mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 23,792 | A→C | 9.2% | D114A (GAC→GCC) | ydcR → | PLP‑dependent aminotransferase family protein |
| RA | NZ_CP022686 | 37,785 | T→G | 7.3% | K3N (AAA→AAC) | ansP ← | L‑asparagine permease |
| RA | NZ_CP022686 | 128,070 | A→C | 5.7% | pseudogene (26/106 nt) | mgtT → | protein MgtT |
| RA | NZ_CP022686 | 269,578 | A→C | 7.7% | G261G (GGT→GGG) | selO ← | protein adenylyltransferase SelO |
| RA | NZ_CP022686 | 294,971 | G→T | 10.1% | P175T (CCG→ACG) | celF ← | 6‑phospho‑beta‑glucosidase |
| RA | NZ_CP022686 | 311,462 | G→C | 10.7% | E119Q (GAA→CAA) ‡ | ydjY → | lipoprotein YdjY |
| RA | NZ_CP022686 | 311,464 | A→C | 10.8% | E119D (GAA→GAC) ‡ | ydjY → | lipoprotein YdjY |
| RA | NZ_CP022686 | 340,516 | A→C | 10.6% | F31V (TTT→GTT) | ydjK ← | MFS transporter |
| RA | NZ_CP022686 | 349,092 | A→C | 9.9% | N602T (AAC→ACC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 349,106 | A→C | 10.0% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 361,672 | T→G | 17.2% | intergenic (+82/+11) | CIW80_RS26330 → / ← rnd | isocitrate/isopropylmalate family dehydrogenase/ribonuclease D |
| RA | NZ_CP022686 | 364,748 | C→G | 9.9% | intergenic (‑183/+22) | fadD ← / ← yeaY | long‑chain‑fatty‑acid‑‑CoA ligase FadD/Slp family lipoprotein YeaY |
| RA | NZ_CP022686 | 372,563 | T→A | 6.6% | V271V (GTT→GTA) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 372,574 | A→C | 15.6% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 436,591 | A→C | 5.8% | intergenic (‑19/+38) | CIW80_RS02305 ← / ← CIW80_RS02310 | phage minor tail protein L/phage tail protein |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 482,321 | C→A | 8.2% | A181A (GCG→GCT) | flhA ← | flagellar biosynthesis protein FlhA |
| RA | NZ_CP022686 | 496,135 | A→C | 7.7% | V382V (GTT→GTG) | otsA ← | alpha,alpha‑trehalose‑phosphate synthase |
| RA | NZ_CP022686 | 498,662 | A→C | 9.0% | C183G (TGT→GGT) | araH ← | arabinose ABC transporter permease AraH |
| RA | NZ_CP022686 | 531,408 | A→C | 10.1% | K44N (AAA→AAC) | fliF → | flagellar basal‑body MS‑ring/collar protein FliF |
| RA | NZ_CP022686 | 556,942 | G→T | 15.2% | intergenic (+126/‑722) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 601,295 | T→G | 17.5% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 20.3% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 651,848 | A→C | 11.6% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 693,001 | A→C | 6.8% | N114T (AAC→ACC) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 694,402 | G→T | 9.3% | intergenic (+162/‑34) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,457 | G→T | 17.1% | E8* (GAA→TAA) | CIW80_RS03560 → | PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 764,997 | T→G | 16.6% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 777,344 | G→T | 10.7% | S223Y (TCC→TAC) | gmd ← | GDP‑mannose 4,6‑dehydratase |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,452 | G→T | 18.6% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 837,555 | T→G | 22.0% | intergenic (‑128/+95) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 837,561 | G→T | 14.6% | intergenic (‑134/+89) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 859,943 | T→G | 9.6% | L602V (TTA→GTA) | yehM → | DUF5682 family protein |
| RA | NZ_CP022686 | 881,739 | A→C | 20.9% | intergenic (+254/+133) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 881,760 | T→G | 18.9% | intergenic (+275/+112) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 939,755 | A→C | 5.6% | pseudogene (6/468 nt) | CIW80_RS26375 → | icd‑like protein |
| RA | NZ_CP022686 | 948,035 | A→T | 11.3% | intergenic (+104/‑153) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,046 | G→T | 11.2% | intergenic (+115/‑142) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,049 | A→T | 9.3% | intergenic (+118/‑139) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,080 | G→T | 10.4% | intergenic (+149/‑108) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 15.3% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,105 | A→C | 10.6% | intergenic (+174/‑83) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 957,112 | T→G | 12.5% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,000,401 | A→C | 13.7% | V955G (GTG→GGG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,000,431 | T→G | 24.6% | D945A (GAC→GCC) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,000,439 | T→G | 24.6% | P942P (CCA→CCC) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,005,085 | C→A | 17.3% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,047,883 | T→G | 7.6% | intergenic (‑113/+51) | nuoM ← / ← nuoL | NADH‑quinone oxidoreductase subunit M/NADH‑quinone oxidoreductase subunit L |
| RA | NZ_CP022686 | 1,065,974 | G→C | 7.6% | A38G (GCA→GGA) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,082,212 | A→C | 6.1% | L58V (TTA→GTA) | ubiX ← | flavin prenyltransferase UbiX |
| RA | NZ_CP022686 | 1,088,686 | A→C | 6.2% | V29G (GTT→GGT) | dedA ← | DedA family protein |
| RA | NZ_CP022686 | 1,100,944 | T→G | 7.6% | D187A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,100,954 | C→G | 11.0% | D184H (GAC→CAC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,100,959 | T→G | 12.9% | D182A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,120,323 | A→T | 6.4% | T2558T (ACT→ACA) | CIW80_RS05650 ← | phase‑variable autotransporter adhesin UpaE |
| RA | NZ_CP022686 | 1,174,272 | A→C | 17.1% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,195,304 | T→G | 6.2% | N130T (AAC→ACC) | cysP ← | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP |
| RA | NZ_CP022686 | 1,342,844 | A→C | 6.2% | V18G (GTC→GGC) | rseC ← | SoxR‑reducing system protein RseC |
| RA | NZ_CP022686 | 1,360,709 | T→G | 6.9% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,724 | G→T | 7.8% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,750 | G→T | 8.4% | intergenic (‑85/+239) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,556 | T→G | 17.5% | P99P (CCA→CCC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,504,250 | T→G | 16.8% | V229V (GTT→GTG) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,308 | A→T | 9.3% | M249L (ATG→TTG) ‡ | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,310 | G→T | 10.4% | M249I (ATG→ATT) ‡ | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,324 | C→A | 16.0% | P254H (CCT→CAT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,355 | T→A | 12.5% | A264A (GCT→GCA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,535,318 | A→T | 16.4% | M20L (ATG→TTG) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,535,366 | G→C | 20.6% | A36P (GCC→CCC) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,547,000 | G→C | 14.3% | intergenic (+22/‑12) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,110 | G→C | 17.3% | intergenic (+22/‑12) | CIW80_RS07710 → / → CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,564,569 | A→C | 10.8% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,564,979 | T→G | 6.2% | V327G (GTC→GGC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,566,203 | A→C | 10.9% | N735T (AAC→ACC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,619,248 | G→T | 6.6% | intergenic (+37/+280) | yqeG → / ← CIW80_RS07990 | amino acid permease/tRNA‑Gly |
| RA | NZ_CP022686 | 1,632,501 | T→G | 11.1% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,640,925 | A→C | 14.7% | R7S (AGA→AGC) | ygfM → | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| RA | NZ_CP022686 | 1,674,224 | T→G | 12.5% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 10.4% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,705,974 | T→G | 13.0% | intergenic (‑584/‑71) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,025 | C→A | 14.4% | intergenic (‑635/‑20) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,047 | G→T | 15.9% | M1M (ATG→ATT) † | metK → | methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,716,145 | A→C | 11.9% | T42P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,828,113 | A→C | 10.1% | P84P (CCT→CCG) | gspK ← | type II secretion system minor pseudopilin GspK |
| RA | NZ_CP022686 | 1,871,158 | A→C | 7.6% | V117G (GTC→GGC) | hybD ← | HyaD/HybD family hydrogenase maturation endopeptidase |
| RA | NZ_CP022686 | 1,888,362 | T→G | 9.3% | V241G (GTT→GGT) | yqhG → | YbjP/YqhG family protein |
| RA | NZ_CP022686 | 1,911,580 | G→T | 11.0% | S231R (AGC→AGA) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 1,925,365 | A→C | 5.2% | D162A (GAC→GCC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,954,923 | T→G | 15.3% | T92P (ACG→CCG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | NZ_CP022686 | 1,975,143 | G→C | 7.4% | intergenic (+12/‑51) | ebgC → / → ygjI | beta‑galactosidase subunit beta/amino acid permease |
| RA | NZ_CP022686 | 2,016,153 | T→G | 6.4% | noncoding (121/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,016,160 | T→G | 5.8% | noncoding (114/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,016,170 | A→C | 8.4% | noncoding (104/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,035,513 | T→A | 6.1% | Y141F (TAT→TTT) | rsmI ← | 16S rRNA (cytidine(1402)‑2'‑O)‑methyltransferase |
| RA | NZ_CP022686 | 2,047,993 | A→C | 7.2% | G621G (GGT→GGG) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 11.4% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,168 | A→C | 9.6% | G614G (GGT→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,061,799 | G→T | 7.9% | E390* (GAA→TAA) | argG → | argininosuccinate synthase |
| RA | NZ_CP022686 | 2,110,457 | T→G | 13.7% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 9.7% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,490 | C→A | 7.6% | M1M (ATG→ATT) † | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,123,241 | A→C | 5.5% | F208V (TTT→GTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,130,829 | A→C | 9.7% | V237G (GTT→GGT) | mreC ← | rod shape‑determining protein MreC |
| RA | NZ_CP022686 | 2,148,109 | T→G | 10.4% | V124G (GTG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,115 | T→G | 13.2% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,118 | C→G | 12.8% | A127G (GCG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,159,673 | C→A | 15.2% | A167E (GCA→GAA) | CIW80_RS10780 → | amino acid ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,172,177 | A→C | 7.6% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,185,075 | A→C | 7.1% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,194,054 | G→T | 7.9% | Q444K (CAA→AAA) | gspA ← | type II secretion system protein GspA |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,215,150 | A→C | 5.6% | R59R (CGT→CGG) | tusC ← | sulfurtransferase complex subunit TusC |
| RA | NZ_CP022686 | 2,226,139 | A→C | 7.0% | D9A (GAC→GCC) | crp → | cAMP‑activated global transcriptional regulator CRP |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,353,173 | T→G | 6.2% | L108V (TTG→GTG) | yhhN → | lysoplasmalogenase |
| RA | NZ_CP022686 | 2,357,291 | A→C | 10.4% | N26T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,357,324 | A→C | 18.2% | N37T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,361,493 | A→T | 9.4% | L189F (TTA→TTT) | nikA → | nickel ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,394,287 | T→G | 16.9% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,394,295 | G→T | 8.3% | I112I (ATC→ATA) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,394,302 | A→T | 10.2% | F110Y (TTC→TAC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,398,896 | A→C | 15.2% | K206N (AAA→AAC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,400,826 | T→G | 6.9% | V11G (GTC→GGC) | shuU → | heme ABC transporter permease ShuU/ChuU |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,516,426 | T→A | 10.0% | G612G (GGT→GGA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,516,872 | A→C | 8.0% | K761T (AAA→ACA) ‡ | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,516,873 | A→C | 8.0% | K761N (AAA→AAC) ‡ | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,572,721 | A→C | 10.2% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 11.2% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,638,855 | C→A | 6.5% | intergenic (‑170/+70) | yidB ← / ← gyrB | YidB family protein/DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | NZ_CP022686 | 2,747,591 | T→G | 5.8% | N395T (AAC→ACC) | hemY ← | protoheme IX biogenesis protein HemY |
| RA | NZ_CP022686 | 2,758,109 | A→C | 7.7% | N34T (AAC→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,128 | A→C | 7.0% | K40N (AAA→AAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,168 | A→C | 7.4% | N54H (AAC→CAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,769,155 | A→C | 9.6% | S61A (TCC→GCC) | rarD ← | EamA family transporter RarD |
| RA | NZ_CP022686 | 2,780,110 | T→G | 6.5% | F677C (TTT→TGT) | metE → | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
| RA | NZ_CP022686 | 2,821,653 | A→C | 5.4% | intergenic (+109/‑269) | hemG → / → CIW80_RS14130 | menaquinone‑dependent protoporphyrinogen IX dehydrogenase/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,834,886 | A→C | 8.3% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,852,911 | T→G | 6.6% | G172G (GGT→GGG) | CIW80_RS14270 → | aldolase |
| RA | NZ_CP022686 | 2,868,740 | T→G | 22.0% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 16.7% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,871,422 | T→G | 6.9% | N149T (AAC→ACC) | fdnG ← | formate dehydrogenase‑N subunit alpha |
| RA | NZ_CP022686 | 2,903,361 | T→G | 8.6% | N205T (AAC→ACC) | hslU ← | HslU‑‑HslV peptidase ATPase subunit |
| RA | NZ_CP022686 | 2,904,852 | T→G | 9.1% | T239P (ACG→CCG) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,904,915 | T→G | 6.5% | T218P (ACC→CCC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,920,428 | A→C | 7.3% | K68N (AAA→AAC) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,937,203 | T→G | 7.0% | T221P (ACG→CCG) | yijO ← | AraC family transcriptional regulator |
| RA | NZ_CP022686 | 2,961,318 | A→C | 12.0% | intergenic (+96/‑277) | murI → / → CIW80_RS14765 | glutamate racemase/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,989,627 | T→G | 9.2% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,020,188 | C→A | 12.9% | F119L (TTC→TTA) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,020,229 | T→G | 12.1% | V133G (GTC→GGC) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,039,810 | C→A | 8.5% | G42G (GGG→GGT) | malG ← | maltose ABC transporter permease MalG |
| RA | NZ_CP022686 | 3,066,354 | T→G | 8.4% | K134N (AAA→AAC) | CIW80_RS15265 ← | hypothetical protein |
| RA | NZ_CP022686 | 3,070,979 | T→G | 10.6% | V51G (GTA→GGA) | CIW80_RS15290 → | 2‑oxoglutarate dehydrogenase E1 component |
| RA | NZ_CP022686 | 3,070,986 | T→G | 10.5% | G53G (GGT→GGG) | CIW80_RS15290 → | 2‑oxoglutarate dehydrogenase E1 component |
| RA | NZ_CP022686 | 3,090,101 | A→C | 8.0% | V9G (GTT→GGT) | yjcB ← | YjcB family protein |
| RA | NZ_CP022686 | 3,107,078 | T→G | 6.6% | L265R (CTT→CGT) | nrfD → | cytochrome c nitrite reductase subunit NrfD |
| RA | NZ_CP022686 | 3,131,140 | G→T | 5.8% | F433L (TTC→TTA) | alsA ← | D‑allose ABC transporter ATP‑binding protein AlsA |
| RA | NZ_CP022686 | 3,136,940 | T→G | 10.9% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,151,862 | T→G | 6.7% | F176V (TTT→GTT) | proP → | glycine betaine/L‑proline transporter ProP |
| RA | NZ_CP022686 | 3,189,470 | A→C | 6.7% | V47G (GTT→GGT) | yjeH ← | L‑methionine/branched‑chain amino acid transporter |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,200,595 | A→C | 7.2% | V199G (GTT→GGT) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
| RA | NZ_CP022686 | 3,281,030 | C→A | 12.2% | F83L (TTC→TTA) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,281,052 | T→G | 11.3% | F91V (TTT→GTT) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,281,062 | T→G | 12.9% | V94G (GTG→GGG) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,287,046 | A→C | 5.3% | K117N (AAA→AAC) | cybC → | cytochrome b562 |
| RA | NZ_CP022686 | 3,348,345 | G→T | 8.6% | intergenic (‑161/‑39) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,371 | T→G | 5.3% | intergenic (‑187/‑13) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,390,629 | C→A | 10.5% | W138C (TGG→TGT) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 11.0% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,444,785 | T→G | 6.0% | T503P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,451,845 | A→C | 8.3% | E278D (GAA→GAC) | lgoD → | L‑galactonate oxidoreductase |
| RA | NZ_CP022686 | 3,461,215 | A→T | 15.5% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 16.9% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,247 | A→C | 11.9% | noncoding (66/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,469,923 | T→G | 6.2% | E122D (GAA→GAC) | yjjW ← | YjjW family glycine radical enzyme activase |
| RA | NZ_CP022686 | 3,493,424 | G→T | 6.6% | G177G (GGC→GGA) | arcA ← | two‑component system response regulator ArcA |
| RA | NZ_CP022686 | 3,496,452 | A→C | 13.7% | I273L (ATC→CTC) | thrA → | bifunctional aspartate kinase/homoserine dehydrogenase I |
| RA | NZ_CP022686 | 3,504,054 | T→G | 7.0% | V204G (GTT→GGT) | tal → | transaldolase |
| RA | NZ_CP022686 | 3,516,093 | T→G | 7.3% | V219G (GTG→GGG) | nhaA → | Na+/H+ antiporter NhaA |
| RA | NZ_CP022686 | 3,570,234 | T→G | 11.4% | L217V (TTG→GTG) | yabI → | DedA family protein |
| RA | NZ_CP022686 | 3,570,252 | T→G | 11.1% | L223V (TTG→GTG) | yabI → | DedA family protein |
| RA | NZ_CP022686 | 3,570,303 | T→G | 6.4% | L240V (TTG→GTG) | yabI → | DedA family protein |
| RA | NZ_CP022686 | 3,604,565 | A→T | 18.5% | intergenic (+81/‑150) | lpxC → / → secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| RA | NZ_CP022686 | 3,634,614 | A→C | 6.8% | K267N (AAA→AAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,657,091 | C→A | 10.5% | E248* (GAA→TAA) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,525 | T→A | 8.4% | N7Y (AAT→TAT) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,734,367 | T→G | 18.4% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,770,508 | T→G | 7.1% | intergenic (‑244/+219) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,509 | A→T | 7.8% | intergenic (‑245/+218) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 13.5% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,797,493 | G→T | 11.6% | G134C (GGT→TGT) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,801,675 | A→C | 5.2% | T56P (ACG→CCG) | cdiA → | contact‑dependent inhibition effector tRNA nuclease |
| RA | NZ_CP022686 | 3,885,457 | A→C | 9.0% | N1404T (AAC→ACC) | fdeC → | inverse autotransporter adhesin FdeC |
| RA | NZ_CP022686 | 3,925,289 | A→C | 14.2% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,369 | T→G | 9.8% | W285G (TGG→GGG) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,935,324 | T→G | 13.6% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,935,341 | T→G | 6.0% | V699V (GTA→GTC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 6.0% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,942,556 | T→G | 8.4% | T121P (ACG→CCG) | yaiO ← | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 3,950,011 | T→G | 7.3% | H127P (CAC→CCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,977,611 | A→C | 9.4% | E73D (GAA→GAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,977,656 | A→C | 10.9% | K88N (AAA→AAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 4,014,238 | C→G | 12.7% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,242 | A→T | 12.0% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,032,284 | A→C | 22.2% | T104P (ACC→CCC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,032,292 | A→C | 14.4% | E106D (GAA→GAC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,056,962 | C→A | 16.2% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,056,987 | G→C | 8.0% | D146H (GAC→CAC) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,133,839 | T→G | 14.0% | K117T (AAA→ACA) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,133,850 | T→G | 12.8% | K113N (AAA→AAC) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,141,326 | T→G | 5.8% | V73G (GTC→GGC) | entF → | enterobactin non‑ribosomal peptide synthetase EntF |
| RA | NZ_CP022686 | 4,286,455 | T→G | 9.9% | V38G (GTC→GGC) | cpoB → | cell division protein CpoB |
| RA | NZ_CP022686 | 4,290,635 | T→G | 5.9% | T109P (ACC→CCC) | ybgS ← | YbgS‑like family protein |
| RA | NZ_CP022686 | 4,331,905 | A→C | 7.1% | G300G (GGT→GGG) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,331,940 | A→C | 17.8% | F289V (TTT→GTT) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,368,341 | T→G | 15.3% | D47A (GAC→GCC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,368,372 | T→G | 14.7% | S37R (AGC→CGC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,368,380 | T→G | 12.6% | N34T (AAC→ACC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,368,429 | T→G | 8.5% | T18P (ACG→CCG) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,412,284 | A→C | 11.3% | W241G (TGG→GGG) | ybjT ← | SDR family oxidoreductase |
| RA | NZ_CP022686 | 4,413,663 | C→A | 6.4% | M118I (ATG→ATT) | ltaE ← | low‑specificity L‑threonine aldolase |
| RA | NZ_CP022686 | 4,440,297 | T→A | 10.2% | V785D (GTT→GAT) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,324 | C→A | 14.0% | P794Q (CCG→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,334 | A→G | 17.5% | Q797Q (CAA→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,445,534 | T→G | 9.9% | intergenic (+40/‑199) | serS → / → dmsA | serine‑‑tRNA ligase/dimethylsulfoxide reductase subunit A |
