mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 119,184 | T→G | 10.4% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 349,096 | C→A | 10.5% | A603A (GCC→GCA) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 360,227 | T→G | 13.9% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,236 | C→A | 19.4% | D32Y (GAT→TAT) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,290 | T→G | 12.4% | T14P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 372,574 | A→C | 10.4% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 512,726 | C→A | 20.5% | intergenic (‑226/+4) | sdiA ← / ← yecC | transcriptional regulator SdiA/L‑cystine ABC transporter ATP‑binding protein YecC |
| RA | NZ_CP022686 | 531,408 | A→C | 13.0% | K44N (AAA→AAC) | fliF → | flagellar basal‑body MS‑ring/collar protein FliF |
| RA | NZ_CP022686 | 556,942 | G→T | 15.1% | intergenic (+126/‑722) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 596,637 | T→G | 12.2% | G54G (GGT→GGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,295 | T→G | 19.2% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 17.7% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,337 | T→G | 10.0% | V1621G (GTT→GGT) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 651,848 | A→C | 11.5% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 693,016 | C→A | 5.6% | P119Q (CCA→CAA) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 765,016 | C→A | 12.8% | V35F (GTT→TTT) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 766,757 | T→G | 14.9% | K290N (AAA→AAC) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,435 | C→A | 24.7% | intergenic (‑24/+203) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,441 | C→A | 22.4% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 18.6% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,472 | G→T | 13.7% | intergenic (‑61/+166) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 857,274 | T→G | 7.6% | G78G (GGT→GGG) | yehL → | MoxR family ATPase |
| RA | NZ_CP022686 | 881,733 | A→C | 17.6% | intergenic (+248/+139) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,080 | G→T | 23.1% | intergenic (+149/‑108) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 13.1% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 957,112 | T→G | 11.0% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,005,085 | C→A | 17.4% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,047,883 | T→G | 8.8% | intergenic (‑113/+51) | nuoM ← / ← nuoL | NADH‑quinone oxidoreductase subunit M/NADH‑quinone oxidoreductase subunit L |
| RA | NZ_CP022686 | 1,100,944 | T→G | 16.3% | D187A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,269,557 | C→A | 10.8% | T1122T (ACG→ACT) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,353,233 | A→C | 21.6% | V72G (GTT→GGT) | yfiF ← | tRNA/rRNA methyltransferase |
| RA | NZ_CP022686 | 1,360,709 | T→G | 11.3% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,724 | G→T | 12.4% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,727 | A→T | 10.2% | intergenic (‑62/+262) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,556 | T→G | 16.0% | P99P (CCA→CCC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,370,559 | T→G | 19.3% | K98N (AAA→AAC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,372,477 | C→A | 5.4% | T13T (ACC→ACA) | pheL → | pheA operon leader peptide PheL |
| RA | NZ_CP022686 | 1,479,607 | A→C | 10.1% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,479,619 | T→A | 9.6% | intergenic (‑28/+165) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,535,365 | A→C | 21.5% | K35N (AAA→AAC) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,546,988 | T→A | 9.1% | intergenic (+10/‑24) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,003 | G→C | 13.5% | intergenic (+25/‑9) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,395 | A→C | 13.9% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 12.0% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,632,501 | T→G | 8.1% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,633,846 | T→G | 35.2% | N253T (AAC→ACC) | yqeB ← | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | NZ_CP022686 | 1,640,925 | A→C | 18.8% | R7S (AGA→AGC) | ygfM → | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| RA | NZ_CP022686 | 1,674,231 | A→T | 8.1% | V186E (GTA→GAA) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 15.1% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 12.3% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,692,094 | G→T | 10.4% | I174I (ATC→ATA) | CIW80_RS08330 ← | nucleoside/nucleotide kinase family protein |
| RA | NZ_CP022686 | 1,706,025 | C→A | 17.5% | intergenic (‑635/‑20) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,716,145 | A→C | 12.8% | T42P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,716,202 | A→C | 10.4% | T61P (ACC→CCC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,758,771 | T→G | 6.6% | intergenic (+18/‑254) | sat → / → CIW80_RS08700 | serine protease autotransporter toxin Sat/transposase |
| RA | NZ_CP022686 | 1,785,695 | T→G | 8.4% | pseudogene (16/186 nt) | CIW80_RS08875 ← | zinc‑ribbon domain‑containing protein |
| RA | NZ_CP022686 | 1,833,799 | T→G | 13.6% | T450P (ACG→CCG) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,865,103 | A→C | 8.7% | L491V (TTG→GTG) | pitB ← | inorganic phosphate transporter PitB |
| RA | NZ_CP022686 | 1,911,602 | T→G | 11.0% | N224T (AAC→ACC) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 1,925,332 | A→C | 10.7% | N151T (AAC→ACC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,954,923 | T→G | 9.8% | T92P (ACG→CCG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | NZ_CP022686 | 2,016,170 | A→C | 6.5% | noncoding (104/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,049,089 | T→G | 17.5% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 11.2% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,097 | A→T | 12.9% | R253R (CGT→CGA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,168 | A→C | 7.3% | G614G (GGT→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 10.1% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,148,105 | C→G | 19.9% | L123V (CTG→GTG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,118 | C→G | 12.9% | A127G (GCG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,172,177 | A→C | 6.6% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,184,330 | G→T | 10.6% | F64L (TTC→TTA) | rplO ← | 50S ribosomal protein L15 |
| RA | NZ_CP022686 | 2,209,288 | G→T | 5.6% | T187N (ACC→AAC) | chiA ← | bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,272,797 | G→T | 11.0% | intergenic (+39/‑58) | greB → / → yhgF | transcription elongation factor GreB/Tex family protein |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,357,291 | A→C | 13.9% | N26T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,357,324 | A→C | 20.8% | N37T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,362,972 | T→G | 8.1% | F158V (TTT→GTT) | nikB → | nickel ABC transporter permease subunit NikB |
| RA | NZ_CP022686 | 2,380,922 | A→C | 13.7% | S182R (AGC→CGC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,380,936 | A→C | 10.3% | K186N (AAA→AAC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,394,287 | T→G | 16.9% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,410,581 | A→C | 10.8% | pseudogene (2817/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,470,422 | T→G | 12.1% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,558,864 | T→G | 5.5% | F128V (TTT→GTT) | yicG → | trimeric intracellular cation channel family protein |
| RA | NZ_CP022686 | 2,572,721 | A→C | 14.6% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 10.7% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,736,585 | T→A | 7.7% | Y183N (TAC→AAC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,736,586 | A→C | 15.1% | Y183S (TAC→TCC) ‡ | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,743,563 | T→G | 11.1% | noncoding (65/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,868,740 | T→G | 17.1% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 11.7% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,903,361 | T→G | 8.8% | N205T (AAC→ACC) | hslU ← | HslU‑‑HslV peptidase ATPase subunit |
| RA | NZ_CP022686 | 2,904,856 | T→G | 8.0% | K237N (AAA→AAC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,904,915 | T→G | 6.6% | T218P (ACC→CCC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,977,481 | T→G | 6.5% | V558G (GTA→GGA) | rpoB → | DNA‑directed RNA polymerase subunit beta |
| RA | NZ_CP022686 | 2,981,625 | A→C | 10.2% | D571A (GAC→GCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,983,975 | T→G | 5.9% | G1354G (GGT→GGG) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 3,136,940 | T→G | 12.3% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| RA | NZ_CP022686 | 3,184,639 | A→C | 8.8% | intergenic (‑86/+30) | cutA ← / ← dcuA | divalent cation tolerance protein CutA/anaerobic C4‑dicarboxylate transporter DcuA |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,200,595 | A→C | 7.2% | V199G (GTT→GGT) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
| RA | NZ_CP022686 | 3,281,062 | T→G | 10.9% | V94G (GTG→GGG) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,317,665 | A→T | 13.8% | intergenic (+83/+36) | lptG → / ← yjgR | LPS export ABC transporter permease LptG/DUF853 domain‑containing protein |
| RA | NZ_CP022686 | 3,334,291 | C→A | 6.5% | G250C (GGT→TGT) | fecD ← | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| RA | NZ_CP022686 | 3,348,334 | T→G | 6.7% | intergenic (‑150/‑50) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,390,614 | G→T | 8.5% | A143A (GCC→GCA) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,390,625 | C→A | 11.2% | D140Y (GAT→TAT) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,461,215 | A→T | 13.1% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,218 | G→C | 12.0% | intergenic (‑27/+8) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,225 | T→G | 7.7% | intergenic (‑34/+1) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 19.0% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,231 | C→G | 11.2% | noncoding (82/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,504,054 | T→G | 9.8% | V204G (GTT→GGT) | tal → | transaldolase |
| RA | NZ_CP022686 | 3,625,683 | T→G | 11.5% | A150A (GCT→GCG) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | NZ_CP022686 | 3,652,090 | T→G | 10.4% | intergenic (‑99/+13) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,655,540 | A→C | 8.9% | F765V (TTT→GTT) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,714,342 | T→G | 9.8% | L275V (TTG→GTG) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | NZ_CP022686 | 3,776,865 | C→A | 8.8% | L123M (CTG→ATG) | CIW80_RS18945 → | inovirus‑type Gp2 protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 10.1% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,895,534 | T→G | 8.8% | intergenic (‑140/+44) | CIW80_RS19510 ← / ← CIW80_RS19515 | protein YkgH/autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 3,925,289 | A→C | 10.4% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,925,304 | A→C | 14.2% | Q161P (CAG→CCG) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,368 | C→G | 6.3% | G284G (GGC→GGG) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,935,324 | T→G | 18.5% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,949,969 | T→G | 9.0% | D141A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,981,933 | T→G | 14.6% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,004,135 | T→G | 8.7% | R29R (CGT→CGG) | yajQ → | nucleotide binding protein YajQ |
| RA | NZ_CP022686 | 4,014,238 | C→G | 12.5% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,056,951 | C→A | 13.7% | H134N (CAC→AAC) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,074,902 | G→T | 13.2% | S23* (TCG→TAG) | CIW80_RS20380 ← | hypothetical protein |
| RA | NZ_CP022686 | 4,133,839 | T→G | 14.4% | K117T (AAA→ACA) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,133,850 | T→G | 12.1% | K113N (AAA→AAC) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,214,439 | G→C | 8.8% | intergenic (‑12/+23) | CIW80_RS21095 ← / ← CIW80_RS21100 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,214,457 | G→T | 10.8% | intergenic (‑30/+5) | CIW80_RS21095 ← / ← CIW80_RS21100 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,270,824 | A→C | 9.6% | K490T (AAG→ACG) | sucA → | 2‑oxoglutarate dehydrogenase E1 component |
| RA | NZ_CP022686 | 4,331,940 | A→C | 17.7% | F289V (TTT→GTT) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,335,504 | T→G | 8.5% | K58N (AAA→AAC) | ybhF ← | ATP‑binding cassette domain‑containing protein |
| RA | NZ_CP022686 | 4,440,324 | C→A | 15.3% | P794Q (CCG→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,334 | A→C | 17.5% | Q797H (CAA→CAC) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,560,980 | A→C | 6.5% | V663G (GTT→GGT) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | NZ_CP022686 | 4,571,417 | T→G | 11.3% | A66A (GCA→GCC) | pgaC ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | NZ_CP022686 | 4,587,091 | T→G | 9.7% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,605,593 | T→G | 9.8% | Q51P (CAG→CCG) | CIW80_RS23010 ← | hypothetical protein |
| RA | NZ_CP022686 | 4,632,182 | T→G | 10.1% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,642,951 | A→C | 12.3% | N732T (AAC→ACC) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,759,393 | A→C | 5.7% | V213G (GTA→GGA) | ldtC ← | L,D‑transpeptidase LdtC |
| RA | NZ_CP022686 | 4,762,516 | T→G | 9.6% | K368N (AAA→AAC) | mfd ← | transcription‑repair coupling factor |
| RA | NZ_CP022686 | 4,787,799 | C→A | 8.4% | intergenic (‑52/‑44) | CIW80_RS24075 ← / → CIW80_RS24080 | IS3‑like element ISEc52 family transposase/super‑infection exclusion protein B |
| RA | NZ_CP022686 | 4,804,059 | A→C | 9.8% | E620A (GAG→GCG) | CIW80_RS24225 → | phage terminase large subunit family protein |
| RA | NZ_CP022686 | 4,809,441 | T→G | 11.5% | G50G (GGT→GGG) | CIW80_RS24260 → | head‑tail joining protein |
| RA | NZ_CP022686 | 4,814,967 | C→G | 6.9% | A63G (GCT→GGT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,814,981 | T→G | 10.2% | W68G (TGG→GGG) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,815,015 | A→T | 6.5% | Y79F (TAC→TTC) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,839,687 | T→G | 12.9% | N144T (AAC→ACC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,839,709 | C→G | 8.2% | D137H (GAC→CAC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,918,846 | C→A | 10.3% | Q387H (CAG→CAT) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,919,017 | T→G | 6.5% | E330D (GAA→GAC) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,951,512 | G→T | 16.1% | D36Y (GAT→TAT) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 4,951,521 | A→C | 10.8% | T39P (ACC→CCC) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 5,043,558 | T→A | 9.4% | S1063R (AGT→AGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMUT1‑hok‑empty | 4,123:1 | +T | 94.0% | intergenic (‑341/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,127 | C→A | 100% | intergenic (‑345/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| RA | pMUT1‑hok‑empty | 4,132 | 4 bp→TA | 100% | intergenic (‑350/–) | putative rom (RNA I inhibition modulator protein) ← / – | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 189–316 | 3085–2957 | 2642–2897 | 9505 [8752] | [9328] 9480 | JNG15_RS00005–mobA | JNG15_RS00005,JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMUT1‑hok‑empty | 1265–1318 | 3983–1722 | 405–2719 | 3873 [3824] | [3833] 3913 | putative HTH domain protein–putative rom (RNA I inhibition modulator protein) | putative HTH domain protein,uncharacterized protein,hypothetical protein,putative rom (RNA I inhibition modulator protein) |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 3743172 = | 248 (1.370) | 14 (0.080) | 11/248 | NT | 5.3% | intergenic (+1/+253) | CIW80_RS18695/CIW80_RS18700 | IS66 family transposase/IS110‑like element ISEc45 family transposase |
| ? | NZ_CP022686 | = 3744618 | 251 (1.400) | intergenic (‑60/‑4) | CIW80_RS18700/CIW80_RS18705 | IS110‑like element ISEc45 family transposase/transposase | |||||
| * | ? | pMUT1‑hok‑empty | 456 = | 3225 (0.480) | 4317 (0.650) | 215/250 | NT | 66.1% | intergenic (–/+1261) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | 4136 = | 1207 (0.180) | intergenic (‑354/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||
| * | ? | pMUT1‑hok‑empty | = 491 | 4653 (0.700) | 3425 (0.640) | 169/200 | NT | 58.2% | intergenic (–/+1226) | –/putative HTH domain protein | –/– |
| ? | pMUT1‑hok‑empty | = 4098 | 1206 (0.230) | intergenic (‑316/–) | putative rom (RNA I inhibition modulator protein)/– | –/– | |||||