mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 46,589 | T→G | 8.2% | R410R (CGT→CGG) | vgrG → | type VI secretion system tip protein TssI/VgrG |
| RA | NZ_CP022686 | 119,184 | T→G | 9.9% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 192,380 | T→A | 9.3% | R597R (CGT→CGA) | rsxC → | electron transport complex subunit RsxC |
| RA | NZ_CP022686 | 228,009 | T→G | 8.4% | L531R (CTT→CGT) | ydhS → | FAD‑NAD(P)‑binding protein |
| RA | NZ_CP022686 | 249,241 | A→C | 7.6% | T352P (ACG→CCG) | ydiK → | AI‑2E family transporter YdiK |
| RA | NZ_CP022686 | 263,831 | A→C | 10.5% | intergenic (+38/+19) | fadK → / ← ppsA | medium‑chain fatty‑acid‑‑CoA ligase/phosphoenolpyruvate synthase |
| RA | NZ_CP022686 | 349,106 | A→C | 10.8% | T607P (ACC→CCC) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 360,227 | T→G | 15.3% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 372,574 | A→C | 16.1% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 487,568 | T→G | 7.3% | K523N (AAA→AAC) | tar ← | methyl‑accepting chemotaxis protein II |
| RA | NZ_CP022686 | 496,086 | A→C | 9.9% | L399V (TTA→GTA) | otsA ← | alpha,alpha‑trehalose‑phosphate synthase |
| RA | NZ_CP022686 | 498,662 | A→C | 13.3% | C183G (TGT→GGT) | araH ← | arabinose ABC transporter permease AraH |
| RA | NZ_CP022686 | 512,735 | G→T | 20.8% | Q250K (CAA→AAA) | yecC ← | L‑cystine ABC transporter ATP‑binding protein YecC |
| RA | NZ_CP022686 | 531,408 | A→C | 14.2% | K44N (AAA→AAC) | fliF → | flagellar basal‑body MS‑ring/collar protein FliF |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 601,295 | T→G | 22.7% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 24.3% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 651,845 | C→A | 5.4% | L239F (TTG→TTT) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 651,848 | A→C | 13.1% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 667,110 | T→G | 5.9% | K3080T (AAG→ACG) | clbB ← | colibactin hybrid non‑ribosomal peptide synthetase/type I polyketide synthase ClbB |
| RA | NZ_CP022686 | 684,606 | T→G | 7.7% | intergenic (‑967/‑213) | CIW80_RS26355 ← / → CIW80_RS03520 | IS4 family transposase/TonB‑dependent receptor |
| RA | NZ_CP022686 | 694,388 | C→A | 9.4% | intergenic (+148/‑48) | CIW80_RS03555 → / → CIW80_RS03560 | transposase/PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 694,438 | G→T | 13.5% | M1M (ATG→ATT) † | CIW80_RS03560 → | PfkB family carbohydrate kinase |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 764,997 | T→G | 9.8% | N41T (AAC→ACC) | wcaM ← | colanic acid biosynthesis protein WcaM |
| RA | NZ_CP022686 | 768,242 | T→G | 6.1% | intergenic (‑616/+46) | wcaK ← / ← wzxC | colanic acid biosynthesis pyruvyl transferase WcaK/colanic acid undecaprenyl disphosphate flippase WzxC |
| RA | NZ_CP022686 | 777,337 | A→C | 6.9% | R225R (CGT→CGG) | gmd ← | GDP‑mannose 4,6‑dehydratase |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,452 | G→T | 20.9% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 20.3% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 864,166 | A→C | 13.1% | intergenic (+32/+9) | yehR → / ← yehS | YehR family lipoprotein/DUF1456 family protein |
| RA | NZ_CP022686 | 864,173 | T→G | 17.5% | intergenic (+39/+2) | yehR → / ← yehS | YehR family lipoprotein/DUF1456 family protein |
| RA | NZ_CP022686 | 878,883 | T→G | 9.1% | intergenic (+75/+45) | yohD → / ← yohF | DedA family protein/SDR family oxidoreductase |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 954,712 | T→G | 6.5% | Y134S (TAC→TCC) | ccmE ← | cytochrome c maturation protein CcmE |
| RA | NZ_CP022686 | 996,762 | T→G | 7.7% | D579A (GAC→GCC) | gyrA ← | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| RA | NZ_CP022686 | 998,355 | A→C | 5.6% | V48G (GTA→GGA) | gyrA ← | DNA topoisomerase (ATP‑hydrolyzing) subunit A |
| RA | NZ_CP022686 | 1,005,085 | C→A | 11.9% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,034,493 | T→G | 9.0% | T26P (ACC→CCC) | menC ← | o‑succinylbenzoate synthase |
| RA | NZ_CP022686 | 1,064,076 | A→C | 7.9% | T161P (ACG→CCG) | yfbR → | 5'‑deoxynucleotidase |
| RA | NZ_CP022686 | 1,100,944 | T→G | 16.7% | D187A (GAC→GCC) | aroC ← | chorismate synthase |
| RA | NZ_CP022686 | 1,197,146 | C→G | 7.4% | L76V (CTG→GTG) | murQ → | N‑acetylmuramic acid 6‑phosphate etherase |
| RA | NZ_CP022686 | 1,209,908 | T→G | 14.3% | D396A (GAC→GCC) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,213,483 | T→G | 13.6% | N419T (AAC→ACC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,239,837 | T→G | 13.3% | intergenic (‑134/+34) | ypfJ ← / ← purC | neutral zinc metallopeptidase/phosphoribosylaminoimidazolesuccinocarboxamide synthase |
| RA | NZ_CP022686 | 1,269,551 | T→G | 7.9% | K1124N (AAA→AAC) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,278,783 | T→G | 8.0% | D242A (GAC→GCC) | bamB ← | outer membrane protein assembly factor BamB |
| RA | NZ_CP022686 | 1,319,588 | T→G | 15.7% | E332D (GAA→GAC) | glyA ← | serine hydroxymethyltransferase |
| RA | NZ_CP022686 | 1,360,724 | G→T | 8.6% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,441,772 | A→C | 6.6% | R596R (CGT→CGG) | hypF ← | carbamoyltransferase HypF |
| RA | NZ_CP022686 | 1,479,607 | A→C | 9.1% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,504,323 | C→A | 10.6% | P254T (CCT→ACT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,361 | G→T | 21.6% | V266V (GTG→GTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,547,000 | G→C | 11.7% | intergenic (+22/‑12) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,395 | A→C | 13.5% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 10.4% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,597,246 | C→G | 7.5% | G15A (GGC→GCC) | thyA ← | thymidylate synthase |
| RA | NZ_CP022686 | 1,633,846 | T→G | 31.2% | N253T (AAC→ACC) | yqeB ← | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | NZ_CP022686 | 1,674,224 | T→G | 12.3% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 14.4% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 10.2% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,716,167 | A→C | 13.3% | N49T (AAC→ACC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,832,023 | T→G | 9.0% | N355T (AAC→ACC) | gspE ← | type II secretion system ATPase GspE |
| RA | NZ_CP022686 | 1,925,365 | A→C | 8.3% | D162A (GAC→GCC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,954,923 | T→G | 22.1% | T92P (ACG→CCG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | NZ_CP022686 | 2,016,175 | T→G | 9.3% | noncoding (99/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,047,692 | A→C | 5.5% | F41V (TTC→GTC) | mtr ← | tryptophan permease |
| RA | NZ_CP022686 | 2,048,050 | A→C | 5.6% | R602R (CGT→CGG) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,089 | T→G | 18.6% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,193 | A→C | 8.0% | V606G (GTT→GGT) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,076,554 | T→G | 9.9% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,110,457 | T→G | 15.4% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,123,241 | A→C | 9.2% | F208V (TTT→GTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,130,829 | A→C | 6.7% | V237G (GTT→GGT) | mreC ← | rod shape‑determining protein MreC |
| RA | NZ_CP022686 | 2,159,660 | G→T | 13.4% | D163Y (GAT→TAT) | CIW80_RS10780 → | amino acid ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,159,687 | T→A | 11.1% | Y172N (TAC→AAC) | CIW80_RS10780 → | amino acid ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,172,177 | A→C | 5.5% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,172,741 | A→C | 6.4% | L265V (TTA→GTA) | dprA ← | DNA‑protecting protein DprA |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,356,231 | T→G | 8.6% | D9A (GAC→GCC) | tusA ← | sulfurtransferase TusA |
| RA | NZ_CP022686 | 2,357,291 | A→C | 10.1% | N26T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,380,922 | A→C | 12.7% | S182R (AGC→CGC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,386,496 | T→G | 6.8% | K417N (AAA→AAC) | prlC ← | oligopeptidase A |
| RA | NZ_CP022686 | 2,397,370 | T→G | 9.9% | F9C (TTT→TGT) | chuT → | heme ABC transporter substrate‑binding protein ChuT |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,516,216 | T→C | 6.7% | S542S (TCT→TCC) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,516,577 | A→G | 7.8% | T663A (ACA→GCA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,521,024 | T→G | 8.9% | V229G (GTT→GGT) | lldP → | L‑lactate permease |
| RA | NZ_CP022686 | 2,558,864 | T→G | 8.0% | F128V (TTT→GTT) | yicG → | trimeric intracellular cation channel family protein |
| RA | NZ_CP022686 | 2,572,705 | A→C | 10.6% | G191G (GGT→GGG) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 13.7% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,617,885 | T→G | 10.4% | K190N (AAA→AAC) | ilvB ← | acetolactate synthase large subunit |
| RA | NZ_CP022686 | 2,717,407 | T→G | 8.4% | V103G (GTG→GGG) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,780,149 | T→G | 6.0% | V690G (GTC→GGC) | metE → | 5‑methyltetrahydropteroyltriglutamate‑‑ homocysteine S‑methyltransferase |
| RA | NZ_CP022686 | 2,801,864 | T→G | 8.3% | L16F (TTA→TTC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,808,135 | C→A | 9.3% | P444T (CCT→ACT) | ubiB → | ubiquinone biosynthesis regulatory protein kinase UbiB |
| RA | NZ_CP022686 | 2,834,886 | A→C | 9.5% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,837,432 | C→A | 7.4% | intergenic (+73/‑46) | CIW80_RS26475 → / → yihI | hypothetical protein/Der GTPase‑activating protein YihI |
| RA | NZ_CP022686 | 2,868,740 | T→G | 19.8% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 9.1% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,904,856 | T→G | 8.8% | K237N (AAA→AAC) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,908,932 | A→C | 5.8% | F36V (TTT→GTT) | priA ← | primosomal protein N' |
| RA | NZ_CP022686 | 2,920,408 | C→A | 8.1% | Q62K (CAA→AAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,920,418 | C→A | 6.6% | A65E (GCA→GAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,920,428 | A→C | 7.9% | K68N (AAA→AAC) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,989,627 | T→G | 8.6% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,080,461 | T→G | 8.9% | R158R (CGT→CGG) | CIW80_RS15320 → | Ldh family oxidoreductase |
| RA | NZ_CP022686 | 3,090,099 | G→C | 7.6% | L10V (CTT→GTT) | yjcB ← | YjcB family protein |
| RA | NZ_CP022686 | 3,090,101 | A→C | 7.5% | V9G (GTT→GGT) | yjcB ← | YjcB family protein |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,265,089 | C→A | 18.0% | E75D (GAG→GAT) | ytfJ ← | YtfJ family protein |
| RA | NZ_CP022686 | 3,327,608 | C→A | 7.2% | intergenic (+166/‑872) | CIW80_RS16560 → / → CIW80_RS16565 | helix‑turn‑helix transcriptional regulator/hypothetical protein |
| RA | NZ_CP022686 | 3,348,342 | A→T | 6.9% | intergenic (‑158/‑42) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,390,605 | T→G | 20.0% | K146N (AAA→AAC) | sgcX ← | M42 family metallopeptidase |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,451,845 | A→C | 10.7% | E278D (GAA→GAC) | lgoD → | L‑galactonate oxidoreductase |
| RA | NZ_CP022686 | 3,461,229 | T→G | 18.5% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,528,197 | A→C | 8.1% | N50T (AAC→ACC) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | NZ_CP022686 | 3,528,214 | A→C | 7.1% | T56P (ACC→CCC) | carB → | carbamoyl‑phosphate synthase large subunit |
| RA | NZ_CP022686 | 3,528,218 | A→C | 9.8% | D57A (GAC→GCC) | carB → | carbamoyl‑phosphate synthase large subunit |
| MC JC | NZ_CP022686 | 3,559,837 | Δ2,343 bp | 100% | coding (10‑2352/2352 nt) | polB ← | DNA polymerase II |
| RA | NZ_CP022686 | 3,570,252 | T→G | 9.6% | L223V (TTG→GTG) | yabI → | DedA family protein |
| RA | NZ_CP022686 | 3,570,286 | T→G | 5.8% | V234G (GTG→GGG) | yabI → | DedA family protein |
| RA | NZ_CP022686 | 3,625,683 | T→G | 13.9% | A150A (GCT→GCG) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | NZ_CP022686 | 3,652,079 | T→G | 6.3% | intergenic (‑88/+24) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,688,214 | T→G | 6.4% | N631T (AAC→ACC) | glnD ← | bifunctional uridylyltransferase/uridylyl‑removing protein GlnD |
| RA | NZ_CP022686 | 3,703,648 | A→C | 8.8% | T120P (ACG→CCG) | fabZ → | 3‑hydroxyacyl‑ACP dehydratase FabZ |
| RA | NZ_CP022686 | 3,734,367 | T→G | 24.8% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,370 | G→T | 9.0% | G226C (GGC→TGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,380 | T→G | 14.0% | L229R (CTC→CGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,770,509 | A→T | 8.4% | intergenic (‑245/+218) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,520 | G→T | 6.5% | intergenic (‑256/+207) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,524 | T→G | 6.4% | intergenic (‑260/+203) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 15.3% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,797,493 | G→T | 13.4% | G134C (GGT→TGT) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,798,080 | T→G | 5.4% | R329R (CGT→CGG) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,800,979 | A→C | 8.6% | pseudogene (1255/1773 nt) | CIW80_RS19080 → | ShlB/FhaC/HecB family hemolysin secretion/activation protein |
| MC JC | NZ_CP022686 | 3,844,426 | Δ1,036 bp | 100% | coding (2‑1037/1056 nt) | dinB → | DNA polymerase IV |
| RA | NZ_CP022686 | 3,868,846 | T→G | 10.5% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,909,314 | G→T | 6.2% | V306F (GTC→TTC) | pdeL → | DNA‑binding transcriptional activator/c‑di‑GMP phosphodiesterase PdeL |
| RA | NZ_CP022686 | 3,935,324 | T→G | 11.4% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 8.8% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,977,656 | A→C | 10.3% | K88N (AAA→AAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,979,408 | T→G | 8.2% | V105G (GTT→GGT) | brnQ → | branched‑chain amino acid transporter carrier protein BrnQ |
| RA | NZ_CP022686 | 3,981,933 | T→G | 14.7% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,014,238 | C→G | 12.5% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,056,951 | C→A | 17.7% | H134N (CAC→AAC) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,133,839 | T→G | 15.5% | K117T (AAA→ACA) | ybdF ← | MmcQ/YjbR family DNA‑binding protein |
| RA | NZ_CP022686 | 4,188,944 | A→C | 12.1% | V321G (GTA→GGA) | rlpA ← | endolytic peptidoglycan transglycosylase RlpA |
| RA | NZ_CP022686 | 4,214,103 | T→A | 9.4% | intergenic (‑3/+35) | CIW80_RS21080 ← / ← CIW80_RS21085 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,280,095 | T→G | 9.2% | G103G (GGT→GGG) | cydB → | cytochrome d ubiquinol oxidase subunit II |
| RA | NZ_CP022686 | 4,287,456 | T→G | 9.1% | noncoding (47/76 nt) | CIW80_RS21475 → | tRNA‑Val |
| RA | NZ_CP022686 | 4,287,463 | T→A | 10.2% | noncoding (54/76 nt) | CIW80_RS21475 → | tRNA‑Val |
| RA | NZ_CP022686 | 4,331,940 | A→C | 24.5% | F289V (TTT→GTT) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,419,926 | C→G | 100% | intergenic (‑347/+147) | lysO ← / ← aqpZ | L‑lysine exporter LysO/aquaporin Z |
| RA | NZ_CP022686 | 4,440,314 | T→G | 10.3% | Y791D (TAT→GAT) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,324 | C→A | 14.8% | P794Q (CCG→CAG) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,485,614 | T→G | 15.5% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,535,313 | G→T | 7.2% | A106A (GCG→GCT) | appA → | bifunctional acid phosphatase/4‑phytase |
| RA | NZ_CP022686 | 4,562,600 | T→G | 11.5% | Q123P (CAG→CCG) | putA ← | trifunctional transcriptional regulator/proline dehydrogenase/L‑glutamate gamma‑semialdehyde dehydrogenase |
| RA | NZ_CP022686 | 4,571,417 | T→G | 9.7% | A66A (GCA→GCC) | pgaC ← | poly‑beta‑1,6‑N‑acetyl‑D‑glucosamine synthase |
| RA | NZ_CP022686 | 4,587,091 | T→G | 13.1% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,632,182 | T→G | 8.4% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,632,186 | G→T | 7.1% | G278C (GGC→TGC) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,655,834 | A→C | 5.7% | R390R (CGT→CGG) | iroC ← | salmochelin/enterobactin export ABC transporter IroC |
| RA | NZ_CP022686 | 4,712,763 | A→C | 19.0% | A52A (GCT→GCG) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,764,877 | T→G | 15.6% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,886 | G→T | 8.7% | intergenic (‑66/‑195) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,904 | G→T | 11.1% | intergenic (‑84/‑177) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 22.7% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,787,799 | C→A | 6.8% | intergenic (‑52/‑44) | CIW80_RS24075 ← / → CIW80_RS24080 | IS3‑like element ISEc52 family transposase/super‑infection exclusion protein B |
| RA | NZ_CP022686 | 4,787,836 | A→C | 7.7% | intergenic (‑89/‑7) | CIW80_RS24075 ← / → CIW80_RS24080 | IS3‑like element ISEc52 family transposase/super‑infection exclusion protein B |
| RA | NZ_CP022686 | 4,814,990 | T→G | 11.6% | F71V (TTT→GTT) | CIW80_RS24295 → | phage tail protein |
| RA | NZ_CP022686 | 4,815,007 | T→G | 8.9% | P76P (CCT→CCG) | CIW80_RS24295 → | phage tail protein |
| MC JC | NZ_CP022686 | 4,844,868 | Δ1,662 bp | 100% | [umuD]–[umuC] | [umuD], [umuC] | |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,905,170 | T→G | 10.6% | V99G (GTT→GGT) | CIW80_RS24815 → | coenzyme F390 synthetase |
| RA | NZ_CP022686 | 4,919,017 | T→G | 7.7% | E330D (GAA→GAC) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 4,997,085 | A→C | 7.6% | N158T (AAC→ACC) | ycjT → | kojibiose phosphorylase |
| RA | NZ_CP022686 | 4,997,088 | A→C | 8.6% | H159P (CAC→CCC) | ycjT → | kojibiose phosphorylase |
| RA | NZ_CP022686 | 5,023,952 | G→T | 5.8% | intergenic (+218/‑260) | zntB → / → dbpA | zinc transporter ZntB/ATP‑dependent RNA helicase DbpA |
| RA | NZ_CP022686 | 5,029,533 | A→C | 5.9% | intergenic (‑124/+17) | uspF ← / ← ompN | universal stress protein UspF/porin OmpN |
| RA | NZ_CP022686 | 5,042,250 | A→T | 7.0% | V627V (GTA→GTT) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,042,289 | T→C | 10.3% | N640N (AAT→AAC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,042,304 | T→C | 9.1% | N645N (AAT→AAC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pHH‑29_RBS | 2,896 | T→G | 11.0% | intergenic (‑475/+233) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,898 | Δ1 bp | 5.3% | intergenic (‑477/+231) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,899 | Δ1 bp | 92.3% | intergenic (‑478/+230) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,914 | T→G | 7.6% | intergenic (‑493/+215) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,945 | G→T | 7.8% | intergenic (‑524/+184) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,946 | G→T | 12.8% | intergenic (‑525/+183) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,954 | G→T | 8.4% | intergenic (‑533/+175) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,964 | G→T | 10.5% | intergenic (‑543/+165) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 336–2618 | 3074–2957 | 340–2739 | 10886 [10852] | [10842] 11021 | [JNG15_RS00005]–mobA | [JNG15_RS00005],JNG15_RS00010,JNG15_RS00015,mobA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 262466 = | 3 (0.010) | 227 (1.110) | 91/248 | NT | 98.7% | coding (320/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1524130 | NA (NA) | intergenic (+8/+232) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein | |||||
| * | ? | NZ_CP022686 | = 262468 | 3 (0.010) | 179 (0.880) | 71/248 | NT | 98.4% | coding (322/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1761697 | NA (NA) | intergenic (‑72/‑70) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase | |||||