| RA | NZ_CP022686 | 4,485,614 | T→G | 10.8% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,571,454 | A→C | 7.0% | V54G (GTC→GGC) | pgaC ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | NZ_CP022686 | 4,587,091 | T→G | 10.8% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,589,367 | T→G | 5.7% | T247P (ACC→CCC) | CIW80_RS22920 ← | PatB family C‑S lyase |
| RA | NZ_CP022686 | 4,620,262 | A→C | 10.7% | intergenic (+6/+117) | CIW80_RS23110 → / ← CIW80_RS26565 | Exc2 family lipoprotein/hypothetical protein |
| RA | NZ_CP022686 | 4,632,182 | T→G | 8.8% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,642,951 | A→C | 10.1% | N732T (AAC→ACC) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,655,834 | A→C | 7.2% | R390R (CGT→CGG) | iroC ← | salmochelin/enterobactin export ABC transporter IroC |
| RA | NZ_CP022686 | 4,755,357 | T→G | 7.5% | intergenic (+32/‑367) | ycfP → / → ndh | alpha/beta hydrolase YcfP/NADH‑quinone dehydrogenase |
| RA | NZ_CP022686 | 4,764,877 | T→G | 13.3% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,880 | T→G | 8.4% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,904 | G→T | 10.7% | intergenic (‑84/‑177) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,914 | C→A | 7.1% | intergenic (‑94/‑167) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 13.4% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,787,799 | C→A | 5.4% | intergenic (‑52/‑44) | CIW80_RS24075 ← / → CIW80_RS24080 | IS3‑like element ISEc52 family transposase/super‑infection exclusion protein B |
| RA | NZ_CP022686 | 4,809,441 | T→G | 9.4% | G50G (GGT→GGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,809,462 | T→G | 6.1% | R57R (CGT→CGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,814,990 | T→G | 12.1% | F71V (TTT→GTT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,815,879 | T→G | 7.4% | F23V (TTC→GTC) | CIW80_RS24305 → | C40 family peptidase |
| RA | NZ_CP022686 | 4,821,347 | A→C | 11.8% | K207N (AAA→AAC) | CIW80_RS24320 → | prophage tail fiber N‑terminal domain‑containing protein |
| RA | NZ_CP022686 | 4,839,668 | T→G | 14.3% | V150V (GTA→GTC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,839,687 | T→G | 14.5% | N144T (AAC→ACC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,905,221 | T→G | 14.5% | L116R (CTT→CGT) | CIW80_RS24815 → | coenzyme F390 synthetase |
| RA | NZ_CP022686 | 4,916,128 | A→C | 6.4% | intergenic (+255/+30) | tdk → / ← CIW80_RS24885 | thymidine kinase/IS4 family transposase |
| RA | NZ_CP022686 | 4,917,402 | C→A | 5.9% | E869* (GAA→TAA) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,918,873 | T→G | 10.1% | Q378H (CAA→CAC) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,947,316 | G→T | 8.0% | A36S (GCT→TCT) | rluB → | 23S rRNA pseudouridine(2605) synthase RluB |
| RA | NZ_CP022686 | 4,947,335 | T→G | 8.8% | V42G (GTT→GGT) | rluB → | 23S rRNA pseudouridine(2605) synthase RluB |
| RA | NZ_CP022686 | 4,951,545 | A→C | 12.3% | S47R (AGT→CGT) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 4,980,895 | A→C | 7.6% | C101W (TGT→TGG) | sapD ← | peptide ABC transporter ATP‑binding protein SapD |
| RA | NZ_CP022686 | 4,990,017 | T→G | 6.9% | V358G (GTC→GGC) | ycjM → | glucosylglycerate phosphorylase |
| RA | NZ_CP022686 | 5,000,034 | T→G | 10.3% | L162R (CTC→CGC) | CIW80_RS25310 → | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 5,042,385 | T→A | 9.3% | G672G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,855 | T→A | 11.9% | G1162G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,182 | T→A | 8.6% | G1271G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,614 | T→C | 9.9% | G1415G (GGT→GGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| JC | pHH‑29_RBS | 1,408 | Δ79 bp | 84.0% | [ompA] | [ompA] | |
| JC | pHH‑29_RBS | 1,522 | Δ41 bp | 10.3% | coding (24‑64/570 nt) | Aldafermin (NGM282) → | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 776–2618 | 2982–2957 | 340–2207 | 3330 [3031] | [3104] 3513 | JNG15_RS00010–[mobA] | JNG15_RS00010,JNG15_RS00015,[mobA] |
| * | * | ÷ | pHH‑29_RBS | 2769–2909 | 5512–3104 | 196–2744 | 10604 [9941] | [8385] 10317 | putative HTH domain protein (MarR‑like)–hypothetical protein | putative HTH domain protein (MarR‑like),putative HTH domain protein,uncharacterized protein,hypothetical protein |