mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 75,475 | C→G | 8.2% | D97H (GAC→CAC) | dosP ← | oxygen‑sensing cyclic‑di‑GMP phosphodiesterase |
| RA | NZ_CP022686 | 177,506 | T→G | 7.2% | Q140H (CAA→CAC) | uidB ← | glucuronide transporter |
| RA | NZ_CP022686 | 298,027 | A→C | 12.5% | F60C (TTT→TGT) | chbC ← | PTS N,N'‑diacetylchitobiose transporter subunit IIC |
| RA | NZ_CP022686 | 349,106 | A→C | 13.7% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 360,227 | T→G | 17.4% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 556,942 | G→T | 15.4% | intergenic (+126/‑722) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 596,637 | T→G | 11.7% | G54G (GGT→GGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,295 | T→G | 14.6% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 636,713 | A→C | 10.9% | R452R (CGT→CGG) | clbM ← | precolibactin export MATE transporter ClbM |
| RA | NZ_CP022686 | 651,848 | A→C | 11.8% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 694,391 | C→A | 11.2% | intergenic (+151/‑45) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,457 | G→T | 14.5% | E8* (GAA→TAA) | CIW80_RS03560 → | PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 764,997 | T→G | 16.1% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 765,014 | A→T | 11.3% | V35V (GTT→GTA) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,435 | C→A | 19.1% | intergenic (‑24/+203) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,448 | T→A | 15.5% | intergenic (‑37/+190) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 878,883 | T→G | 8.2% | intergenic (+75/+45) | yohD → / ← yohF | DedA family protein/SDR family oxidoreductase |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 1,000,401 | A→C | 11.6% | V955G (GTG→GGG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,005,073 | A→C | 7.0% | E376D (GAA→GAC) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,005,085 | C→A | 13.8% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,047,906 | G→T | 7.5% | intergenic (‑136/+28) | nuoM ← / ← nuoL | NADH‑quinone oxidoreductase subunit M/NADH‑quinone oxidoreductase subunit L |
| RA | NZ_CP022686 | 1,065,978 | A→C | 9.9% | F37V (TTT→GTT) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,174,272 | A→C | 19.9% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,174,310 | G→T | 9.6% | intergenic (+39/‑5) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,209,908 | T→G | 22.2% | D396A (GAC→GCC) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,213,479 | T→G | 20.6% | G420G (GGA→GGC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,237,935 | A→C | 8.6% | G297G (GGT→GGG) | tmcA ← | tRNA cytosine(34) acetyltransferase TmcA |
| RA | NZ_CP022686 | 1,249,393 | C→A | 9.0% | intergenic (‑40/+46) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | NZ_CP022686 | 1,269,551 | T→G | 7.3% | K1124N (AAA→AAC) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,276,970 | A→C | 8.7% | G414G (GGT→GGG) | der ← | ribosome biogenesis GTPase Der |
| RA | NZ_CP022686 | 1,280,117 | T→G | 7.5% | N8H (AAC→CAC) | yfgM ← | ancillary SecYEG translocon subunit YfgM |
| RA | NZ_CP022686 | 1,353,233 | A→C | 10.5% | V72G (GTT→GGT) | yfiF ← | tRNA/rRNA methyltransferase |
| RA | NZ_CP022686 | 1,360,724 | G→T | 13.4% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,504,310 | G→T | 12.3% | M249I (ATG→ATT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,339 | C→A | 18.8% | P259Q (CCA→CAA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,361 | G→T | 21.7% | V266V (GTG→GTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,535,353 | G→T | 34.4% | M31I (ATG→ATT) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,535,365 | A→C | 27.8% | K35N (AAA→AAC) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,619,248 | G→T | 7.5% | intergenic (+37/+280) | yqeG → / ← CIW80_RS07990 | amino acid permease/tRNA‑Gly |
| RA | NZ_CP022686 | 1,632,501 | T→G | 8.9% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,674,224 | T→G | 13.3% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 14.1% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,730,016 | T→G | 7.9% | R41R (CGT→CGG) | CIW80_RS08540 → | integrase arm‑type DNA‑binding domain‑containing protein |
| RA | NZ_CP022686 | 1,744,265 | A→C | 6.4% | N329T (AAC→ACC) | CIW80_RS08650 → | IS3 family transposase |
| RA | NZ_CP022686 | 1,785,695 | T→G | 8.2% | pseudogene (16/186 nt) | CIW80_RS08875 ← | zinc‑ribbon domain‑containing protein |
| RA | NZ_CP022686 | 1,833,745 | T→G | 19.7% | N468H (AAC→CAC) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,889,761 | A→C | 5.9% | V459G (GTT→GGT) | ygiQ ← | YgiQ family radical SAM protein |
| RA | NZ_CP022686 | 1,925,332 | A→C | 11.6% | N151T (AAC→ACC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,954,923 | T→G | 15.3% | T92P (ACG→CCG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | NZ_CP022686 | 1,965,144 | C→G | 8.9% | R96P (CGC→CCC) | nfeF ← | NADPH‑dependent ferric chelate reductase |
| RA | NZ_CP022686 | 2,049,097 | A→T | 14.9% | R253R (CGT→CGA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,076,588 | C→A | 6.6% | intergenic (+58/‑175) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,110,457 | T→G | 10.2% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 8.5% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,148,109 | T→G | 9.8% | V124G (GTG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,115 | T→G | 10.4% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,136 | T→G | 10.4% | V133G (GTT→GGT) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,185,075 | A→C | 14.4% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,188,229 | G→T | 7.8% | intergenic (‑98/+67) | rplN ← / ← rpsQ | 50S ribosomal protein L14/30S ribosomal protein S17 |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,394,287 | T→G | 23.5% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,398,885 | A→C | 8.2% | S203R (AGC→CGC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,398,896 | A→C | 12.3% | K206N (AAA→AAC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,460,526 | A→C | 9.5% | V18G (GTG→GGG) | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,576 | C→A | 12.8% | M1M (ATG→ATT) † | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,581 | A→C | 24.5% | intergenic (‑3/‑155) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,470,422 | T→G | 10.4% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,516,426 | T→A | 11.0% | G612G (GGT→GGA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,546,423 | A→C | 10.1% | V85V (GTT→GTG) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 12.7% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,617,885 | T→G | 6.2% | K190N (AAA→AAC) | ilvB ← | acetolactate synthase large subunit |
| RA | NZ_CP022686 | 2,632,838 | A→C | 9.0% | A53A (GCT→GCG) | dgoT ← | MFS transporter |
| RA | NZ_CP022686 | 2,677,646 | T→G | 8.6% | K82N (AAA→AAC) | atpD ← | F0F1 ATP synthase subunit beta |
| RA | NZ_CP022686 | 2,717,385 | T→G | 6.7% | F96V (TTT→GTT) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,718,627 | T→G | 6.4% | F510V (TTC→GTC) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,736,585 | T→A | 10.0% | Y183N (TAC→AAC) | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,754,975 | C→A | 5.8% | E5* (GAA→TAA) | cyaY ← | iron donor protein CyaY |
| RA | NZ_CP022686 | 2,758,109 | A→C | 7.7% | N34T (AAC→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,769,166 | C→A | 10.6% | C57F (TGC→TTC) | rarD ← | EamA family transporter RarD |
| RA | NZ_CP022686 | 2,769,196 | A→C | 17.5% | F47C (TTT→TGT) | rarD ← | EamA family transporter RarD |
| RA | NZ_CP022686 | 2,780,110 | T→G | 7.9% | F677C (TTT→TGT) | metE → | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
| RA | NZ_CP022686 | 2,793,267 | T→G | 6.2% | D412A (GAC→GCC) | fdrA ← | acyl‑CoA synthetase FdrA |
| RA | NZ_CP022686 | 2,801,817 | T→G | 10.0% | Y32S (TAC→TCC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,834,886 | A→C | 10.6% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,868,740 | T→G | 21.6% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 13.0% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,871,422 | T→G | 9.5% | N149T (AAC→ACC) | fdnG ← | formate dehydrogenase‑N subunit alpha |
| RA | NZ_CP022686 | 2,961,318 | A→C | 11.9% | intergenic (+96/‑277) | murI → / → CIW80_RS14765 | glutamate racemase/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,981,612 | A→C | 6.9% | T567P (ACC→CCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,981,625 | A→C | 6.4% | D571A (GAC→GCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 3,020,188 | C→A | 13.0% | F119L (TTC→TTA) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,023,689 | T→G | 5.1% | V55V (GTA→GTC) | sorE ← | L‑sorbose 1‑phosphate reductase |
| RA | NZ_CP022686 | 3,136,923 | A→C | 11.1% | S167A (TCG→GCG) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,163,972 | G→T | 7.9% | E406* (GAA→TAA) | melA → | alpha‑galactosidase |
| RA | NZ_CP022686 | 3,177,069 | T→G | 5.2% | T249P (ACC→CCC) | cadA ← | lysine decarboxylase CadA |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,200,595 | A→C | 6.8% | V199G (GTT→GGT) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
| RA | NZ_CP022686 | 3,297,333 | T→G | 11.7% | F828V (TTT→GTT) | mgtA → | magnesium‑translocating P‑type ATPase |
| RA | NZ_CP022686 | 3,297,360 | T→G | 7.3% | L837V (TTA→GTA) | mgtA → | magnesium‑translocating P‑type ATPase |
| RA | NZ_CP022686 | 3,324,171 | T→G | 6.4% | pseudogene (400/467 nt) | CIW80_RS16540 ← | DUF1643 domain‑containing protein |
| RA | NZ_CP022686 | 3,348,342 | A→T | 9.8% | intergenic (‑158/‑42) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,390,614 | G→T | 9.7% | A143A (GCC→GCA) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,461,215 | A→T | 10.0% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,218 | G→C | 13.6% | intergenic (‑27/+8) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 20.2% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,574,991 | A→C | 6.1% | F182V (TTC→GTC) | sgrR ← | DNA‑binding transcriptional regulator SgrR |
| RA | NZ_CP022686 | 3,604,564 | G→T | 13.8% | intergenic (+80/‑151) | lpxC → / → secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| RA | NZ_CP022686 | 3,628,850 | A→C | 8.6% | K313N (AAA→AAC) | aceF → | pyruvate dehydrogenase complex dihydrolipoyllysine‑residue acetyltransferase |
| RA | NZ_CP022686 | 3,652,079 | T→G | 11.3% | intergenic (‑88/+24) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,734,367 | T→G | 20.4% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,380 | T→G | 13.7% | L229R (CTC→CGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,776,894 | G→T | 6.1% | L132F (TTG→TTT) | CIW80_RS18945 → | inovirus‑type Gp2 protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 12.4% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,798,092 | C→A | 8.7% | F333L (TTC→TTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,852,459 | T→G | 7.6% | N178T (AAC→ACC) | phoE ← | phosphoporin PhoE |
| RA | NZ_CP022686 | 3,868,846 | T→G | 12.7% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,868,864 | A→C | 11.1% | S377A (TCG→GCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,885,455 | T→A | 10.6% | I1403I (ATT→ATA) | fdeC → | inverse autotransporter adhesin FdeC |
| RA | NZ_CP022686 | 3,925,304 | A→C | 11.4% | Q161P (CAG→CCG) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,977,656 | A→C | 10.6% | K88N (AAA→AAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,979,381 | T→G | 7.5% | L96R (CTT→CGT) | brnQ → | branched‑chain amino acid transporter carrier protein BrnQ |
| RA | NZ_CP022686 | 4,014,242 | A→T | 8.8% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,019,028 | A→C | 7.9% | D259A (GAC→GCC) | lon → | endopeptidase La |
| RA | NZ_CP022686 | 4,032,292 | A→C | 17.3% | E106D (GAA→GAC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,056,962 | C→A | 16.9% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,056,987 | G→C | 10.6% | D146H (GAC→CAC) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,133,850 | T→G | 14.9% | K113N (AAA→AAC) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,214,457 | G→T | 11.9% | intergenic (‑30/+5) | CIW80_RS21095 ← / ← CIW80_RS21100 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,290,599 | T→G | 8.3% | T121P (ACC→CCC) | ybgS ← | YbgS‑like family protein |
| RA | NZ_CP022686 | 4,331,905 | A→C | 10.8% | G300G (GGT→GGG) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,368,372 | T→G | 11.3% | S37R (AGC→CGC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,440,324 | C→A | 11.3% | P794Q (CCG→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,334 | A→C | 13.8% | Q797H (CAA→CAC) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,485,614 | T→G | 10.7% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,535,285 | A→C | 9.7% | K97T (AAG→ACG) | appA → | bifunctional acid phosphatase/4‑phytase |
| RA | NZ_CP022686 | 4,562,574 | C→G | 9.0% | A132P (GCC→CCC) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | NZ_CP022686 | 4,632,182 | T→G | 8.9% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,712,763 | A→C | 18.4% | A52A (GCT→GCG) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,764,877 | T→G | 17.2% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,880 | T→G | 8.7% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,904 | G→T | 12.4% | intergenic (‑84/‑177) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,914 | C→A | 11.1% | intergenic (‑94/‑167) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,809,441 | T→G | 9.0% | G50G (GGT→GGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,814,990 | T→G | 9.4% | F71V (TTT→GTT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,905,221 | T→G | 16.0% | L116R (CTT→CGT) | CIW80_RS24815 → | coenzyme F390 synthetase |
| RA | NZ_CP022686 | 4,918,873 | T→G | 7.6% | Q378H (CAA→CAC) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,951,536 | G→C | 10.6% | A44P (GCC→CCC) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 5,001,164 | A→C | 11.1% | N163T (AAC→ACC) | ompG → | monomeric porin OmpG |
| RA | NZ_CP022686 | 5,042,304 | T→G | 12.4% | N645K (AAT→AAG) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,347 | A→G | 6.8% | N993S (AAT→AGT) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,558 | T→C | 7.9% | S1063S (AGT→AGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,641 | C→T | 5.1% | N1424N (AAC→AAT) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMUT1‑hok‑empty | 4,123:1 | +T | 94.1% | intergenic (‑341/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,127 | C→A | 100% | intergenic (‑345/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,132 | 4 bp→TA | 100% | intergenic (‑350/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 187–2618 | 3085–2957 | 340–2899 | 9744 [9626] | [9556] 9695 | JNG15_RS00005–mobA | JNG15_RS00005,JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMUT1‑hok‑empty | 1263–1317 | 3984–1582 | 266–2722 | 3802 [3537] | [3690] 3762 | putative HTH domain protein–putative rom (RNA I inhibition modulator protein) | putative HTH domain protein,uncharacterized protein,hypothetical protein,putative rom (RNA I inhibition modulator protein) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 2705754 = | NA (NA) | 4 (0.020) | 4/234 | NT | NA | noncoding (283/2903 nt) | CIW80_RS13550 | 23S ribosomal RNA |
| ? | NZ_CP022686 | = 2705755 | NA (NA) | noncoding (284/2903 nt) | CIW80_RS13550 | 23S ribosomal RNA | |||||
| * | ? | pMUT1‑hok‑empty | 456 = | 2873 (0.450) | 4229 (0.670) | 186/250 | NT | 67.3% | intergenic (–/+1261) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | 4136 = | 1229 (0.190) | intergenic (‑354/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||
| * | ? | pMUT1‑hok‑empty | = 491 | 4213 (0.660) | 3175 (0.630) | 140/200 | NT | 58.0% | intergenic (–/+1226) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | = 4098 | 1228 (0.240) | intergenic (‑316/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||