| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 3,387,116 | A→C | 8.1% | F86V (TTT→GTT) | sgcA ← | SgcA family PTS sugar transporter subunit IIA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP022686 | 3,387,116 | 0 | A | C | 8.1% | 474.4 / 2.4 | 251 | F86V (TTT→GTT) | sgcA | SgcA family PTS sugar transporter subunit IIA |
| Reads supporting (aligned to +/- strand): ref base A (119/98); new base C (2/27); total (121/130) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.47e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 261 total aligned reads displayed.
CTGGCATTTCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCATT > NZ_CP022686/3386977‑3387254 | gCATTTCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGc > 8:614313/1‑140 (MQ=255) gCATTTCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGc > 8:1095193/1‑140 (MQ=255) aTTTCCCACTGCCGATAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTTAATGGTAAAAATATGTGCGTTGGCTTCTGTGGCGCTGACGCATAGAAGCAGCCAGAGGGGGGCGAACTCCTCTTTACCAAAGGCGa < 8:419569/140‑1 (MQ=255) tCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGCCGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCg > 3:711623/1‑140 (MQ=255) tCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCg > 7:29835/1‑140 (MQ=255) tCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCg > 5:597871/1‑140 (MQ=255) tCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGAGACCg > 6:1001760/1‑140 (MQ=255) cccACTGCCGCTAAGGGGTTTGGTTAATCAATAAACTGTAGTATGCGCTGAATGGTCAAAATATGTGCGGTGGCATCTGGGGGGCTGACGCAGATAAGCAGCATGAGGGGGTCGCACTCCTCGTTACCAAAGGCGACCgg < 6:611322/140‑1 (MQ=255) ccACTGCCGCAAAGCGTTGTGGCGAATCAAAAAACTGGCTTATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCggg < 5:746035/140‑1 (MQ=255) cTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTg > 5:133815/1‑140 (MQ=255) tGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGc > 4:1041277/1‑140 (MQ=255) gcaacgCGTGGGGGCGAATCAATAAACTGTCTGCTGCGCTGACTGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACCCAGAGAAGCAGCCAGACGGGGGCGCACTCCTCGTAACCAACGGCGACCGGGGTGCGTAg < 5:201753/135‑1 (MQ=255) gCTAAGCTTTGTGTCTAATCAATAAACGGGCTGATGCTCTGAGGTGACAAAAAATCTGCGTGGGCATCTGTGGCGCTGACGCAGAGAAGCAGACAGACGGGGGCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAg < 2:704423/140‑1 (MQ=255) gCTAAGCGTTGTGGCGAATCAATAACCTGGTTGAGGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCACCCAGACGGGGGCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAg < 6:157927/140‑1 (MQ=255) cacacgCGTTGTGTCCAATCAATAAACTGGCTGATGCGCTGAATGGCCAAAATATGGGCGTTGGACTCGGTGGCGCTGACGAAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAg < 1:731249/135‑1 (MQ=255) tacgCGTTGTTGCGAATCAATAAACTGGCGTATGCGCTGATAGTTCAAAATATGTGCGTTTCCATCTGTGGCGCTGAAGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCg < 6:853979/137‑1 (MQ=255) aGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCAGACGCATAGAAGAATCAAGACGGGGTAGAACTCCTCGTTACAAAAGGCTACCGGTGTGCGTAGAgtg > 8:165155/1‑140 (MQ=255) gCGTTGTGGCGAATCAATACACTGGCGGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCGGGGCCGCGGACGCAGTGAAGCAGCCAGACGGGGCCGCACTCCTCGTTACCACAGGCGACCGGGGTGCGTAGCgtgg < 7:851831/140‑1 (MQ=255) gCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGGGGCGCTGAGGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCgtgg < 8:889146/140‑1 (MQ=255) gCGTGGTGGCGAATCAATAACCTGGCTGATGCGCGGACTGGTCAAAATATGTGCGTTGGCAGCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCGCGTTACCAACGGCGACCGGGGTGCGTAGCgtgg < 2:1094990/140‑1 (MQ=255) tgtgGCGAATCAATAAACTGGCTGATGCTCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGCCGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGAt > 2:484678/1‑140 (MQ=255) gtgGCTATTCAATAAACTGGGTTATGCGCTGAATGGTAAAAATTTGTGGTTTGGCATATGTGGCGCTTACGCAGATAAGCAGCCAGAGGGGGTCGCACGCCTCTTAACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATa < 7:336146/140‑1 (MQ=255) gtgGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATa > 8:964557/1‑140 (MQ=255) ggggCTAATCAATAAACGGGCTGATGCGCTGAAGGGTAAAAATATGTGCGTGGGCATGTGTGGCGCTGACGAAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTAACCAACGGCGACCGGGGTGCGTAGCGTGGTGATa < 2:850796/138‑1 (MQ=255) ggCTAATAAATAAAGTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCCGCCAGACGGGGGCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACt < 4:612790/140‑1 (MQ=255) ggAATCAATAAACTGGCTGACGCGAGCATTGGTAAAATTTTGTGCGTTGGCAGCTGTGGCGCTGACGCAGATAAGCATCCTGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGa < 6:407061/139‑1 (MQ=255) ctaaTCAATAACCTGGCTGATGCGCTGAATGTTCAAAATATGTGCGTTGGCAGCTGTGGCGCTGACCCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAACCGCGACCGGGGTGCGTAGCGTGGTGATACTGa < 3:510139/138‑1 (MQ=255) cGAATCAATAACCTGGCTGATGCGCTGAATGGTCAAATTATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGa < 4:1166521/140‑1 (MQ=255) cGAATAAATAAACTTGCTGATGCGCTTAATGGTCAAAATTTGTGCGTTGTCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGa < 6:988486/140‑1 (MQ=255) taataaataAACTGCCTGATGCTCTGAATGTTATAAATATGTGCGTTGGCATATGTGCATCTGATTAAGAGAAGCACCCAGACGGGGTCGCACTCCTCTTAACCAACGGCGAACGGGGTGCGTAGCTTGGTGATACTGAc < 8:448696/139‑1 (MQ=255) taaTCAATAAACTGGTTGATGCGCTTAATGTTCAAAATTTGTGCGTTGGCATCTGTGGCGCTGACGCTTAGAAGCAGCCAGACGGGGTCGCACTCCTCTTTCCCAAACGCGACCGGGGTGCGTAGCGTGGTGATACTGAc < 6:221315/139‑1 (MQ=255) caaTCTATAAACTGGCTGTTCCGATGATAGGCCAAATATTGTGCGTTGGCATCTGTGCCGCTGACCCATTGAAGAAGCCTGACGGTGTCGCACTCCTCGTTACCAAACGCGACCGGGGGGCGTAGCGTGGTGATACTGAc < 6:879213/139‑1 (MQ=255) aaTCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACAAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGAcc > 1:120075/1‑140 (MQ=255) ggttgttGCGCTGAATGGTCAAAATATGTGCGTGGGCTTCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGttt < 4:1089351/134‑1 (MQ=255) ggCTGATGCGCTGATTGGTAAAAATAGGTGGGTTGGCATGTGGGGCGCTGACGCAGAGAAGCAGCCAGACGGGGGCGCACTCCTCGTTACAAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGttt < 6:525910/140‑1 (MQ=255) ggCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGttt < 2:316537/140‑1 (MQ=255) ggCTGAGGCGCTGAAGGGCAAAATTATTTGGGGTGGCTTGTGGGGGGATGACTAATAGAAGCATCCAGAGGTGGTCGCACTCCTCGTGACCAATGGCGACCGGGGTGCGTAGCGTGTTGATACTGACCTGATTATAGttt < 7:1085492/140‑1 (MQ=255) ggCGGATGCGCTGAATGGTCAAAATATGGGCGTGGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAACGCGACCGGGGTGCGTAGCGTGGTGACACTGACCTGATTATAGttt < 4:473586/140‑1 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAg < 4:716844/111‑1 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCg > 2:1180474/1‑113 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTg > 8:222738/1‑140 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTg > 6:684409/1‑140 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTg > 3:1185581/1‑140 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTg > 8:912076/1‑140 (MQ=255) gCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATAATGACCAGATAATAGTTTg > 1:134848/1‑140 (MQ=255) tGAGGCGCTGAAGGGTCAAAATATGTGCGTTGGCATCTGTGGCGGTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTGgcg < 8:287847/140‑1 (MQ=255) ctgtttGGTCAAAATTTGTGCGTTGGCAGCTGTGGCGCTGACGCTGAGATGCAGCCAGACGGGGGGGCACTCCGCGTTACAATTGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGct < 1:550027/135‑1 (MQ=255) cTGCATGGTCAAAATATGTGCGTTGGCAGCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGGCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGct < 4:722767/140‑1 (MQ=255) cTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGct < 3:1013747/140‑1 (MQ=255) cTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGGCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGct < 1:808613/140‑1 (MQ=255) aaTGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGCCGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGAGTGCGTAGCGTGATGATACTGACCTTATAATAGTTTGCGCCTTGCTCTg > 7:826328/1‑140 (MQ=255) tGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGCACGGGGTGCGTAGCGTGTTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGt > 4:623861/1‑140 (MQ=255) ggTAAAAATATGTCGGTTGGCTTCTGTGGAGCTGACGCAGAGAAGCTGCCCGACGGGGGCGCATTCCTCGTTCCCAAAGGCGACCGGGGGGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTc < 1:658000/140‑1 (MQ=255) tCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCgg > 4:379033/1‑140 (MQ=255) tCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTGGCGCCTTGCTCTGGTCgg > 4:576152/1‑140 (MQ=255) aaaaTATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGc > 4:804511/1‑140 (MQ=255) aaaTATGTGCGTTGGCATGTGGGGCGCTGACGCAGATAAGCAGCCAGACGGGGGCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCg < 2:174874/140‑1 (MQ=255) gtgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGCTACTGACCTGATTATAGTGTGCGCCTTGCTCTGGTCGGGAGTGAggg > 7:1134235/1‑139 (MQ=255) gtgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGc > 1:1135242/1‑140 (MQ=255) gggCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAACGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGc < 3:281094/138‑1 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGCCCGGGGTGCGTAGCGTGGTGATACTGCCCTGATTATAGTTTGCGCCGTGCTCTGGTCGGGCGTGCGGcc > 7:176469/1‑139 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCgg < 8:511656/75‑1 