mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 119,184 | T→G | 15.4% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 166,881 | G→T | 10.0% | E53* (GAA→TAA) | rstB → | two‑component system sensor histidine kinase RstB |
| RA | NZ_CP022686 | 197,828 | C→A | 9.9% | F461L (TTC→TTA) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | NZ_CP022686 | 235,011 | A→G | 21.9% | T9A (ACC→GCC) | pykF → | pyruvate kinase PykF |
| RA | NZ_CP022686 | 340,516 | A→C | 10.6% | F31V (TTT→GTT) | ydjK ← | MFS transporter |
| RA | NZ_CP022686 | 349,090 | T→A | 9.3% | F601L (TTT→TTA) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 350,056 | A→C | 14.1% | K241T (AAA→ACA) | yeaH → | YeaH/YhbH family protein |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 496,086 | A→C | 13.3% | L399V (TTA→GTA) | otsA ← | alpha,alpha‑trehalose‑phosphate synthase |
| RA | NZ_CP022686 | 556,940 | A→T | 13.2% | intergenic (+124/‑724) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 582,870 | C→A | 10.6% | W401C (TGG→TGT) | ybtS ← | yersiniabactin biosynthesis salicylate synthase Irp9/YbtS |
| RA | NZ_CP022686 | 585,422 | A→C | 14.6% | V585G (GTG→GGG) | ybtQ ← | yersiniabactin ABC transporter ATP‑binding/permease protein YbtQ |
| RA | NZ_CP022686 | 596,637 | T→G | 6.8% | G54G (GGT→GGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 636,764 | G→C | 9.1% | V435V (GTC→GTG) | clbM ← | precolibactin export MATE transporter ClbM |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,452 | G→T | 15.5% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 837,561 | G→T | 16.7% | intergenic (‑134/+89) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 837,634 | C→A | 6.9% | intergenic (‑207/+16) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 881,733 | A→C | 15.6% | intergenic (+248/+139) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,046 | G→T | 13.8% | intergenic (+115/‑142) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,051 | G→T | 11.3% | intergenic (+120/‑137) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,080 | G→T | 16.5% | intergenic (+149/‑108) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 948,090 | C→A | 18.8% | intergenic (+159/‑98) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 954,525 | A→C | 7.0% | S38A (TCT→GCT) | ccmF ← | cytochrome c‑type biogenesis heme lyase CcmF |
| RA | NZ_CP022686 | 957,112 | T→G | 18.1% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,000,431 | T→G | 21.5% | D945A (GAC→GCC) | yfaL ← | AIDA‑I family autotransporter adhesin YfaL/EhaC |
| RA | NZ_CP022686 | 1,005,085 | C→A | 16.2% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,065,978 | A→C | 13.6% | F37V (TTT→GTT) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,065,997 | A→C | 12.2% | A30A (GCT→GCG) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,172,467 | C→A | 11.9% | A130E (GCA→GAA) | yfeD → | putative DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 1,174,279 | A→T | 10.1% | intergenic (+8/‑36) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,209,908 | T→G | 20.4% | D396A (GAC→GCC) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,209,917 | G→T | 13.2% | P393Q (CCA→CAA) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,213,462 | A→C | 29.3% | L426R (CTG→CGG) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,213,479 | T→G | 12.7% | G420G (GGA→GGC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,213,483 | T→G | 19.5% | N419T (AAC→ACC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,237,918 | C→A | 12.5% | C303F (TGC→TTC) | tmcA ← | tRNA cytosine(34) acetyltransferase TmcA |
| RA | NZ_CP022686 | 1,249,393 | C→A | 6.1% | intergenic (‑40/+46) | uraA ← / ← upp | uracil permease/uracil phosphoribosyltransferase |
| RA | NZ_CP022686 | 1,269,551 | T→G | 10.8% | K1124N (AAA→AAC) | CIW80_RS06320 ← | DUF823 domain‑containing adhesin |
| RA | NZ_CP022686 | 1,319,599 | T→G | 9.0% | T329P (ACC→CCC) | glyA ← | serine hydroxymethyltransferase |
| RA | NZ_CP022686 | 1,360,724 | G→T | 8.9% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,559 | T→G | 14.3% | K98N (AAA→AAC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,441,726 | A→C | 7.3% | L612V (TTA→GTA) | hypF ← | carbamoyltransferase HypF |
| RA | NZ_CP022686 | 1,447,152 | G→T | 10.1% | R51S (CGC→AGC) | hycI ← | hydrogenase maturation peptidase HycI |
| RA | NZ_CP022686 | 1,479,607 | A→C | 10.3% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,504,355 | T→A | 12.8% | A264A (GCT→GCA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,361 | G→T | 20.0% | V266V (GTG→GTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,535,365 | A→C | 31.7% | K35N (AAA→AAC) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,547,110 | G→C | 18.6% | intergenic (+22/‑12) | CIW80_RS07710 → / → CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,395 | A→C | 10.9% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 13.5% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,604,828 | A→C | 8.7% | L390R (CTG→CGG) | lplT ← | lysophospholipid transporter LplT |
| RA | NZ_CP022686 | 1,615,220 | A→C | 7.3% | R58R (CGT→CGG) | kduD ← | 2‑dehydro‑3‑deoxy‑D‑gluconate 5‑dehydrogenase KduD |
| RA | NZ_CP022686 | 1,632,501 | T→G | 9.4% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,674,224 | T→G | 11.6% | K188N (AAA→AAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 12.1% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 11.0% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,705,974 | T→G | 9.9% | intergenic (‑584/‑71) | yqgB ← / → metK | acid stress response protein YqgB/methionine adenosyltransferase |
| RA | NZ_CP022686 | 1,716,167 | A→C | 10.7% | N49T (AAC→ACC) | rdgB → | XTP/dITP diphosphatase |
| RA | NZ_CP022686 | 1,832,023 | T→G | 14.6% | N355T (AAC→ACC) | gspE ← | type II secretion system ATPase GspE |
| RA | NZ_CP022686 | 1,860,122 | C→G | 8.1% | V101V (GTG→GTC) | CIW80_RS09255 ← | YtfJ family protein |
| RA | NZ_CP022686 | 1,892,153 | A→C | 9.3% | intergenic (+16/‑307) | CIW80_RS09425 → / → CIW80_RS09430 | FCD domain‑containing protein/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 1,954,923 | T→G | 19.9% | T92P (ACG→CCG) | ttdR ← | DNA‑binding transcriptional activator TtdR |
| RA | NZ_CP022686 | 2,049,089 | T→G | 20.6% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,094 | G→T | 14.4% | T254T (ACC→ACA) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,112 | C→A | 10.0% | A248A (GCG→GCT) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,168 | A→C | 9.8% | G614G (GGT→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,130,829 | A→C | 16.7% | V237G (GTT→GGT) | mreC ← | rod shape‑determining protein MreC |
| RA | NZ_CP022686 | 2,148,105 | C→G | 10.3% | L123V (CTG→GTG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,114 | C→G | 13.3% | L126V (CTG→GTG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,159,673 | C→A | 12.3% | A167E (GCA→GAA) | CIW80_RS10780 → | amino acid ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,172,177 | A→C | 7.9% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,179,878 | T→G | 7.9% | K35T (AAG→ACG) | rplQ ← | 50S ribosomal protein L17 |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,215,205 | G→C | 5.6% | A41G (GCT→GGT) | tusC ← | sulfurtransferase complex subunit TusC |
| RA | NZ_CP022686 | 2,272,797 | G→T | 8.6% | intergenic (+39/‑58) | greB → / → yhgF | transcription elongation factor GreB/Tex family protein |
| RA | NZ_CP022686 | 2,310,429 | T→G | 8.6% | N248T (AAC→ACC) | glgP ← | glycogen phosphorylase |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,357,324 | A→C | 19.3% | N37T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,361,489 | T→G | 13.7% | V188G (GTT→GGT) | nikA → | nickel ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,362,949 | T→G | 6.3% | L150R (CTG→CGG) | nikB → | nickel ABC transporter permease subunit NikB |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,470,422 | T→G | 8.0% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,516,918 | T→A | 5.9% | S776S (TCT→TCA) | upaG → | trimeric autotransporter adhesin UpaG |
| RA | NZ_CP022686 | 2,572,721 | A→C | 14.8% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,624,291 | G→T | 10.2% | S140Y (TCC→TAC) | yidK ← | solute:sodium symporter family transporter |
| RA | NZ_CP022686 | 2,717,385 | T→G | 9.0% | F96V (TTT→GTT) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,754,975 | C→A | 7.9% | E5* (GAA→TAA) | cyaY ← | iron donor protein CyaY |
| RA | NZ_CP022686 | 2,758,109 | A→C | 8.8% | N34T (AAC→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,801,884 | T→G | 5.0% | T10P (ACC→CCC) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,868,740 | T→G | 23.1% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 13.5% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,871,422 | T→G | 9.3% | N149T (AAC→ACC) | fdnG ← | formate dehydrogenase‑N subunit alpha |
| RA | NZ_CP022686 | 2,920,417 | G→C | 12.1% | A65P (GCA→CCA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,989,627 | T→G | 12.3% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 2,994,693 | T→G | 8.6% | W162G (TGG→GGG) | yjaH → | DUF1481 domain‑containing protein |
| RA | NZ_CP022686 | 3,020,229 | T→G | 12.7% | V133G (GTC→GGC) | yjbB → | Na/Pi cotransporter family protein |
| RA | NZ_CP022686 | 3,090,101 | A→C | 9.8% | V9G (GTT→GGT) | yjcB ← | YjcB family protein |
| RA | NZ_CP022686 | 3,136,940 | T→G | 8.9% | D161A (GAC→GCC) | phnN ← | ribose 1,5‑bisphosphokinase |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,265,084 | T→G | 14.5% | N77T (AAC→ACC) | ytfJ ← | YtfJ family protein |
| RA | NZ_CP022686 | 3,281,059 | T→G | 10.8% | L93R (CTG→CGG) | yjfF → | sugar ABC transporter permease YjfF |
| RA | NZ_CP022686 | 3,317,673 | A→T | 10.4% | intergenic (+91/+28) | lptG → / ← yjgR | LPS export ABC transporter permease LptG/DUF853 domain‑containing protein |
| RA | NZ_CP022686 | 3,334,291 | C→A | 9.5% | G250C (GGT→TGT) | fecD ← | Fe(3+) dicitrate ABC transporter permease subunit FecD |
| RA | NZ_CP022686 | 3,387,644 | A→C | 10.1% | L222R (CTG→CGG) | sgcQ ← | BtpA family protein SgcQ |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 12.6% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,451,832 | T→A | 10.6% | F274Y (TTC→TAC) | lgoD → | L‑galactonate oxidoreductase |
| RA | NZ_CP022686 | 3,459,370 | C→A | 14.3% | S62Y (TCT→TAT) | bglJ → | DNA‑binding transcriptional activator BglJ |
| RA | NZ_CP022686 | 3,461,224 | T→G | 12.9% | intergenic (‑33/+2) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 18.8% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,504,054 | T→G | 9.0% | V204G (GTT→GGT) | tal → | transaldolase |
| RA | NZ_CP022686 | 3,514,511 | A→C | 5.1% | S190R (AGC→CGC) | CIW80_RS17610 → | hypothetical protein |
| RA | NZ_CP022686 | 3,538,827 | A→C | 6.5% | L123V (TTA→GTA) | caiT ← | L‑carnitine/gamma‑butyrobetaine antiporter |
| MC JC | NZ_CP022686 | 3,559,837 | Δ2,343 bp | 100% | coding (10‑2352/2352 nt) | polB ← | DNA polymerase II |
| RA | NZ_CP022686 | 3,634,614 | A→C | 7.5% | K267N (AAA→AAC) | acnB → | bifunctional aconitate hydratase 2/2‑methylisocitrate dehydratase |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,518 | C→A | 12.4% | C9F (TGC→TTC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,713,182 | A→C | 12.1% | E39D (GAA→GAC) | yaeR → | VOC family protein |
| RA | NZ_CP022686 | 3,770,508 | T→G | 8.1% | intergenic (‑244/+219) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,798,092 | C→A | 10.9% | F333L (TTC→TTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,801,492 | T→G | 6.9% | pseudogene (1768/1773 nt) | CIW80_RS19080 → | ShlB/FhaC/HecB family hemolysin secretion/activation protein |
| MC JC | NZ_CP022686 | 3,844,426 | Δ1,036 bp | 100% | coding (2‑1037/1056 nt) | dinB → | DNA polymerase IV |
| RA | NZ_CP022686 | 3,868,846 | T→G | 12.9% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,895,516 | A→C | 6.3% | intergenic (‑122/+62) | CIW80_RS19510 ← / ← CIW80_RS19515 | protein YkgH/autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 3,925,283 | G→C | 7.2% | S154T (AGC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,345 | T→G | 11.4% | F277V (TTC→GTC) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,376 | T→G | 10.9% | V287G (GTA→GGA) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 11.2% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 4,014,242 | A→T | 11.3% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,056,962 | C→A | 19.9% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,214,235 | C→A | 8.0% | intergenic (‑23/+26) | CIW80_RS21085 ← / ← CIW80_RS21090 | tRNA‑Gln/tRNA‑Met |
| RA | NZ_CP022686 | 4,286,455 | T→G | 9.2% | V38G (GTC→GGC) | cpoB → | cell division protein CpoB |
| RA | NZ_CP022686 | 4,331,940 | A→C | 15.2% | F289V (TTT→GTT) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,412,269 | A→C | 10.6% | F246V (TTT→GTT) | ybjT ← | SDR family oxidoreductase |
| RA | NZ_CP022686 | 4,419,920 | A→G | 100% | intergenic (‑341/+153) | lysO ← / ← aqpZ | L‑lysine exporter LysO/aquaporin Z |
| RA | NZ_CP022686 | 4,419,926 | C→G | 100% | intergenic (‑347/+147) | lysO ← / ← aqpZ | L‑lysine exporter LysO/aquaporin Z |
| RA | NZ_CP022686 | 4,440,329 | T→A | 12.5% | Y796N (TAT→AAT) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,445,534 | T→G | 10.6% | intergenic (+40/‑199) | serS → / → dmsA | serine‑‑tRNA ligase/dimethylsulfoxide reductase subunit A |
| RA | NZ_CP022686 | 4,587,091 | T→G | 14.2% | N609T (AAC→ACC) | CIW80_RS22915 ← | enterotoxin |
| RA | NZ_CP022686 | 4,589,392 | T→G | 7.3% | K238N (AAA→AAC) | CIW80_RS22920 ← | PatB family C‑S lyase |
| RA | NZ_CP022686 | 4,632,182 | T→G | 12.5% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,632,217 | C→A | 7.9% | T288N (ACC→AAC) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,764,880 | T→G | 9.4% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,883 | A→T | 10.8% | intergenic (‑63/‑198) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,780,176 | A→C | 11.0% | intergenic (‑75/+95) | phoP ← / ← purB | two‑component system response regulator PhoP/adenylosuccinate lyase |
| RA | NZ_CP022686 | 4,787,836 | A→C | 10.6% | intergenic (‑89/‑7) | CIW80_RS24075 ← / → CIW80_RS24080 | IS3‑like element ISEc52 family transposase/super‑infection exclusion protein B |
| RA | NZ_CP022686 | 4,839,668 | T→G | 12.1% | V150V (GTA→GTC) | minD ← | septum site‑determining protein MinD |
| MC JC | NZ_CP022686 | 4,844,868 | Δ1,662 bp | 100% | [umuD]–[umuC] | [umuD], [umuC] | |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,910,213 | A→C | 7.8% | F48V (TTT→GTT) | purU ← | formyltetrahydrofolate deformylase |
| RA | NZ_CP022686 | 4,937,070 | A→C | 11.5% | G172G (GGT→GGG) | trpA ← | tryptophan synthase subunit alpha |
| RA | NZ_CP022686 | 4,951,538 | C→A | 26.9% | A44A (GCC→GCA) | topA → | type I DNA topoisomerase |
| RA | NZ_CP022686 | 5,030,756 | G→A | 17.4% | intergenic (‑73/+293) | ompN ← / ← nifJ | porin OmpN/pyruvate:ferredoxin (flavodoxin) oxidoreductase |
| RA | NZ_CP022686 | 5,042,250 | A→T | 6.7% | V627V (GTA→GTT) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,855 | T→A | 13.3% | G1162G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,044,182 | T→A | 8.9% | G1271G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pHH‑29_RBS | 1,534 | G→A | 14.8% | W12* (TGG→TGA) | Aldafermin (NGM282) → | |
| RA | pHH‑29_RBS | 1,674:1 | +A | 79.8% | coding (176/570 nt) | Aldafermin (NGM282) → | |
| RA | pHH‑29_RBS | 2,892 | G→T | 14.5% | intergenic (‑471/+237) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,898 | Δ1 bp | 6.6% | intergenic (‑477/+231) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,899 | Δ1 bp | 100% | intergenic (‑478/+230) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,934 | C→A | 9.1% | intergenic (‑513/+195) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,946 | G→T | 14.7% | intergenic (‑525/+183) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| RA | pHH‑29_RBS | 2,953 | G→T | 12.4% | intergenic (‑532/+176) | mok CDS ← / ← putative HTH domain protein (MarR‑like) | –/– |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 188–2618 | 3085–2957 | 340–2898 | 12432 [12083] | [12067] 12229 | JNG15_RS00005–mobA | JNG15_RS00005,JNG15_RS00010,JNG15_RS00015,mobA |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 262466 = | 2 (0.010) | 165 (0.910) | 58/250 | NT | 98.8% | coding (320/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1524130 | NA (NA) | intergenic (+8/+232) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein | |||||
| * | ? | NZ_CP022686 | = 262468 | 2 (0.010) | 160 (0.890) | 55/250 | NT | 98.8% | coding (322/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1761697 | NA (NA) | intergenic (‑72/‑70) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase | |||||
| * | ? | NZ_CP022686 | 3899666 = | 29 (0.160) | 175 (1.110) | 52/218 | NT | 88.1% | intergenic (‑40/+290) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | 3899944 = | 22 (0.140) | intergenic (‑318/+12) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||
| * | ? | NZ_CP022686 | = 3899681 | 29 (0.160) | 149 (0.950) | 61/218 | NT | 86.3% | intergenic (‑55/+275) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | = 3899927 | 22 (0.140) | intergenic (‑301/+29) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||