mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 197,854 | T→G | 9.1% | V470G (GTT→GGT) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | NZ_CP022686 | 201,794 | T→G | 8.7% | K93N (AAA→AAC) | mliC ← | C‑type lysozyme inhibitor |
| RA | NZ_CP022686 | 329,133 | C→T | 13.9% | intergenic (‑81/‑80) | ydjA ← / → sppA | NAD(P)H nitroreductase/signal peptide peptidase SppA |
| RA | NZ_CP022686 | 349,123 | A→C | 7.8% | K612N (AAA→AAC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 364,743 | T→G | 9.3% | intergenic (‑178/+27) | fadD ← / ← yeaY | long‑chain‑fatty‑acid‑‑CoA ligase FadD/Slp family lipoprotein YeaY |
| RA | NZ_CP022686 | 402,874 | A→C | 7.5% | pseudogene (785/2061 nt) | ptrB ← | oligopeptidase B |
| RA | NZ_CP022686 | 418,374 | T→G | 10.8% | F48V (TTT→GTT) | znuB → | zinc ABC transporter permease subunit ZnuB |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 556,940 | A→T | 16.2% | intergenic (+124/‑724) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 596,637 | T→G | 10.5% | G54G (GGT→GGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 597,830 | A→C | 15.4% | D452A (GAC→GCC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,295 | T→G | 17.7% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 12.7% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,337 | T→G | 9.7% | V1621G (GTT→GGT) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 692,994 | G→T | 9.6% | D112Y (GAT→TAT) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 765,001 | A→T | 8.5% | Y40N (TAC→AAC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 766,757 | T→G | 16.7% | K290N (AAA→AAC) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,441 | C→A | 23.1% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,452 | G→T | 22.3% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 17.9% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 845,497 | A→C | 5.6% | V267G (GTC→GGC) | apbC ← | iron‑sulfur cluster carrier protein ApbC |
| RA | NZ_CP022686 | 881,739 | A→C | 18.3% | intergenic (+254/+133) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 937,864 | G→A | 100% | G29R (GGA→AGA) | CIW80_RS04770 → | integrase domain‑containing protein |
| RA | NZ_CP022686 | 948,029 | C→A | 14.7% | intergenic (+98/‑159) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 16.4% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 957,112 | T→G | 15.5% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,005,073 | A→C | 8.5% | E376D (GAA→GAC) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,005,082 | T→A | 12.9% | Y379* (TAT→TAA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,005,085 | C→A | 18.0% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,040,909 | A→C | 10.2% | E232D (GAA→GAC) | rbn → | ribonuclease BN |
| RA | NZ_CP022686 | 1,172,467 | C→A | 16.8% | A130E (GCA→GAA) | yfeD → | putative DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 1,174,272 | A→C | 13.6% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,213,479 | T→G | 15.6% | G420G (GGA→GGC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,237,918 | C→A | 11.1% | C303F (TGC→TTC) | tmcA ← | tRNA cytosine(34) acetyltransferase TmcA |
| RA | NZ_CP022686 | 1,239,833 | G→T | 13.9% | intergenic (‑130/+38) | ypfJ ← / ← purC | neutral zinc metallopeptidase/phosphoribosylaminoimidazolesuccinocarboxamide synthase |
| RA | NZ_CP022686 | 1,272,651 | T→G | 8.2% | N91T (AAC→ACC) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,360,709 | T→G | 8.4% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,724 | G→T | 11.9% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,750 | G→T | 15.7% | intergenic (‑85/+239) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,372,377 | T→G | 14.9% | intergenic (+42/‑62) | raiA → / → pheL | ribosome‑associated translation inhibitor RaiA/pheA operon leader peptide PheL |
| RA | NZ_CP022686 | 1,383,405 | T→G | 6.8% | F240V (TTT→GTT) | ypjD → | inner membrane protein YpjD |
| RA | NZ_CP022686 | 1,424,352 | A→T | 8.4% | intergenic (‑48/+15) | CIW80_RS07085 ← / ← CIW80_RS07090 | tRNA‑Arg/tRNA‑Arg |
| RA | NZ_CP022686 | 1,441,800 | T→G | 9.1% | N587T (AAC→ACC) | hypF ← | carbamoyltransferase HypF |
| RA | NZ_CP022686 | 1,447,199 | A→C | 10.8% | V35G (GTA→GGA) | hycI ← | hydrogenase maturation peptidase HycI |
| RA | NZ_CP022686 | 1,479,619 | T→A | 9.2% | intergenic (‑28/+165) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,481,375 | A→C | 8.2% | V272G (GTG→GGG) | cysN ← | sulfate adenylyltransferase subunit CysN |
| RA | NZ_CP022686 | 1,504,361 | G→T | 20.3% | V266V (GTG→GTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,373 | G→C | 19.8% | K270N (AAG→AAC) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,524,167 | T→G | 5.9% | intergenic (+45/+195) | CIW80_RS07590 → / ← syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein |
| RA | NZ_CP022686 | 1,558,395 | A→C | 12.3% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,543 | A→C | 8.6% | S182R (AGC→CGC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 12.0% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,632,501 | T→G | 10.5% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,633,846 | T→G | 30.0% | N253T (AAC→ACC) | yqeB ← | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | NZ_CP022686 | 1,640,888 | G→T | 9.9% | intergenic (+34/‑17) | ssnA → / → ygfM | putative aminohydrolase SsnA/molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| RA | NZ_CP022686 | 1,674,224 | T→G | 12.2% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 11.9% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,716,167 | A→C | 10.2% | N49T (AAC→ACC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,767,277 | T→G | 6.4% | intergenic (‑155/+136) | CIW80_RS08760 ← / ← CIW80_RS08770 | hypothetical protein/hypothetical protein |
| RA | NZ_CP022686 | 1,828,110 | A→C | 6.4% | R85R (CGT→CGG) | gspK ← | type II secretion system minor pseudopilin GspK |
| RA | NZ_CP022686 | 1,833,749 | G→T | 16.4% | V466V (GTC→GTA) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,833,762 | A→C | 16.4% | L462R (CTG→CGG) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,925,332 | A→C | 9.3% | N151T (AAC→ACC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,954,923 | T→G | 17.3% | T92P (ACG→CCG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | NZ_CP022686 | 2,016,225 | T→G | 9.2% | noncoding (49/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,049,089 | T→G | 13.5% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 14.5% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,076,554 | T→G | 11.7% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,101,798 | G→T | 9.4% | E250* (GAA→TAA) | gltD → | glutamate synthase subunit GltD |
| RA | NZ_CP022686 | 2,148,115 | T→G | 13.6% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,136 | T→G | 9.4% | V133G (GTT→GGT) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,141 | T→G | 15.0% | F135V (TTC→GTC) ‡ | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,143 | C→G | 13.9% | F135L (TTC→TTG) ‡ | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,159,652 | A→C | 10.5% | N160T (AAC→ACC) | CIW80_RS10780 → | amino acid ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,172,177 | A→C | 7.0% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,207,122 | A→C | 9.0% | intergenic (‑146/+23) | bfd ← / ← chiA | bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,209,103 | T→A | 5.6% | I249F (ATT→TTT) | chiA ← | bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,272,831 | G→T | 7.5% | intergenic (+73/‑24) | greB → / → yhgF | transcription elongation factor GreB/Tex family protein |
| RA | NZ_CP022686 | 2,275,771 | A→C | 6.3% | D47A (GAC→GCC) | feoA → | ferrous iron transporter A |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,357,291 | A→C | 9.0% | N26T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,380,936 | A→C | 7.7% | K186N (AAA→AAC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,394,287 | T→G | 14.2% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,394,291 | C→G | 14.9% | E114Q (GAA→CAA) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,398,885 | A→C | 14.3% | S203R (AGC→CGC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,398,896 | A→C | 13.6% | K206N (AAA→AAC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,460,576 | C→A | 11.0% | M1M (ATG→ATT) † | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,581 | A→C | 23.5% | intergenic (‑3/‑155) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,470,422 | T→G | 9.9% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,516,577 | A→G | 8.4% | T663A (ACA→GCA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,546,394 | A→C | 13.5% | V95G (GTT→GGT) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,572,705 | A→C | 11.7% | G191G (GGT→GGG) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,572,721 | A→C | 12.1% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,638,855 | C→A | 9.5% | intergenic (‑170/+70) | yidB ← / ← gyrB | YidB family protein/DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | NZ_CP022686 | 2,736,578 | C→A | 9.9% | T180T (ACC→ACA) | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,743,563 | T→G | 9.9% | noncoding (65/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,743,582 | A→C | 13.6% | noncoding (84/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,758,109 | A→C | 8.2% | N34T (AAC→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,128 | A→C | 6.9% | K40N (AAA→AAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,144 | A→C | 9.7% | T46P (ACG→CCG) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,769,154 | G→C | 9.3% | S61C (TCC→TGC) | rarD ← | EamA family transporter RarD |
| RA | NZ_CP022686 | 2,769,179 | G→C | 14.8% | L53V (CTG→GTG) | rarD ← | EamA family transporter RarD |
| RA | NZ_CP022686 | 2,868,740 | T→G | 25.8% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,904,856 | T→G | 9.1% | K237N (AAA→AAC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,904,915 | T→G | 6.3% | T218P (ACC→CCC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,920,418 | C→A | 7.2% | A65E (GCA→GAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,937,239 | T→G | 6.2% | T209P (ACG→CCG) | yijO ← | AraC family transcriptional regulator |
| RA | NZ_CP022686 | 2,961,318 | A→C | 9.4% | intergenic (+96/‑277) | murI → / → CIW80_RS14765 | glutamate racemase/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,981,612 | A→C | 10.3% | T567P (ACC→CCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,994,693 | T→G | 10.4% | W162G (TGG→GGG) | yjaH → | DUF1481 domain‑containing protein |
| RA | NZ_CP022686 | 3,017,622 | A→C | 16.6% | K839N (AAA→AAC) | metH → | methionine synthase |
| RA | NZ_CP022686 | 3,020,229 | T→G | 13.8% | V133G (GTC→GGC) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,058,442 | A→T | 5.7% | Y316N (TAC→AAC) | CIW80_RS15235 ← | FAD‑binding protein |
| RA | NZ_CP022686 | 3,080,433 | T→G | 6.3% | V149G (GTC→GGC) | CIW80_RS15320 → | Ldh family oxidoreductase |
| RA | NZ_CP022686 | 3,114,653 | A→C | 5.7% | V36G (GTC→GGC) | CIW80_RS15500 ← | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 3,136,940 | T→G | 11.3% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,150,252 | T→G | 10.0% | F20V (TTT→GTT) | rdcB → | YjcZ‑like family protein |
| RA | NZ_CP022686 | 3,184,651 | A→C | 7.7% | intergenic (‑98/+18) | cutA ← / ← dcuA | divalent cation tolerance protein CutA/anaerobic C4‑dicarboxylate transporter DcuA |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,317,667 | A→T | 15.6% | intergenic (+85/+34) | lptG → / ← yjgR | LPS export ABC transporter permease LptG/DUF853 domain‑containing protein |
| RA | NZ_CP022686 | 3,348,357 | T→G | 7.1% | intergenic (‑173/‑27) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,390,605 | T→G | 17.3% | K146N (AAA→AAC) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 11.4% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,444,711 | C→A | 8.1% | L527L (CTG→CTT) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,461,200 | C→A | 12.6% | intergenic (‑9/+26) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,218 | G→C | 12.3% | intergenic (‑27/+8) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,223 | G→T | 16.9% | intergenic (‑32/+3) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 17.4% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,468,365 | C→G | 5.6% | G302G (GGC→GGG) | yjjU → | patatin family protein |
| RA | NZ_CP022686 | 3,493,370 | T→G | 7.2% | K195N (AAA→AAC) | arcA ← | two‑component system response regulator ArcA |
| RA | NZ_CP022686 | 3,638,635 | T→G | 5.1% | T10P (ACG→CCG) | speE ← | polyamine aminopropyltransferase |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,518 | C→A | 9.8% | C9F (TGC→TTC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,714,337 | A→C | 8.8% | D273A (GAC→GCC) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | NZ_CP022686 | 3,734,367 | T→G | 27.6% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,380 | T→G | 17.3% | L229R (CTC→CGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,748,050 | T→G | 5.3% | K22N (AAA→AAC) | CIW80_RS18735 ← | hypothetical protein |
| RA | NZ_CP022686 | 3,770,509 | A→T | 12.2% | intergenic (‑245/+218) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 12.4% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,868,846 | T→G | 11.3% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,895,534 | T→G | 8.1% | intergenic (‑140/+44) | CIW80_RS19510 ← / ← CIW80_RS19515 | protein YkgH/autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 3,925,289 | A→C | 20.0% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,925,296 | A→C | 7.3% | E158D (GAA→GAC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,925,304 | A→C | 16.4% | Q161P (CAG→CCG) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 8.9% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,940,724 | A→C | 11.4% | V308G (GTA→GGA) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,949,969 | T→G | 7.3% | D141A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,949,972 | T→G | 8.2% | N140T (AAC→ACC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,981,933 | T→G | 13.5% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,014,242 | A→T | 12.5% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,133,850 | T→G | 14.9% | K113N (AAA→AAC) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,270,799 | A→C | 9.6% | T482P (ACG→CCG) | sucA → | 2‑oxoglutarate dehydrogenase E1 component |
| RA | NZ_CP022686 | 4,290,635 | T→G | 6.4% | T109P (ACC→CCC) | ybgS ← | YbgS‑like family protein |
| RA | NZ_CP022686 | 4,368,341 | T→G | 14.6% | D47A (GAC→GCC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,368,372 | T→G | 13.5% | S37R (AGC→CGC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,412,269 | A→C | 5.2% | F246V (TTT→GTT) | ybjT ← | SDR family oxidoreductase |
| RA | NZ_CP022686 | 4,440,334 | A→C | 21.1% | Q797H (CAA→CAC) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,570,086 | A→C | 6.5% | L68V (TTA→GTA) | pgaD ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine biosynthesis protein PgaD |
| RA | NZ_CP022686 | 4,587,091 | T→G | 13.4% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,605,579 | T→G | 15.4% | T56P (ACG→CCG) | CIW80_RS23010 ← | hypothetical protein |
| RA | NZ_CP022686 | 4,620,262 | A→C | 8.0% | intergenic (+6/+117) | CIW80_RS23110 → / ← CIW80_RS26565 | Exc2 family lipoprotein/hypothetical protein |
| RA | NZ_CP022686 | 4,642,951 | A→C | 9.8% | N732T (AAC→ACC) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,678,047 | A→C | 24.6% | intergenic (+45/‑76) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,783,334 | A→C | 15.9% | V32G (GTC→GGC) | mnmA ← | tRNA 2‑thiouridine(34) synthase MnmA |
| RA | NZ_CP022686 | 4,809,441 | T→G | 8.6% | G50G (GGT→GGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,916,128 | A→C | 6.3% | intergenic (+255/+30) | tdk → / ← CIW80_RS24885 | thymidine kinase/IS4 family transposase |
| RA | NZ_CP022686 | 4,951,512 | G→T | 17.3% | D36Y (GAT→TAT) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 4,951,531 | C→A | 10.4% | S42* (TCA→TAA) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 4,980,894 | G→C | 9.3% | L102V (CTT→GTT) | sapD ← | peptide ABC transporter ATP‑binding protein SapD |
| RA | NZ_CP022686 | 4,980,895 | A→C | 12.8% | C101W (TGT→TGG) | sapD ← | peptide ABC transporter ATP‑binding protein SapD |
| RA | NZ_CP022686 | 5,043,558 | T→C | 6.9% | S1063S (AGT→AGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,648 | G→C | 6.4% | V1093V (GTG→GTC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,178 | T→G | 13.1% | I1270S (ATC→AGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 2,031 | G→A | 100% | intergenic (‑235/‑1500) | putative rom (RNA I inhibition modulator protein) ← / → ompA | –/– |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,595 | Δ15 bp | 100% | [IL2wt no signal] | [IL2wt no signal] | |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,637 | C→G | 75.5% | T10S (ACC→AGC) ‡ | IL2wt no signal → | |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,638 | C→G | 75.7% | T10T (ACC→ACG) ‡ | IL2wt no signal → | |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,639 | C→T | 76.0% | Q11* (CAG→TAG) | IL2wt no signal → | |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,642 | C→G | 75.6% | L12V (CTG→GTG) ‡ | IL2wt no signal → | |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,643 | T→G | 76.0% | L12R (CTG→CGG) ‡ | IL2wt no signal → | |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 4,019 | +CAT | 7.9% | intergenic (+12/+37) | IL2wt no signal → / ← annotated as hok_sok locus | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 189–2618 | 3084–2957 | 340–2896 | 14737 [13531] | [13707] 14789 | JNG15_RS00005–mobA | JNG15_RS00005,JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMut‑Ompa‑D5‑IL2wt‑His6 | 4746–4861 | 5478–5074 | 214–733 | 6580 [6364] | [0] NA | [putative HTH domain protein] | [putative HTH domain protein] |