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCa > 1:1067261/1‑140 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCa > 3:57178/1‑140 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCa > 3:850617/1‑140 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCa > 6:480830/1‑140 (MQ=255) tgCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAACGCGACCGGGGTGCGTAGCGTGGTGCTACGGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCa > 5:393428/1‑140 (MQ=255) tGGCTTCTGTGGCGCGGACGCAGATAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAACGGCGACCGGGGTGCGTAGCGGGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCg < 8:47458/140‑1 (MQ=255) gtgCAGCTGTGGCGCTGACGCAGAGAAGCCGCCAGAGGGGGGCGCACGCCGAGTAACCAACCGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCg < 1:476159/138‑1 (MQ=255) gtgGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTgg > 6:12484/1‑140 (MQ=255) cTGACGCAGAGCAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAACGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTAt > 7:94262/1‑140 (MQ=255) cTGACGCAGAGAAGCAGACAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTATGTTCGGGCGTGAGGCAAGGCGCTTCCTGGTGCTAt > 5:115170/1‑140 (MQ=255) tGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATc < 4:857962/140‑1 (MQ=255) aCGCAGAGAAGCAGCCAGCCGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGAGACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGGAAGGCGATTCCTGGGGCTATCAg > 6:293600/1‑140 (MQ=255) aaGCTGCCTGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAg < 7:499496/140‑1 (MQ=255) tgcCAGCCGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGccc < 8:137080/139‑1 (MQ=255) cgcCAGACGGGGGCGCACTCCTCGTTACCAAACGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGccc < 2:595158/139‑1 (MQ=255) agcCAGACGGGGTCGCACTCCTGGTTACCAAAGGCGAGCGGGGGGCGTAGCGTGGTGATACTGACCTTATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGccc < 2:134848/140‑1 (MQ=255) gcCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGcccc < 4:1121175/140‑1 (MQ=255) aGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAg > 6:544016/1‑140 (MQ=255) ggTCGCACTCCTCTTTCCCAAACGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAgg < 7:597575/140‑1 (MQ=255) ggTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCTGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAgg > 8:693476/1‑140 (MQ=255) ggTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAgg > 4:436975/1‑140 (MQ=255) cACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTAtt > 6:784700/1‑140 (MQ=255) aCTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGAGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTAttt > 1:331797/1‑140 (MQ=255) ctcGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCACAGTTAAGGGTATTTTCgt > 3:81409/1‑139 (MQ=255) cGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCgatg < 2:522441/140‑1 (MQ=255) cGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCgatg > 3:157257/1‑140 (MQ=255) cGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCGTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATATTAAGGCCCCCAGTTAAGGGTATTTTCgatg > 8:821789/1‑140 (MQ=255) ttACCAATGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCgatgat < 2:944143/140‑1 (MQ=255) ttACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCgatgat < 7:1051253/140‑1 (MQ=255) ttACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCgatgat < 2:37693/140‑1 (MQ=255) ttACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCgatgat < 1:833240/140‑1 (MQ=255) cAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCa > 5:442791/1‑140 (MQ=255) cAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCGTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCa < 8:34658/140‑1 (MQ=255) aaaGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCAt < 7:378218/140‑1 (MQ=255) aaaCGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCAt < 5:926372/140‑1 (MQ=255) aaGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCAtt > 4:957225/1‑140 (MQ=255) aaGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCAtt > 2:817920/1‑140 (MQ=255) aaGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCAtt > 6:56283/1‑140 (MQ=255) | CTGGCATTTCCCACTGCCGCTAAGCGTTGTGGCGAATCAATAAACTGGCTGATGCGCTGAATGGTCAAAATATGTGCGTTGGCATCTGTGGCGCTGACGCAGAGAAGCAGCCAGACGGGGTCGCACTCCTCGTTACCAAAGGCGACCGGGGTGCGTAGCGTGGTGATACTGACCTGATTATAGTTTGCGCCTTGCTCTGGTCGGGCGTGAGGCAAGGCGATTCCTGGGGCTATCAGATAATAAGGCCCCCAGTTAAGGGTATTTTCGATGATCCCATT > NZ_CP022686/3386977‑3387254 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |