mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 133,849 | T→G | 5.0% | T465P (ACG→CCG) | ydfI ← | mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 162,405 | T→G | 7.5% | F46V (TTT→GTT) | ydgH → | DUF1471 family protein YdgH |
| RA | NZ_CP022686 | 196,840 | A→C | 5.9% | N132T (AAC→ACC) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | NZ_CP022686 | 298,027 | A→C | 10.0% | F60C (TTT→TGT) | chbC ← | PTS N,N'‑diacetylchitobiose transporter subunit IIC |
| RA | NZ_CP022686 | 349,106 | A→C | 12.3% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 355,148 | T→G | 5.1% | G139G (GGT→GGG) D270A (GAC→GCC) |
yeaL → nimR ← |
DUF441 domain‑containing protein DNA‑binding transcriptional regulator NimR |
| RA | NZ_CP022686 | 360,227 | T→G | 20.9% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 372,574 | A→C | 11.9% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 402,874 | A→C | 8.2% | pseudogene (785/2061 nt) | ptrB ← | oligopeptidase B |
| RA | NZ_CP022686 | 443,269 | C→A | 5.3% | Q671H (CAG→CAT) | CIW80_RS02355 ← | Clp protease ClpP |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 597,830 | A→C | 11.4% | D452A (GAC→GCC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,295 | T→G | 14.4% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 23.1% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 636,757 | C→A | 11.7% | G438W (GGG→TGG) | clbM ← | precolibactin export MATE transporter ClbM |
| RA | NZ_CP022686 | 651,817 | G→T | 12.6% | P249T (CCA→ACA) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 651,848 | A→C | 12.9% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 693,001 | A→C | 5.8% | N114T (AAC→ACC) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 694,402 | G→T | 10.1% | intergenic (+162/‑34) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,421 | G→T | 10.0% | intergenic (+181/‑15) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,435 | C→A | 5.8% | intergenic (+195/‑1) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 759,026 | T→G | 16.5% | K223N (AAA→AAC) | CIW80_RS03960 ← | glycosyltransferase family 2 protein |
| RA | NZ_CP022686 | 759,039 | A→T | 17.4% | L219* (TTA→TAA) | CIW80_RS03960 ← | glycosyltransferase family 2 protein |
| RA | NZ_CP022686 | 764,997 | T→G | 12.1% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 777,349 | C→A | 9.2% | M221I (ATG→ATT) | gmd ← | GDP‑mannose 4,6‑dehydratase |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,441 | C→A | 26.0% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,452 | G→T | 22.7% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 17.1% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 837,555 | T→G | 15.0% | intergenic (‑128/+95) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 837,561 | G→T | 8.8% | intergenic (‑134/+89) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 837,589 | A→T | 9.7% | intergenic (‑162/+61) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 859,943 | T→G | 13.4% | L602V (TTA→GTA) | yehM → | DUF5682 family protein |
| RA | NZ_CP022686 | 881,733 | A→C | 15.4% | intergenic (+248/+139) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 881,760 | T→G | 15.5% | intergenic (+275/+112) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,027 | A→T | 9.7% | intergenic (+96/‑161) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 13.9% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 957,112 | T→G | 25.5% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 957,147 | T→G | 6.4% | N77T (AAC→ACC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 998,355 | A→C | 6.2% | V48G (GTA→GGA) | gyrA ← | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| RA | NZ_CP022686 | 1,005,079 | G→T | 6.3% | L378L (CTG→CTT) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,005,085 | C→A | 13.6% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,065,978 | A→C | 6.6% | F37V (TTT→GTT) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,100,907 | T→G | 15.1% | E199D (GAA→GAC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,100,959 | T→G | 13.1% | D182A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,172,467 | C→A | 15.2% | A130E (GCA→GAA) | yfeD → | putative DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 1,174,279 | A→T | 8.6% | intergenic (+8/‑36) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,203,715 | T→G | 6.9% | G238G (GGT→GGG) | hemF → | oxygen‑dependent coproporphyrinogen oxidase |
| RA | NZ_CP022686 | 1,213,479 | T→G | 13.2% | G420G (GGA→GGC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,213,483 | T→G | 14.7% | N419T (AAC→ACC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,237,918 | C→A | 9.4% | C303F (TGC→TTC) | tmcA ← | tRNA cytosine(34) acetyltransferase TmcA |
| RA | NZ_CP022686 | 1,280,117 | T→G | 6.6% | N8H (AAC→CAC) | yfgM ← | ancillary SecYEG translocon subunit YfgM |
| RA | NZ_CP022686 | 1,360,709 | T→G | 11.2% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,736 | G→T | 9.8% | intergenic (‑71/+253) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,739 | A→T | 8.4% | intergenic (‑74/+250) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,750 | G→T | 10.7% | intergenic (‑85/+239) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,556 | T→G | 16.0% | P99P (CCA→CCC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,370,619 | T→G | 8.3% | E78D (GAA→GAC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,371,071 | G→T | 12.6% | D29Y (GAT→TAT) | bamD → | outer membrane protein assembly factor BamD |
| RA | NZ_CP022686 | 1,371,081 | C→A | 18.9% | P32Q (CCA→CAA) | bamD → | outer membrane protein assembly factor BamD |
| RA | NZ_CP022686 | 1,424,327 | T→A | 8.6% | intergenic (‑23/+40) | CIW80_RS07085 ← / ← CIW80_RS07090 | tRNA‑Arg/tRNA‑Arg |
| RA | NZ_CP022686 | 1,424,362 | A→T | 7.5% | intergenic (‑58/+5) | CIW80_RS07085 ← / ← CIW80_RS07090 | tRNA‑Arg/tRNA‑Arg |
| RA | NZ_CP022686 | 1,479,595 | G→C | 9.3% | intergenic (‑4/+189) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,479,607 | A→C | 12.4% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,504,310 | G→T | 14.9% | M249I (ATG→ATT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,373 | G→C | 9.9% | K270N (AAG→AAC) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,547,110 | G→C | 20.7% | intergenic (+22/‑12) | CIW80_RS07710 → / → CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,113 | G→C | 21.0% | intergenic (+25/‑9) | CIW80_RS07710 → / → CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,564,569 | A→C | 11.2% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,564,589 | A→C | 7.6% | N197T (AAC→ACC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,640,888 | G→T | 10.1% | intergenic (+34/‑17) | ssnA → / → ygfM | putative aminohydrolase SsnA/molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| RA | NZ_CP022686 | 1,640,925 | A→C | 14.3% | R7S (AGA→AGC) | ygfM → | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| RA | NZ_CP022686 | 1,674,224 | T→G | 13.5% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 16.2% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 13.2% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,705,974 | T→G | 11.9% | intergenic (‑584/‑71) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,011 | G→T | 8.8% | intergenic (‑621/‑34) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,032 | G→T | 8.8% | intergenic (‑642/‑13) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,047 | G→T | 13.5% | M1M (ATG→ATT) † | metK → | methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,716,180 | A→C | 11.9% | K53N (AAA→AAC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,202 | A→C | 11.1% | T61P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,758,771 | T→G | 7.8% | intergenic (+18/‑254) | sat → / → CIW80_RS08700 | serine protease autotransporter toxin Sat/transposase |
| RA | NZ_CP022686 | 1,860,060 | T→G | 18.1% | K122T (AAA→ACA) | CIW80_RS09255 ← | YtfJ family protein |
| RA | NZ_CP022686 | 1,860,070 | C→A | 18.7% | E119* (GAA→TAA) | CIW80_RS09255 ← | YtfJ family protein |
| RA | NZ_CP022686 | 1,865,103 | A→C | 7.6% | L491V (TTG→GTG) | pitB ← | inorganic phosphate transporter PitB |
| RA | NZ_CP022686 | 1,911,602 | T→G | 10.7% | N224T (AAC→ACC) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 2,016,160 | T→G | 9.8% | noncoding (114/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,016,170 | A→C | 8.6% | noncoding (104/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,049,089 | T→G | 21.2% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 9.9% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,061,799 | G→T | 11.5% | E390* (GAA→TAA) | argG → | argininosuccinate synthase |
| RA | NZ_CP022686 | 2,061,804 | A→C | 9.3% | K391N (AAA→AAC) | argG → | argininosuccinate synthase |
| RA | NZ_CP022686 | 2,076,552 | A→C | 9.8% | intergenic (+22/‑211) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,076,554 | T→G | 12.7% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,076,556 | C→G | 6.8% | intergenic (+26/‑207) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,110,457 | T→G | 13.3% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,123,234 | T→A | 6.5% | Y210F (TAT→TTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,123,241 | A→C | 11.4% | F208V (TTT→GTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,148,115 | T→G | 11.2% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,143 | C→G | 10.2% | F135L (TTC→TTG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,179,878 | T→G | 13.5% | K35T (AAG→ACG) | rplQ ← | 50S ribosomal protein L17 |
| RA | NZ_CP022686 | 2,185,071 | A→C | 8.7% | G47G (GGT→GGG) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,185,075 | A→C | 8.5% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,188,239 | G→T | 6.9% | intergenic (‑108/+57) | rplN ← / ← rpsQ | 50S ribosomal protein L14/30S ribosomal protein S17 |
| RA | NZ_CP022686 | 2,207,100 | C→A | 8.7% | intergenic (‑124/+45) | bfd ← / ← chiA | bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,209,101 | A→T | 5.3% | I249I (ATT→ATA) | chiA ← | bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,226,139 | A→C | 7.3% | D9A (GAC→GCC) | crp → | cAMP‑activated global transcriptional regulator CRP |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,357,291 | A→C | 14.1% | N26T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,362,954 | T→G | 6.5% | F152V (TTT→GTT) | nikB → | nickel ABC transporter permease subunit NikB |
| RA | NZ_CP022686 | 2,362,972 | T→G | 9.3% | F158V (TTT→GTT) | nikB → | nickel ABC transporter permease subunit NikB |
| RA | NZ_CP022686 | 2,393,013 | T→G | 6.9% | intergenic (+151/‑2) | slp → / → dctR | outer membrane lipoprotein Slp/LuxR C‑terminal‑related transcriptional regulator |
| RA | NZ_CP022686 | 2,394,287 | T→G | 14.1% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,394,295 | G→T | 8.0% | I112I (ATC→ATA) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,460,576 | C→A | 14.8% | M1M (ATG→ATT) † | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,470,422 | T→G | 12.7% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,558,864 | T→G | 7.4% | F128V (TTT→GTT) | yicG → | trimeric intracellular cation channel family protein |
| RA | NZ_CP022686 | 2,572,721 | A→C | 8.2% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 9.6% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,638,855 | C→A | 12.4% | intergenic (‑170/+70) | yidB ← / ← gyrB | YidB family protein/DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | NZ_CP022686 | 2,718,627 | T→G | 8.8% | F510V (TTC→GTC) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,736,585 | T→A | 11.5% | Y183N (TAC→AAC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,736,586 | A→C | 15.3% | Y183S (TAC→TCC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,743,563 | T→G | 11.6% | noncoding (65/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,758,128 | A→C | 6.9% | K40N (AAA→AAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,168 | A→C | 8.1% | N54H (AAC→CAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,868,740 | T→G | 19.0% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 14.5% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,871,422 | T→G | 9.4% | N149T (AAC→ACC) | fdnG ← | formate dehydrogenase‑N subunit alpha |
| RA | NZ_CP022686 | 2,904,852 | T→G | 10.7% | T239P (ACG→CCG) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,904,856 | T→G | 6.5% | K237N (AAA→AAC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,904,915 | T→G | 7.6% | T218P (ACC→CCC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,920,418 | C→A | 6.2% | A65E (GCA→GAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,961,318 | A→C | 8.2% | intergenic (+96/‑277) | murI → / → CIW80_RS14765 | glutamate racemase/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,989,627 | T→G | 8.6% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,042,379 | T→G | 5.9% | T154P (ACC→CCC) | malE ← | maltose/maltodextrin ABC transporter substrate‑binding protein MalE |
| RA | NZ_CP022686 | 3,086,834 | A→C | 10.0% | F708V (TTT→GTT) | uvrA ← | excinuclease ABC subunit UvrA |
| RA | NZ_CP022686 | 3,124,925 | A→C | 5.5% | F215V (TTT→GTT) | mdtN ← | multidrug efflux transporter periplasmic adaptor subunit MdtN |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,281,004 | T→G | 10.3% | F75V (TTT→GTT) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,281,062 | T→G | 7.2% | V94G (GTG→GGG) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,348,374 | C→G | 6.9% | intergenic (‑190/‑10) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,387,616 | G→T | 7.7% | I231I (ATC→ATA) | sgcQ ← | BtpA family protein SgcQ |
| RA | NZ_CP022686 | 3,387,650 | A→C | 6.4% | V220G (GTC→GGC) | sgcQ ← | BtpA family protein SgcQ |
| RA | NZ_CP022686 | 3,390,614 | G→T | 10.3% | A143A (GCC→GCA) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,390,671 | T→G | 9.1% | K124N (AAA→AAC) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,459,376 | C→A | 10.9% | S64Y (TCT→TAT) | bglJ → | DNA‑binding transcriptional activator BglJ |
| RA | NZ_CP022686 | 3,461,127 | A→C | 7.4% | noncoding (65/87 nt) | CIW80_RS17335 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,200 | C→A | 11.7% | intergenic (‑9/+26) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,215 | A→T | 12.0% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,218 | G→C | 10.0% | intergenic (‑27/+8) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 19.5% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,231 | C→G | 6.6% | noncoding (82/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,247 | A→C | 10.9% | noncoding (66/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,493,172 | G→T | 10.5% | W449C (TGG→TGT) | creD → | cell envelope integrity protein CreD |
| RA | NZ_CP022686 | 3,496,452 | A→C | 12.2% | I273L (ATC→CTC) | thrA → | bifunctional aspartate kinase/homoserine dehydrogenase I |
| RA | NZ_CP022686 | 3,516,075 | T→G | 8.5% | V213G (GTG→GGG) | nhaA → | Na+/H+ antiporter NhaA |
| RA | NZ_CP022686 | 3,547,903 | T→G | 7.6% | F15V (TTT→GTT) | CIW80_RS17770 → | CcdB family protein |
| RA | NZ_CP022686 | 3,604,564 | G→T | 10.0% | intergenic (+80/‑151) | lpxC → / → secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| RA | NZ_CP022686 | 3,606,005 | G→T | 7.1% | V239V (GTG→GTT) | secA → | preprotein translocase subunit SecA |
| RA | NZ_CP022686 | 3,634,614 | A→C | 11.6% | K267N (AAA→AAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | NZ_CP022686 | 3,655,540 | A→C | 8.8% | F765V (TTT→GTT) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,667,058 | A→C | 7.6% | D5A (GAC→GCC) | mrcB → | bifunctional glycosyl transferase/transpeptidase |
| RA | NZ_CP022686 | 3,731,473 | Δ1 bp | 100% | intergenic (+27/‑28) | rrf → / → CIW80_RS18620 | 5S ribosomal RNA/tRNA‑Asp |
| RA | NZ_CP022686 | 3,734,367 | T→G | 26.5% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,380 | T→G | 21.5% | L229R (CTC→CGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,770,521 | C→G | 5.5% | intergenic (‑257/+206) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,796,795 | A→C | 7.0% | V10G (GTC→GGC) | CIW80_RS19060 ← | PTS sugar transporter subunit IIA |
| RA | NZ_CP022686 | 3,806,265 | T→A | 9.7% | Y1586N (TAC→AAC) | cdiA → | contact‑dependent inhibition effector tRNA nuclease |
| RA | NZ_CP022686 | 3,824,318 | C→G | 8.8% | L213V (CTT→GTT) | CIW80_RS19155 → | TolC family protein |
| RA | NZ_CP022686 | 3,850,144 | C→A | 5.6% | intergenic (+42/‑50) | gpt → / → frsA | xanthine phosphoribosyltransferase/esterase FrsA |
| RA | NZ_CP022686 | 3,868,846 | T→G | 10.7% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,925,289 | A→C | 10.1% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,345 | T→G | 10.7% | F277V (TTC→GTC) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,355 | C→G | 13.8% | A280G (GCT→GGT) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,376 | T→G | 9.8% | V287G (GTA→GGA) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,935,324 | T→G | 14.6% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,724 | A→C | 8.2% | V308G (GTA→GGA) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,977,656 | A→C | 9.9% | K88N (AAA→AAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,981,933 | T→G | 12.7% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,014,225 | C→G | 7.9% | intergenic (+71/‑273) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,238 | C→G | 11.6% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,242 | A→T | 10.9% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,247 | G→T | 8.8% | intergenic (+93/‑251) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,250 | C→G | 9.4% | intergenic (+96/‑248) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,056,946 | T→G | 10.0% | V132G (GTT→GGT) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,056,951 | C→A | 15.2% | H134N (CAC→AAC) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,056,962 | C→A | 19.2% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,067,840 | A→C | 6.0% | K7N (AAA→AAC) | ybaQ → | HigA family addiction module antitoxin |
| RA | NZ_CP022686 | 4,073,132 | C→A | 14.7% | S404R (AGC→AGA) | ybaT → | amino acid permease |
| RA | NZ_CP022686 | 4,133,850 | T→G | 11.7% | K113N (AAA→AAC) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,196,276 | T→G | 12.1% | E15D (GAA→GAC) | holA ← | DNA polymerase III subunit delta |
| RA | NZ_CP022686 | 4,213,266 | A→T | 6.8% | L190F (TTA→TTT) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | NZ_CP022686 | 4,214,126 | T→G | 9.2% | intergenic (‑26/+12) | CIW80_RS21080 ← / ← CIW80_RS21085 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,280,095 | T→G | 8.7% | G103G (GGT→GGG) | cydB → | cytochrome d ubiquinol oxidase subunit II |
| RA | NZ_CP022686 | 4,286,455 | T→G | 7.5% | V38G (GTC→GGC) | cpoB → | cell division protein CpoB |
| RA | NZ_CP022686 | 4,290,599 | T→G | 6.7% | T121P (ACC→CCC) | ybgS ← | YbgS‑like family protein |
| RA | NZ_CP022686 | 4,335,504 | T→G | 5.6% | K58N (AAA→AAC) | ybhF ← | ATP‑binding cassette domain‑containing protein |
| RA | NZ_CP022686 | 4,368,341 | T→G | 17.5% | D47A (GAC→GCC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,368,380 | T→G | 9.4% | N34T (AAC→ACC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,440,324 | C→A | 15.5% | P794Q (CCG→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,334 | A→C | 19.2% | Q797H (CAA→CAC) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,461,732 | T→G | 7.8% | intergenic (+86/‑84) | aroA → / → ycaL | 3‑phosphoshikimate 1‑carboxyvinyltransferase/metallopeptidase YcaL |
| RA | NZ_CP022686 | 4,485,614 | T→G | 8.8% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,535,330 | A→C | 7.8% | D112A (GAC→GCC) | appA → | bifunctional acid phosphatase/4‑phytase |
| RA | NZ_CP022686 | 4,547,558 | A→C | 6.2% | T144P (ACC→CCC) | torD → | molecular chaperone TorD |
| RA | NZ_CP022686 | 4,562,561 | C→A | 10.2% | R136L (CGT→CTT) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | NZ_CP022686 | 4,605,579 | T→G | 16.8% | T56P (ACG→CCG) | CIW80_RS23010 ← | hypothetical protein |
| RA | NZ_CP022686 | 4,632,182 | T→G | 12.5% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,642,951 | A→C | 9.7% | N732T (AAC→ACC) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,661,459 | T→G | 6.3% | pseudogene (559/655 nt) | CIW80_RS26570 → | hypothetical protein |
| RA | NZ_CP022686 | 4,712,763 | A→C | 12.8% | A52A (GCT→GCG) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,764,877 | T→G | 11.7% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,880 | T→G | 7.2% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,904 | G→T | 7.4% | intergenic (‑84/‑177) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 12.9% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,791,863 | C→A | 8.6% | T80T (ACC→ACA) | CIW80_RS24115 → | CII family transcriptional regulator |
| RA | NZ_CP022686 | 4,809,441 | T→G | 8.4% | G50G (GGT→GGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,839,687 | T→G | 12.9% | N144T (AAC→ACC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,855,513 | G→C | 5.9% | S139C (TCT→TGT) | cvrA ← | potassium/proton antiporter |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,905,163 | C→A | 8.2% | P97T (CCC→ACC) | CIW80_RS24815 → | coenzyme F390 synthetase |
| RA | NZ_CP022686 | 4,951,521 | A→C | 7.6% | T39P (ACC→CCC) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 4,980,895 | A→C | 11.0% | C101W (TGT→TGG) | sapD ← | peptide ABC transporter ATP‑binding protein SapD |
| RA | NZ_CP022686 | 5,000,015 | T→G | 7.2% | F156V (TTT→GTT) | CIW80_RS25310 → | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 5,001,164 | A→C | 13.7% | N163T (AAC→ACC) | ompG → | monomeric porin OmpG |
| RA | NZ_CP022686 | 5,041,191 | G→A | 5.7% | A274A (GCG→GCA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,042,289 | T→C | 9.4% | N640N (AAT→AAC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,042,304 | T→G | 13.4% | N645K (AAT→AAG) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,014 | T→A | 8.0% | V1215V (GTT→GTA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,182 | T→A | 6.5% | G1271G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 2,031 | G→A | 100% | intergenic (‑235/‑1500) | putative rom (RNA I inhibition modulator protein) ← / → ompA | –/– |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,595 | Δ15 bp | 100% | [IL2wt no signal] | [IL2wt no signal] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 590–2618 | 3084–2957 | 340–2495 | 8625 [8552] | [8504] 9188 | [JNG15_RS00005]–mobA | [JNG15_RS00005],JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMut‑Ompa‑D5‑IL2wt‑His6 | 4740–4809 | 5478–5214 | 406–739 | 4556 [4335] | [0] NA | [putative HTH domain protein] | [putative HTH domain protein] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 3743172 = | 270 (1.230) | 22 (0.100) | 13/248 | NT | 7.9% | intergenic (+1/+253) | CIW80_RS18695/CIW80_RS18700 | IS66 family transposase/IS110‑like element ISEc45 family transposase |
| ? | NZ_CP022686 | = 3744618 | 244 (1.120) | intergenic (‑60/‑4) | CIW80_RS18700/CIW80_RS18705 | IS110‑like element ISEc45 family transposase/transposase | |||||
| * | ? | NZ_CP022686 | 3899666 = | 230 (1.050) | 41 (0.210) | 28/218 | NT | 17.7% | intergenic (‑40/+290) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | 3899944 = | 182 (0.950) | intergenic (‑318/+12) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||
| * | ? | NZ_CP022686 | = 3899681 | 223 (1.020) | 52 (0.270) | 35/218 | NT | 21.7% | intergenic (‑55/+275) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | = 3899927 | 182 (0.950) | intergenic (‑301/+29) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||
| * | ? | NZ_CP022686 | 4514374 = | 223 (1.020) | 7 (0.000) +AGCT |
5/242 | NT | 5.9% | coding (59/1053 nt) | ompA | porin OmpA |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3609 = | 6 (0.000) | coding (1/399 nt) | IL2wt no signal | ||||||