557975/150‑2 (MQ=255)
                                                                                                      cccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGgaga                                                <  2:2963013/150‑1 (MQ=255)
                                                                                                      cccATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCGCACCCGAAACCGCTCCCTCACGGAGCGGGGACCGTTCGGGGCGGTATGGTCTACCTCACTAGGTAACGACACCGCGCTCTTTTTTTGTACCTCGCCCCGCCggggggg                                                >  2:3448721/1‑147 (MQ=255)
                                                                                                            gCGAAAGGGAATGCGGCATAGTCGTTTTCGCCCCCTAACCCTAAACCACTACCACAAGGAGTGGGGCCCCTTAGGCGCGGTATGTAATCCCACAATAGGGAAAGTCAACGCACAATTTTTTTATCCCACGCCCCAACGGGGGGGTGGCCg                                          >  2:1885401/1‑150 (MQ=255)
                                                                                                                caGGGAATGCGGCATAGTCGTTTGCGCCCCCCCACCCCAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt                                      <  1:1745552/149‑1 (MQ=255)
                                                                                                                aaGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGt                                      <  1:4911055/150‑1 (MQ=255)
                                                                                                                        gCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                              <  2:2157885/150‑1 (MQ=255)
                                                                                                                          ggCATAGTCGATTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaaaa                            <  1:2112737/150‑1 (MQ=255)
                                                                                                                                   gTTTGCGCCCCCTCACCCTAACCCTCTCCCACAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGGGAGGGGAAAAGGCCGCACt                   >  1:5391398/1‑150 (MQ=255)
                                                                                                                                       gcgcCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTc               >  1:5009426/1‑150 (MQ=255)
                                                                                                                                          cccccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCAcc            >  2:2377830/1‑150 (MQ=255)
                                                                                                                                            cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGACACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCCCTGCTCACCaa          >  2:3892815/1‑150 (MQ=255)
                                                                                                                                            cccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCACTCCGGGGCGAGGGCCGGGGTGAGGGGCAAAGGCCGCACTGCTCACCaa          >  2:669951/1‑150 (MQ=255)
                                                                                                                                             ccTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAt         >  2:868528/1‑150 (MQ=255)
                                                                                                                                              cTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAtt        >  1:3379320/1‑150 (MQ=255)
                                                                                                                                               tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAATAGGCCGCACTGCTCACCAAgtt       >  1:4640102/1‑150 (MQ=255)
                                                                                                                                               tCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt       >  1:4502309/1‑150 (MQ=255)
                                                                                                                                                cACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAATGGCCGCACTGCTCACCAAtttg      >  2:4968994/1‑149 (MQ=255)
                                                                                                                                                  cccTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGACAAGGCCGCACTGCTCACCAATTTTCt    >  1:565873/1‑150 (MQ=255)
                                                                                                                                                    cTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGGATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGGGAGGGGAAATGGCCGCACTGCTCACCAATTTTCTGc  >  1:1330935/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
ATGAAAGTGGCGATGACGCTGACTGGCGCGAAATCGATCAGCGAAATTACGCAAGATTCGCTGGTGCAGGGGCTGGGTAAAGAGTTGCCTGCGGCACTGGCTCCCATGGCGAAAGGGAATGCGGCATAGTCGTTTGCGCCCCCTCACCCTAACCCTCTCCCTCAGGGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGC  >  CP009273/3774249‑3774546

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