| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP009273 | 1,725,742 | +C | coding (2399/4617 nt) | lhr → | putative ATP‑dependent helicase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 1,725,738 | 1 | . | C | 98.5% | 1313.3 / 11.1 | 322 | coding (2395/4617 nt) | lhr | putative ATP‑dependent helicase |
| Reads supporting (aligned to +/- strand): ref base . (2/3); new base C (141/176); total (143/179) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 339 total aligned reads displayed.
TTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑A‑CCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTC > CP009273/1725588‑1725882 | gCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑A‑cc > 2:6247334/1‑151 (MQ=255) ccGATGCCGCGATTTTTTTGTTTGAACCAGACAAGTTGCTGCAACTTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTGTTCGCGAATGCGCCGCGCGGGCATAATGAATGCCGGGGCGCACTCCGGGCCATCGC‑A‑cccc < 2:2619672/151‑1 (MQ=255) cGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑A‑ccccc < 1:1942269/151‑2 (MQ=255) cGATGCCGCGATTTTTTTGTTTGAACCAGAAAACTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGATTTCGCGAATGCGCCGCGCGGGCATTATTACTGCCGGGGCGCACTCCGGGCCATCGC‑A‑ccccc < 1:5255686/151‑2 (MQ=255) tGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGATCGGCACTTTTCGCCGCCCGTTTTCGCGAAAGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑A‑cccccgct > 2:3677042/1‑147 (MQ=255) ccGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCttt > 1:1507145/1‑151 (MQ=255) cgcgATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGACTGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTg < 2:1327352/151‑1 (MQ=255) tttttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGcaac < 1:1683629/151‑1 (MQ=255) ttttGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCaacaac < 2:5535983/151‑1 (MQ=255) ggtgtttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATGATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACg > 1:4563556/3‑151 (MQ=255) ttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTgc < 1:5116735/151‑1 (MQ=255) ttgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTgc < 2:3452698/151‑1 (MQ=255) tgAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTgcg < 2:844004/151‑1 (MQ=255) aaCCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTgcgcg < 1:1074792/151‑1 (MQ=255) ccAGAAAAGTTGCTGCAAATTGACCGCGAGGCGGTAGGCAGCTCGGCACTATTCGCCGCCCGTATTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGAACTCCGGGCCAACGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGcc > 2:4473948/1‑151 (MQ=255) cAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCca > 1:65472/1‑151 (MQ=255) aaaGTTGCTGCATATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCcagtca < 1:4410727/151‑1 (MQ=255) aaGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACACCGGCTGCGCGCcagtcag > 2:5079625/1‑151 (MQ=255) aGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCcagtcagt < 2:1616982/151‑1 (MQ=255) gTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGtt > 2:2073196/1‑151 (MQ=255) gTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGtt < 2:3804134/151‑1 (MQ=255) gTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGtt > 1:4157946/1‑151 (MQ=255) tgctgcAAATTGTCCGCGAGGCGGTAGGCAGCGCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCCACAACGGCTGCGCGCCAGTCAGTTGc < 2:1552720/151‑1 (MQ=255) aaaTTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGaaa > 1:2293500/1‑151 (MQ=255) aaaTTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGaaa > 2:544115/1‑151 (MQ=255) aaTTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACACCGGCTGCGCGCCAGTCAGTTGCTGGAAAt < 1:5398087/151‑1 (MQ=255) aaTTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAAt < 2:4148748/151‑1 (MQ=255) aaTTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAAt < 2:649888/151‑1 (MQ=255) tGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTACGCCGCCCGTTTTCGCGAAAGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTATGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGc > 1:3313215/1‑151 (MQ=255) tCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTc < 2:3274455/151‑1 (MQ=255) ccGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCa > 2:734381/1‑151 (MQ=255) gcgAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAgg < 2:3812839/151‑1 (MQ=255) gAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATAATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCCGTCAGTTGCTGGAAATCGCTCAGGGa > 2:6131091/1‑151 (MQ=255) aGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGat > 2:3094037/1‑151 (MQ=255) gCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGatat < 1:5633404/151‑1 (MQ=255) cGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATc > 1:615127/1‑151 (MQ=255) ggTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATcc < 1:6046147/151‑1 (MQ=255) tAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCgg > 2:1954112/1‑151 (MQ=255) aGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGa > 2:218292/1‑151 (MQ=255) ggCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGAt < 2:2923685/151‑1 (MQ=255) cAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGAttt < 2:4013739/151‑1 (MQ=255) aGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGAtttt < 1:5190172/151‑1 (MQ=255) cTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTcc < 1:6073681/151‑1 (MQ=255) cTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTcc < 2:6197731/151‑1 (MQ=255) cGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCgg > 1:2579877/1‑151 (MQ=255) cGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCgg > 2:2033038/1‑151 (MQ=255) cGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCgg < 2:1210721/151‑1 (MQ=255) cGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCgg > 2:5681757/1‑151 (MQ=255) gCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTc > 1:127725/1‑151 (MQ=255) aCTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCAt > 2:2710922/1‑151 (MQ=255) ttttCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATtc < 1:5897484/151‑1 (MQ=255) ttCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATtctc < 2:4439796/151‑1 (MQ=255) cgccgcCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCGCAGGGATATCCGGATTTTCCGGTCATTCTCGa > 2:4528230/1‑151 (MQ=255) gccgccCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGaa < 2:4601213/151‑1 (MQ=255) gccgccCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGaa > 1:836862/1‑151 (MQ=255) ccgccCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGaaa < 2:2933108/151‑1 (MQ=255) gccCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAAcc < 1:6083650/151‑1 (MQ=255) cGTTTTCGCGACGGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTa < 2:1370267/151‑1 (MQ=255) cGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTa < 1:2808010/151‑1 (MQ=255) cGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTa < 1:5943894/151‑1 (MQ=255) ttttCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTAcg > 2:3544155/1‑151 (MQ=255) ttttCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTAcg < 2:2510988/151‑1 (MQ=255) ttCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTAcgcg < 2:2399344/151‑1 (MQ=255) cgcgAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCAGTCCGGGCCATCGCTC‑CCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGat > 2:5148648/1‑150 (MQ=255) cgcgAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGaa < 1:2411050/151‑1 (MQ=255) cgcgAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGACAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCACCGCGaa < 2:476291/151‑1 (MQ=255) gcgAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAAt < 2:3173860/151‑1 (MQ=255) aaTGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTc > 1:3387785/1‑151 (MQ=255) cgccgcGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCa > 1:3767476/1‑151 (MQ=255) gccgcGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCaa > 1:4027733/1‑151 (MQ=255) ccgcGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAg < 2:3901653/151‑1 (MQ=255) ccgcGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCGACGCGAATGTCTGCAAg > 2:5208544/1‑151 (MQ=255) gcgcgGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGAt > 1:1865408/1‑151 (MQ=255) cgcgGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATg > 2:5726295/1‑151 (MQ=255) gcgGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGt < 2:6000390/151‑1 (MQ=255) gCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGTGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCTAGATGTTTAt > 2:1482973/1‑151 (MQ=255) gCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTAt < 1:3445756/151‑1 (MQ=255) cATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATg < 1:2656051/151‑1 (MQ=255) tattaATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATc > 1:1448315/1‑151 (MQ=255) tattaATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATc > 2:4825572/1‑151 (MQ=255) attaATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCt < 1:1015746/151‑1 (MQ=255) attaATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCt < 2:2109602/151‑1 (MQ=255) attaATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCt < 1:3171021/151‑1 (MQ=255) taATGCCGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTc < 1:2156865/151‑1 (MQ=255) cGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCAc > 1:4124131/1‑151 (MQ=255) cGGGGCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCAc > 2:533142/1‑151 (MQ=255) ggggCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACt > 2:6069409/1‑151 (MQ=255) ggCGCACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTgg < 1:1076928/151‑1 (MQ=255) gcgcACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGa < 1:3905083/151‑1 (MQ=255) cACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACg > 1:931645/1‑151 (MQ=255) cACTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACg > 2:173390/1‑151 (MQ=255) aCTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGt > 2:3428250/1‑151 (MQ=255) cTCCGGGCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGtt < 1:207167/151‑1 (MQ=255) gggCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGAt < 1:3121195/151‑1 (MQ=255) gggCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGAt < 2:2311688/151‑1 (MQ=255) gCCATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGc < 1:3501846/151‑1 (MQ=255) cATCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATATTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGt > 1:298880/1‑151 (MQ=255) aTCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGTTATCCGGATTTTCCGGTCATTCTCGAATCCCTACGCGAATGTCTGCAAGATGTTTATGAACTTCCCGCACTGGAACGTTTGACGCGTc < 2:943638/151‑1 (MQ=255) aTCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTc < 2:1053839/151‑1 (MQ=255) aTCGC‑ACCCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTc < 1:295079/151‑1 (MQ=255) | TTGCCCGATGCCGCGATTTTTTTGTTTGAACCAGAAAAGTTGCTGCAAATTGTCCGCGAGGCGGTAGGCAGCTCGGCACTTTTCGCCGCCCGTTTTCGCGAATGCGCCGCGCGGGCATTATTAATGCCGGGGCGCACTCCGGGCCATCGC‑A‑CCCCGCTTTGGCAACAACGGCTGCGCGCCAGTCAGTTGCTGGAAATCGCTCAGGGATATCCGGATTTTCCGGTCATTCTCGAAACCCTACGCGAATGTCTGCAAGATGTTTATGATCTTCCCGCACTGGAACGTTTGATGCGTC > CP009273/1725588‑1725882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |