mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 87,520 | G→T | 8.1% | R217S (CGT→AGT) | yddA ← | ABC transporter ATP‑binding protein/permease |
| RA | NZ_CP022686 | 119,184 | T→G | 9.8% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 269,554 | A→C | 6.4% | G269G (GGT→GGG) | selO ← | protein adenylyltransferase SelO |
| RA | NZ_CP022686 | 340,516 | A→C | 12.1% | F31V (TTT→GTT) | ydjK ← | MFS transporter |
| RA | NZ_CP022686 | 349,106 | A→C | 10.2% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 377,307 | A→C | 11.8% | K147N (AAA→AAC) | manX → | PTS mannose transporter subunit IIAB |
| RA | NZ_CP022686 | 410,041 | G→C | 11.1% | Q365E (CAG→GAG) | zwf ← | glucose‑6‑phosphate dehydrogenase |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 524,842 | T→G | 11.0% | V203G (GTC→GGC) | yedE → | selenium metabolism membrane protein YedE/FdhT |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 601,295 | T→G | 18.5% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 20.1% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,337 | T→G | 11.5% | V1621G (GTT→GGT) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 693,001 | A→C | 6.8% | N114T (AAC→ACC) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 693,005 | A→C | 10.8% | L115L (CTA→CTC) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 694,391 | C→A | 9.1% | intergenic (+151/‑45) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,402 | G→T | 8.9% | intergenic (+162/‑34) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,406 | G→T | 14.8% | intergenic (+166/‑30) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 764,997 | T→G | 13.0% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 765,001 | A→T | 10.5% | Y40N (TAC→AAC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 766,756 | C→G | 14.1% | D291H (GAC→CAC) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | NZ_CP022686 | 777,337 | A→C | 9.7% | R225R (CGT→CGG) | gmd ← | GDP‑mannose 4,6‑dehydratase |
| RA | NZ_CP022686 | 777,365 | A→C | 12.0% | L216R (CTG→CGG) | gmd ← | GDP‑mannose 4,6‑dehydratase |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 828,846 | A→C | 16.4% | L189R (CTT→CGT) | gatY ← | tagatose‑bisphosphate aldolase subunit GatY |
| RA | NZ_CP022686 | 829,441 | C→A | 23.2% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,452 | G→T | 15.3% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,482 | C→A | 6.5% | intergenic (‑71/+156) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 837,573 | C→A | 14.0% | intergenic (‑146/+77) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 857,274 | T→G | 7.8% | G78G (GGT→GGG) | yehL → | MoxR family ATPase |
| RA | NZ_CP022686 | 859,943 | T→G | 10.6% | L602V (TTA→GTA) | yehM → | DUF5682 family protein |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,046 | G→T | 13.6% | intergenic (+115/‑142) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 12.1% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,127 | A→C | 12.1% | intergenic (+196/‑61) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 957,112 | T→G | 12.8% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,000,401 | A→C | 12.7% | V955G (GTG→GGG) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,000,431 | T→G | 29.8% | D945A (GAC→GCC) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,005,085 | C→A | 12.1% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,011,419 | T→A | 16.9% | intergenic (‑268/‑5) | glpT ← / → glpA | glycerol‑3‑phosphate transporter/anaerobic glycerol‑3‑phosphate dehydrogenase subunit A |
| RA | NZ_CP022686 | 1,022,752 | T→G | 9.3% | T44P (ACG→CCG) | yfaZ ← | YfaZ family outer membrane protein |
| RA | NZ_CP022686 | 1,064,076 | A→C | 6.8% | T161P (ACG→CCG) | yfbR → | 5'‑deoxynucleotidase |
| RA | NZ_CP022686 | 1,065,978 | A→C | 8.5% | F37V (TTT→GTT) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,065,997 | A→C | 9.6% | A30A (GCT→GCG) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,100,944 | T→G | 10.5% | D187A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,197,147 | T→G | 9.8% | L76R (CTG→CGG) | murQ → | N‑acetylmuramic acid 6‑phosphate etherase |
| RA | NZ_CP022686 | 1,209,908 | T→G | 19.0% | D396A (GAC→GCC) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,360,724 | G→T | 12.3% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,371,093 | A→C | 9.5% | Y36S (TAC→TCC) | bamD → | outer membrane protein assembly factor BamD |
| RA | NZ_CP022686 | 1,410,626 | T→G | 9.2% | V123G (GTC→GGC) | proW → | glycine betaine/L‑proline ABC transporter permease ProW |
| RA | NZ_CP022686 | 1,504,289 | T→G | 8.4% | R242R (CGT→CGG) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,305 | A→T | 10.4% | N248Y (AAT→TAT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,310 | G→T | 15.4% | M249I (ATG→ATT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,323 | C→A | 16.9% | P254T (CCT→ACT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,339 | C→A | 19.2% | P259Q (CCA→CAA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,355 | T→A | 10.4% | A264A (GCT→GCA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,518,282 | T→G | 9.1% | T281P (ACC→CCC) | gudX ← | enolase C‑terminal domain‑like protein |
| RA | NZ_CP022686 | 1,535,319 | T→G | 14.1% | M20R (ATG→AGG) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,546,981 | T→A | 7.6% | intergenic (+3/‑31) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,546,996 | T→A | 15.2% | intergenic (+18/‑16) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,000 | G→C | 15.0% | intergenic (+22/‑12) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,003 | G→C | 11.4% | intergenic (+25/‑9) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,395 | A→C | 12.5% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 11.1% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,564,589 | A→C | 8.1% | N197T (AAC→ACC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,566,203 | A→C | 10.3% | N735T (AAC→ACC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,566,209 | A→C | 11.6% | K737T (AAG→ACG) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,597,235 | T→G | 14.1% | N19H (AAC→CAC) | thyA ← | thymidylate synthase |
| RA | NZ_CP022686 | 1,633,846 | T→G | 27.9% | N253T (AAC→ACC) | yqeB ← | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | NZ_CP022686 | 1,655,985 | A→C | 7.5% | F221V (TTT→GTT) | prfB ← | peptide chain release factor 2 |
| RA | NZ_CP022686 | 1,674,224 | T→G | 12.3% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 12.2% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 9.3% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,705,974 | T→G | 14.6% | intergenic (‑584/‑71) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,706,032 | G→T | 12.3% | intergenic (‑642/‑13) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,716,145 | A→C | 11.9% | T42P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,202 | A→C | 11.3% | T61P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,796,825 | T→G | 13.9% | intergenic (+38/‑57) | agn43 → / → CIW80_RS08945 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 1,832,023 | T→G | 10.4% | N355T (AAC→ACC) | gspE ← | type II secretion system ATPase GspE |
| RA | NZ_CP022686 | 1,833,749 | G→T | 15.8% | V466V (GTC→GTA) ‡ | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,833,750 | A→T | 8.9% | V466D (GTC→GAC) ‡ | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,911,602 | T→G | 8.3% | N224T (AAC→ACC) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 1,965,159 | A→C | 9.2% | L91R (CTG→CGG) | nfeF ← | NADPH‑dependent ferric chelate reductase |
| RA | NZ_CP022686 | 1,975,137 | A→C | 8.6% | intergenic (+6/‑57) | ebgC → / → ygjI | beta‑galactosidase subunit beta/amino acid permease |
| RA | NZ_CP022686 | 2,009,589 | A→C | 7.6% | L191R (CTT→CGT) | tdcE ← | 2‑ketobutyrate formate‑lyase/pyruvate formate‑lyase |
| RA | NZ_CP022686 | 2,016,170 | A→C | 7.4% | noncoding (104/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,027,390 | A→C | 10.3% | K80N (AAA→AAC) | agaE → | PTS N‑acetylgalactosamine transporter subunit IID |
| RA | NZ_CP022686 | 2,037,497 | A→C | 6.5% | S500R (AGC→CGC) | lpoA → | penicillin‑binding protein activator LpoA |
| RA | NZ_CP022686 | 2,049,089 | T→G | 16.2% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 10.2% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,097 | A→T | 14.6% | R253R (CGT→CGA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,168 | A→C | 7.8% | G614G (GGT→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,070,812 | A→C | 7.3% | intergenic (‑104/‑145) | greA ← / → dacB | transcription elongation factor GreA/serine‑type D‑Ala‑D‑Ala carboxypeptidase |
| RA | NZ_CP022686 | 2,076,554 | T→G | 9.8% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,110,457 | T→G | 12.5% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 8.5% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,123,241 | A→C | 8.0% | F208V (TTT→GTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,148,109 | T→G | 9.4% | V124G (GTG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,122 | T→G | 9.3% | S128R (AGT→AGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,141 | T→G | 11.5% | F135V (TTC→GTC) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,172,177 | A→C | 8.1% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,179,877 | C→G | 7.8% | K35N (AAG→AAC) | rplQ ← | 50S ribosomal protein L17 |
| RA | NZ_CP022686 | 2,184,330 | G→T | 15.7% | F64L (TTC→TTA) | rplO ← | 50S ribosomal protein L15 |
| RA | NZ_CP022686 | 2,185,075 | A→C | 9.6% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,192,062 | A→C | 6.9% | R69R (CGT→CGG) | rplD ← | 50S ribosomal protein L4 |
| RA | NZ_CP022686 | 2,209,074 | C→A | 5.3% | A258A (GCG→GCT) | chiA ← | bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,209,288 | G→T | 5.9% | T187N (ACC→AAC) | chiA ← | bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,275,849 | T→G | 5.4% | V73G (GTT→GGT) | feoA → | ferrous iron transporter A |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,353,098 | T→G | 6.2% | F83V (TTT→GTT) | yhhN → | lysoplasmalogenase |
| RA | NZ_CP022686 | 2,386,496 | T→G | 9.5% | K417N (AAA→AAC) | prlC ← | oligopeptidase A |
| RA | NZ_CP022686 | 2,398,896 | A→C | 14.1% | K206N (AAA→AAC) | hutW → | heme anaerobic degradation radical SAM methyltransferase ChuW/HutW |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,460,522 | T→A | 8.8% | V19V (GTA→GTT) | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,526 | A→C | 11.5% | V18G (GTG→GGG) | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,460,579 | T→A | 18.5% | intergenic (‑1/‑157) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,460,581 | A→C | 16.9% | intergenic (‑3/‑155) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,516,216 | T→G | 7.3% | S542S (TCT→TCG) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,572,705 | A→C | 14.3% | G191G (GGT→GGG) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,572,721 | A→C | 15.3% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 7.5% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,605,561 | A→C | 5.8% | V153G (GTT→GGT) | nepI ← | purine ribonucleoside efflux pump NepI |
| RA | NZ_CP022686 | 2,628,001 | T→G | 7.0% | S40R (AGC→CGC) | ibpB ← | heat shock chaperone IbpB |
| RA | NZ_CP022686 | 2,638,855 | C→A | 8.8% | intergenic (‑170/+70) | yidB ← / ← gyrB | YidB family protein/DNA topoisomerase (ATP‑hydrolyzing) subunit B |
| RA | NZ_CP022686 | 2,643,712 | A→C | 8.6% | L413R (CTG→CGG) | dnaA ← | chromosomal replication initiator protein DnaA |
| RA | NZ_CP022686 | 2,703,299 | A→C | 7.3% | intergenic (‑203/‑277) | yieP ← / → CIW80_RS13540 | FadR/GntR family transcriptional regulator/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,743,565 | C→G | 8.6% | noncoding (67/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,758,109 | A→C | 8.1% | N34T (AAC→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,111 | G→C | 5.9% | A35P (GCA→CCA) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,128 | A→C | 7.5% | K40N (AAA→AAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,153 | A→C | 5.8% | T49P (ACG→CCG) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,162 | G→T | 9.0% | D52Y (GAT→TAT) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,168 | A→C | 6.5% | N54H (AAC→CAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,801,817 | T→G | 7.1% | Y32S (TAC→TCC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,808,127 | T→G | 11.4% | V441G (GTC→GGC) | ubiB → | ubiquinone biosynthesis regulatory protein kinase UbiB |
| RA | NZ_CP022686 | 2,810,014 | A→C | 5.4% | S233S (TCA→TCC) | tatC → | Sec‑independent protein translocase subunit TatC |
| RA | NZ_CP022686 | 2,834,886 | A→C | 9.0% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,834,898 | A→C | 8.9% | K601N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,868,740 | T→G | 19.9% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,742 | A→C | 13.8% | P21P (CCT→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 10.0% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,920,385 | C→A | 6.3% | A54E (GCA→GAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,989,627 | T→G | 7.4% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,020,229 | T→G | 10.2% | V133G (GTC→GGC) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,080,461 | T→G | 10.7% | R158R (CGT→CGG) | CIW80_RS15320 → | Ldh family oxidoreductase |
| RA | NZ_CP022686 | 3,114,640 | A→C | 5.5% | G40G (GGT→GGG) | CIW80_RS15500 ← | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 3,114,653 | A→C | 6.4% | V36G (GTC→GGC) | CIW80_RS15500 ← | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 3,136,923 | A→C | 8.5% | S167A (TCG→GCG) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,136,940 | T→G | 9.7% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,200,595 | A→C | 7.6% | V199G (GTT→GGT) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
| RA | NZ_CP022686 | 3,218,260 | T→G | 7.6% | L233R (CTT→CGT) | miaA → | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA |
| RA | NZ_CP022686 | 3,265,084 | T→G | 17.7% | N77T (AAC→ACC) | ytfJ ← | YtfJ family protein |
| RA | NZ_CP022686 | 3,278,016 | G→C | 8.4% | D286H (GAC→CAC) | ytfQ → | galactofuranose ABC transporter substrate‑binding protein YtfQ |
| RA | NZ_CP022686 | 3,281,004 | T→G | 11.8% | F75V (TTT→GTT) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,348,359 | A→T | 6.0% | intergenic (‑175/‑25) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,371 | T→G | 8.7% | intergenic (‑187/‑13) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,374 | C→G | 6.2% | intergenic (‑190/‑10) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,363,064 | C→A | 9.4% | intergenic (+763/‑28) | CIW80_RS16815 → / → CIW80_RS16820 | helix‑turn‑helix domain‑containing protein/Alw26I/Eco31I/Esp3I family type II restriction adenine‑specific DNA‑methyltransferase |
| RA | NZ_CP022686 | 3,387,116 | A→C | 9.5% | F86V (TTT→GTT) | sgcA ← | SgcA family PTS sugar transporter subunit IIA |
| RA | NZ_CP022686 | 3,387,650 | A→C | 6.6% | V220G (GTC→GGC) | sgcQ ← | BtpA family protein SgcQ |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 12.8% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,461,215 | A→T | 15.7% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,223 | G→T | 11.7% | intergenic (‑32/+3) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 16.3% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,231 | C→G | 10.4% | noncoding (82/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,496,452 | A→C | 13.0% | I273L (ATC→CTC) | thrA → | bifunctional aspartate kinase/homoserine dehydrogenase I |
| RA | NZ_CP022686 | 3,516,069 | T→G | 6.7% | V211G (GTT→GGT) | nhaA → | Na+/H+ antiporter NhaA |
| RA | NZ_CP022686 | 3,526,230 | G→T | 8.7% | A209S (GCC→TCC) | dapB → | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| RA | NZ_CP022686 | 3,625,683 | T→G | 12.2% | A150A (GCT→GCG) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | NZ_CP022686 | 3,634,591 | G→T | 10.0% | D260Y (GAT→TAT) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | NZ_CP022686 | 3,634,614 | A→C | 9.9% | K267N (AAA→AAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | NZ_CP022686 | 3,652,079 | T→G | 7.4% | intergenic (‑88/+24) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,518 | C→A | 11.8% | C9F (TGC→TTC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,703,648 | A→C | 7.4% | T120P (ACG→CCG) | fabZ → | 3‑hydroxyacyl‑ACP dehydratase FabZ |
| RA | NZ_CP022686 | 3,734,367 | T→G | 17.4% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,770,509 | A→T | 9.5% | intergenic (‑245/+218) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,520 | G→T | 10.8% | intergenic (‑256/+207) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,524 | T→G | 9.8% | intergenic (‑260/+203) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 14.0% | L130V (TTA→GTA) ‡ | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,797,483 | A→T | 7.5% | L130F (TTA→TTT) ‡ | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,797,493 | G→T | 10.0% | G134C (GGT→TGT) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,806,265 | T→A | 7.4% | Y1586N (TAC→AAC) | cdiA → | contact‑dependent inhibition effector tRNA nuclease |
| RA | NZ_CP022686 | 3,868,846 | T→G | 7.6% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,935,324 | T→G | 10.8% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 10.8% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,949,969 | T→G | 8.7% | D141A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,949,972 | T→G | 7.2% | N140T (AAC→ACC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,950,302 | T→G | 5.4% | D30A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,977,656 | A→C | 6.7% | K88N (AAA→AAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,981,933 | T→G | 15.6% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 3,984,841 | T→G | 7.4% | R67R (CGT→CGG) | queA → | tRNA preQ1(34) S‑adenosylmethionine ribosyltransferase‑isomerase QueA |
| RA | NZ_CP022686 | 4,014,238 | C→G | 14.2% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,242 | A→T | 7.7% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,291 | G→T | 14.2% | intergenic (+137/‑207) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,033,367 | T→G | 5.0% | V342G (GTT→GGT) | amtB → | ammonium transporter AmtB |
| RA | NZ_CP022686 | 4,056,962 | C→A | 20.0% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,074,902 | G→T | 9.3% | S23* (TCG→TAG) | CIW80_RS20380 ← | hypothetical protein |
| RA | NZ_CP022686 | 4,079,363 | A→C | 8.6% | A158A (GCT→GCG) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | NZ_CP022686 | 4,133,839 | T→G | 15.6% | K117T (AAA→ACA) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,188,933 | C→A | 6.9% | G325C (GGC→TGC) | rlpA ← | endolytic peptidoglycan transglycosylase RlpA |
| RA | NZ_CP022686 | 4,188,944 | A→C | 6.7% | V321G (GTA→GGA) | rlpA ← | endolytic peptidoglycan transglycosylase RlpA |
| RA | NZ_CP022686 | 4,213,260 | T→G | 7.4% | C188W (TGT→TGG) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | NZ_CP022686 | 4,213,261 | A→T | 7.1% | M189L (ATG→TTG) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | NZ_CP022686 | 4,280,091 | T→G | 8.8% | V102G (GTC→GGC) | cydB → | cytochrome d ubiquinol oxidase subunit II |
| RA | NZ_CP022686 | 4,290,599 | T→G | 6.2% | T121P (ACC→CCC) | ybgS ← | YbgS‑like family protein |
| RA | NZ_CP022686 | 4,331,905 | A→C | 6.3% | G300G (GGT→GGG) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,368,341 | T→G | 13.9% | D47A (GAC→GCC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,368,380 | T→G | 8.9% | N34T (AAC→ACC) | ybiY ← | glycyl‑radical enzyme activating protein |
| RA | NZ_CP022686 | 4,440,297 | T→A | 9.6% | V785D (GTT→GAT) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,334 | A→C | 19.3% | Q797H (CAA→CAC) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,485,614 | T→G | 11.2% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,620,262 | A→C | 7.8% | intergenic (+6/+117) | CIW80_RS23110 → / ← CIW80_RS26565 | Exc2 family lipoprotein/hypothetical protein |
| RA | NZ_CP022686 | 4,632,182 | T→G | 5.9% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,642,947 | G→C | 6.4% | E731Q (GAA→CAA) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,642,951 | A→C | 7.0% | N732T (AAC→ACC) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,678,041 | A→C | 17.6% | intergenic (+39/‑82) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,678,047 | A→C | 24.3% | intergenic (+45/‑76) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,712,763 | A→C | 17.8% | A52A (GCT→GCG) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,762,516 | T→G | 12.6% | K368N (AAA→AAC) | mfd ← | transcription‑repair coupling factor |
| RA | NZ_CP022686 | 4,764,877 | T→G | 14.2% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,880 | T→G | 7.2% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,889 | T→G | 7.7% | intergenic (‑69/‑192) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 11.9% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,814,990 | T→G | 19.1% | F71V (TTT→GTT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,826,160 | T→G | 6.4% | K250N (AAA→AAC) | sitA ← | iron/manganese ABC transporter substrate‑binding protein SitA |
| RA | NZ_CP022686 | 4,839,687 | T→G | 13.7% | N144T (AAC→ACC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,839,695 | A→T | 15.4% | I141I (ATT→ATA) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,852,202 | A→C | 7.2% | N149T (AAC→ACC) | dadA → | D‑amino acid dehydrogenase |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,905,178 | T→G | 10.8% | F102V (TTC→GTC) | CIW80_RS24815 → | coenzyme F390 synthetase |
| RA | NZ_CP022686 | 4,909,098 | C→G | 6.7% | noncoding (6/132 nt) | CIW80_RS24835 ← | RtT sRNA |
| RA | NZ_CP022686 | 4,916,118 | G→T | 6.6% | intergenic (+245/+40) | tdk → / ← CIW80_RS24885 | thymidine kinase/IS4 family transposase |
| RA | NZ_CP022686 | 4,951,521 | A→C | 10.1% | T39P (ACC→CCC) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 5,041,191 | G→A | 8.1% | A274A (GCG→GCA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,855 | T→A | 17.2% | G1162G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,149 | T→C | 5.5% | G1260G (GGT→GGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,614 | T→C | 6.9% | G1415G (GGT→GGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMUT1‑hok‑empty | 1,349 | G→T | 18.1% | intergenic (–/+368) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,369 | G→T | 8.3% | intergenic (–/+348) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,375 | Δ1 bp | 5.1% | intergenic (–/+342) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,376 | Δ1 bp | 92.3% | intergenic (–/+341) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,379 | G→T | 7.2% | intergenic (–/+338) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,407 | G→T | 7.6% | intergenic (–/+310) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,411 | C→A | 9.3% | intergenic (–/+306) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,413 | T→G | 6.7% | intergenic (–/+304) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,423 | G→T | 10.1% | intergenic (–/+294) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 1,431 | G→T | 10.4% | intergenic (–/+286) | – / ← putative HTH domain protein | –/– |
| RA | pMUT1‑hok‑empty | 2,084 | C→A | 44.3% | intergenic (‑50/‑107) | putative HTH domain protein ← / → uncharacterized protein | –/– |
| RA | pMUT1‑hok‑empty | 4,123:1 | +T | 94.2% | intergenic (‑341/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,127 | C→A | 100% | intergenic (‑345/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,132 | 4 bp→TA | 100% | intergenic (‑350/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 404–2619 | 3047–2957 | 339–2644 | 6552 [5857] | [6290] 6523 | [JNG15_RS00005]–mobA | [JNG15_RS00005],JNG15_RS00010,JNG15_RS00015,mobA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_MW240712 | 4 = | 0 (0.000) | 90 (0.010) +CAC |
43/244 | NT | 100% | intergenic (–/+203) | –/JNG15_RS00005 | –/helix‑turn‑helix domain‑containing protein |
| ? | NZ_MW240712 | = 3173 | 0 (0.000) | intergenic (+182/–) | mobA/– | plasmid mobilization protein MobA/– | |||||
| * | ? | pMUT1‑hok‑empty | 456 = | 3923 (0.450) | 5412 (0.620) | 233/250 | NT | 66.3% | intergenic (–/+1261) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | 4136 = | 1577 (0.180) | intergenic (‑354/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||
| * | ? | pMUT1‑hok‑empty | = 491 | 5888 (0.680) | 4534 (0.660) | 179/200 | NT | 59.1% | intergenic (–/+1226) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | = 4098 | 1578 (0.230) | intergenic (‑316/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||