mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 119,184 | T→G | 11.8% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 192,476 | T→A | 8.7% | R629R (CGT→CGA) | rsxC → | electron transport complex subunit RsxC |
| RA | NZ_CP022686 | 196,840 | A→C | 6.4% | N132T (AAC→ACC) | dtpA → | dipeptide/tripeptide permease DtpA |
| RA | NZ_CP022686 | 235,846 | A→C | 8.4% | N287T (AAC→ACC) | pykF → | pyruvate kinase PykF |
| RA | NZ_CP022686 | 238,324 | G→C | 18.0% | V85V (GTC→GTG) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 269,554 | A→C | 9.2% | G269G (GGT→GGG) | selO ← | protein adenylyltransferase SelO |
| RA | NZ_CP022686 | 311,464 | A→C | 10.2% | E119D (GAA→GAC) | ydjY → | lipoprotein YdjY |
| RA | NZ_CP022686 | 340,516 | A→C | 14.5% | F31V (TTT→GTT) | ydjK ← | MFS transporter |
| RA | NZ_CP022686 | 350,056 | A→C | 18.3% | K241T (AAA→ACA) | yeaH → | YeaH/YhbH family protein |
| RA | NZ_CP022686 | 359,909 | C→A | 11.2% | D20Y (GAT→TAT) | yoaG ← | DUF1869 domain‑containing protein |
| RA | NZ_CP022686 | 359,976 | C→A | 7.8% | G118G (GGG→GGT) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,227 | T→G | 17.5% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,236 | C→A | 14.3% | D32Y (GAT→TAT) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,256 | C→A | 21.4% | G25V (GGA→GTA) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 372,574 | A→C | 14.5% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 556,942 | G→T | 13.2% | intergenic (+126/‑722) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 585,422 | A→C | 12.1% | V585G (GTG→GGG) | ybtQ ← | yersiniabactin ABC transporter ATP‑binding/permease protein YbtQ |
| RA | NZ_CP022686 | 601,295 | T→G | 22.2% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 22.4% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 631,166 | A→C | 6.9% | L357V (TTA→GTA) | clbO ← | colibactin polyketide synthase ClbO |
| RA | NZ_CP022686 | 651,848 | A→C | 11.3% | R238R (CGT→CGG) | clbJ ← | colibactin non‑ribosomal peptide synthetase ClbJ |
| RA | NZ_CP022686 | 693,001 | A→C | 6.0% | N114T (AAC→ACC) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 766,757 | T→G | 21.1% | K290N (AAA→AAC) | wcaK ← | colanic acid biosynthesis pyruvyl transferase WcaK |
| RA | NZ_CP022686 | 777,337 | A→C | 9.5% | R225R (CGT→CGG) | gmd ← | GDP‑mannose 4,6‑dehydratase |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,441 | C→A | 27.4% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,452 | G→T | 17.0% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,472 | G→T | 17.6% | intergenic (‑61/+166) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,486 | C→A | 9.6% | intergenic (‑75/+152) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 878,917 | A→C | 6.3% | intergenic (+109/+11) | yohD → / ← yohF | DedA family protein/SDR family oxidoreductase |
| RA | NZ_CP022686 | 896,395 | T→G | 10.4% | W17G (TGG→GGG) | yeiG → | S‑formylglutathione hydrolase |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 954,525 | A→C | 12.5% | S38A (TCT→GCT) | ccmF ← | cytochrome c‑type biogenesis heme lyase CcmF |
| RA | NZ_CP022686 | 957,112 | T→G | 13.3% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,005,085 | C→A | 18.1% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,040,890 | T→G | 17.8% | V226G (GTC→GGC) | rbn → | ribonuclease BN |
| RA | NZ_CP022686 | 1,040,909 | A→C | 10.7% | E232D (GAA→GAC) | rbn → | ribonuclease BN |
| RA | NZ_CP022686 | 1,047,906 | G→T | 8.4% | intergenic (‑136/+28) | nuoM ← / ← nuoL | NADH‑quinone oxidoreductase subunit M/NADH‑quinone oxidoreductase subunit L |
| JC | NZ_CP022686 | 1,061,329 | Δ6 bp | 10.6% | coding (42‑47/945 nt) | lrhA ← | transcriptional regulator LrhA |
| RA | NZ_CP022686 | 1,065,997 | A→C | 12.3% | A30A (GCT→GCG) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,112,973 | A→C | 7.6% | V127G (GTG→GGG) | fadJ ← | fatty acid oxidation complex subunit alpha FadJ |
| RA | NZ_CP022686 | 1,174,272 | A→C | 8.7% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| RA | NZ_CP022686 | 1,209,908 | T→G | 21.9% | D396A (GAC→GCC) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,209,917 | G→T | 13.2% | P393Q (CCA→CAA) | eutH ← | ethanolamine utilization protein EutH |
| RA | NZ_CP022686 | 1,213,479 | T→G | 10.1% | G420G (GGA→GGC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,276,970 | A→C | 6.8% | G414G (GGT→GGG) | der ← | ribosome biogenesis GTPase Der |
| RA | NZ_CP022686 | 1,280,117 | T→G | 6.2% | N8H (AAC→CAC) | yfgM ← | ancillary SecYEG translocon subunit YfgM |
| RA | NZ_CP022686 | 1,319,611 | C→A | 16.2% | D325Y (GAT→TAT) | glyA ← | serine hydroxymethyltransferase |
| RA | NZ_CP022686 | 1,325,422 | G→T | 6.9% | Q252K (CAA→AAA) | qseE ← | two component system sensor histidine kinase QseE/GlrK |
| RA | NZ_CP022686 | 1,358,659 | C→A | 6.4% | Y338* (TAC→TAA) | pssA → | CDP‑diacylglycerol‑‑serine O‑phosphatidyltransferase |
| RA | NZ_CP022686 | 1,360,709 | T→G | 8.6% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,724 | G→T | 13.4% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,736 | G→T | 7.0% | intergenic (‑71/+253) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,750 | G→T | 12.2% | intergenic (‑85/+239) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,756 | C→A | 11.3% | intergenic (‑91/+233) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,762 | G→T | 9.8% | intergenic (‑97/+227) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,366,277 | T→G | 11.4% | intergenic (‑278/+164) | CIW80_RS06740 ← / ← clpB | 16S ribosomal RNA/ATP‑dependent chaperone ClpB |
| RA | NZ_CP022686 | 1,371,081 | C→A | 13.6% | P32Q (CCA→CAA) | bamD → | outer membrane protein assembly factor BamD |
| RA | NZ_CP022686 | 1,392,487 | A→C | 7.9% | T43P (ACG→CCG) | lhgO → | L‑2‑hydroxyglutarate oxidase |
| RA | NZ_CP022686 | 1,441,800 | T→G | 5.2% | N587T (AAC→ACC) | hypF ← | carbamoyltransferase HypF |
| RA | NZ_CP022686 | 1,447,152 | G→T | 8.2% | R51S (CGC→AGC) | hycI ← | hydrogenase maturation peptidase HycI |
| RA | NZ_CP022686 | 1,479,585 | T→A | 8.6% | K3* (AAA→TAA) | ftsB ← | cell division protein FtsB |
| RA | NZ_CP022686 | 1,479,607 | A→C | 12.1% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,504,355 | T→A | 12.2% | A264A (GCT→GCA) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,361 | G→T | 16.5% | V266V (GTG→GTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,535,365 | A→C | 22.4% | K35N (AAA→AAC) | fucI → | L‑fucose isomerase |
| RA | NZ_CP022686 | 1,546,985 | A→T | 8.5% | intergenic (+7/‑27) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,003 | G→C | 11.5% | intergenic (+25/‑9) | CIW80_RS07705 → / → CIW80_RS07710 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,547,110 | G→C | 18.7% | intergenic (+22/‑12) | CIW80_RS07710 → / → CIW80_RS07715 | tRNA‑Met/tRNA‑Met |
| RA | NZ_CP022686 | 1,558,372 | A→C | 6.4% | R457R (AGG→CGG) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,558,395 | A→C | 9.6% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 10.5% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,579,306 | A→C | 6.1% | G109G (GGT→GGG) | CIW80_RS07835 ← | PRD domain‑containing protein |
| RA | NZ_CP022686 | 1,632,501 | T→G | 8.0% | V166G (GTT→GGT) | arcC → | carbamate kinase |
| RA | NZ_CP022686 | 1,633,846 | T→G | 27.8% | N253T (AAC→ACC) | yqeB ← | selenium‑dependent molybdenum cofactor biosynthesis protein YqeB |
| RA | NZ_CP022686 | 1,640,925 | A→C | 10.0% | R7S (AGA→AGC) | ygfM → | molybdopterin‑dependent oxidoreductase FAD‑binding subunit |
| RA | NZ_CP022686 | 1,674,231 | A→T | 11.2% | V186E (GTA→GAA) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,244 | T→G | 9.5% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 11.2% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,758,771 | T→G | 7.2% | intergenic (+18/‑254) | sat → / → CIW80_RS08700 | serine protease autotransporter toxin Sat/transposase |
| RA | NZ_CP022686 | 1,805,023 | C→A | 9.1% | pseudogene (304/934 nt) | CIW80_RS09020 → | nucleotidyl transferase AbiEii/AbiGii toxin family protein |
| RA | NZ_CP022686 | 1,833,745 | T→G | 18.2% | N468H (AAC→CAC) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,833,762 | A→C | 12.9% | L462R (CTG→CGG) | gspD ← | type II secretion system secretin GspD |
| RA | NZ_CP022686 | 1,911,587 | C→A | 6.5% | R229L (CGT→CTT) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 1,925,332 | A→C | 9.8% | N151T (AAC→ACC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,925,365 | A→C | 5.6% | D162A (GAC→GCC) | ygiB → | DUF1190 family protein |
| RA | NZ_CP022686 | 1,979,438 | T→G | 7.5% | F531V (TTT→GTT) | ygjK → | alpha‑glucosidase |
| RA | NZ_CP022686 | 2,037,515 | G→T | 9.1% | E506* (GAA→TAA) | lpoA → | penicillin‑binding protein activator LpoA |
| RA | NZ_CP022686 | 2,037,521 | A→C | 8.7% | T508P (ACC→CCC) | lpoA → | penicillin‑binding protein activator LpoA |
| RA | NZ_CP022686 | 2,049,089 | T→G | 18.9% | N256T (AAC→ACC) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,049,112 | C→A | 12.7% | A248A (GCG→GCT) | deaD ← | ATP‑dependent RNA helicase DeaD |
| RA | NZ_CP022686 | 2,056,143 | A→C | 5.2% | S623A (TCC→GCC) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,056,168 | A→C | 8.2% | G614G (GGT→GGG) | infB ← | translation initiation factor IF‑2 |
| RA | NZ_CP022686 | 2,061,780 | A→C | 9.3% | K383N (AAA→AAC) | argG → | argininosuccinate synthase |
| RA | NZ_CP022686 | 2,072,535 | G→T | 6.3% | H357N (CAC→AAC) | cgtA ← | Obg family GTPase CgtA |
| RA | NZ_CP022686 | 2,076,552 | A→C | 7.6% | intergenic (+22/‑211) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,076,554 | T→G | 14.3% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,076,556 | C→G | 5.7% | intergenic (+26/‑207) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,090,800 | T→G | 7.2% | S166A (TCG→GCG) | yrbL → | PhoP regulatory network protein YrbL |
| RA | NZ_CP022686 | 2,110,457 | T→G | 12.8% | K12N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,465 | T→G | 9.2% | T10P (ACC→CCC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,481 | A→T | 6.4% | F4L (TTT→TTA) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,123,241 | A→C | 9.2% | F208V (TTT→GTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,148,109 | T→G | 12.5% | V124G (GTG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,115 | T→G | 15.0% | L126R (CTG→CGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,136 | T→G | 8.6% | V133G (GTT→GGT) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,141 | T→G | 14.4% | F135V (TTC→GTC) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,160 | T→G | 6.3% | V141G (GTG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,172,177 | A→C | 5.6% | G87G (GGT→GGG) | smg ← | DUF494 family protein Smg |
| RA | NZ_CP022686 | 2,185,075 | A→C | 10.5% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,188,218 | A→C | 6.8% | intergenic (‑87/+78) | rplN ← / ← rpsQ | 50S ribosomal protein L14/30S ribosomal protein S17 |
| RA | NZ_CP022686 | 2,194,054 | G→T | 7.1% | Q444K (CAA→AAA) | gspA ← | type II secretion system protein GspA |
| RA | NZ_CP022686 | 2,207,086 | T→A | 6.5% | intergenic (‑110/+59) | bfd ← / ← chiA | bacterioferritin‑associated ferredoxin/bifunctional chitinase/lysozyme |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,222,564 | A→C | 7.9% | T428P (ACG→CCG) | yheS → | ABC transporter ATP‑binding protein |
| RA | NZ_CP022686 | 2,226,139 | A→C | 6.1% | D9A (GAC→GCC) | crp → | cAMP‑activated global transcriptional regulator CRP |
| RA | NZ_CP022686 | 2,310,451 | C→A | 9.7% | E241* (GAA→TAA) | glgP ← | glycogen phosphorylase |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,357,324 | A→C | 14.9% | N37T (AAC→ACC) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,380,922 | A→C | 8.7% | S182R (AGC→CGC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,380,936 | A→C | 7.9% | K186N (AAA→AAC) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,386,496 | T→G | 6.1% | K417N (AAA→AAC) | prlC ← | oligopeptidase A |
| RA | NZ_CP022686 | 2,394,287 | T→G | 14.1% | N115T (AAC→ACC) | chuS ← | hematinate‑forming heme oxygenase ChuS |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,460,579 | T→A | 20.0% | intergenic (‑1/‑157) | yhjY ← / → tag | autotransporter outer membrane beta‑barrel domain‑containing protein/DNA‑3‑methyladenine glycosylase I |
| RA | NZ_CP022686 | 2,470,422 | T→G | 11.4% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| RA | NZ_CP022686 | 2,546,394 | A→C | 13.2% | V95G (GTT→GGT) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,546,400 | A→C | 10.4% | L93R (CTG→CGG) | waaG ← | glycosyltransferase family 4 protein |
| RA | NZ_CP022686 | 2,550,305 | T→G | 5.4% | K151N (AAA→AAC) | mutM ← | bifunctional DNA‑formamidopyrimidine glycosylase/DNA‑(apurinic or apyrimidinic site) lyase |
| RA | NZ_CP022686 | 2,572,721 | A→C | 9.6% | F186C (TTT→TGT) | CIW80_RS12885 ← | ROK family protein |
| RA | NZ_CP022686 | 2,574,429 | T→G | 12.3% | N230T (AAC→ACC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| RA | NZ_CP022686 | 2,574,467 | C→G | 7.0% | Q217H (CAG→CAC) | CIW80_RS12895 ← | class II fructose‑bisphosphate aldolase family protein |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,617,885 | T→G | 7.7% | K190N (AAA→AAC) | ilvB ← | acetolactate synthase large subunit |
| RA | NZ_CP022686 | 2,717,400 | T→G | 6.9% | L101V (TTA→GTA) | ilvA → | threonine ammonia‑lyase, biosynthetic |
| RA | NZ_CP022686 | 2,733,571 | T→G | 10.4% | F53V (TTT→GTT) | rffG → | dTDP‑glucose 4,6‑dehydratase |
| RA | NZ_CP022686 | 2,736,586 | A→C | 14.7% | Y183S (TAC→TCC) | rffA → | dTDP‑4‑amino‑4,6‑dideoxygalactose transaminase |
| RA | NZ_CP022686 | 2,743,563 | T→G | 14.1% | noncoding (65/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,758,113 | A→C | 5.7% | A35A (GCA→GCC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,758,146 | G→C | 5.8% | T46T (ACG→ACC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,801,827 | C→A | 8.8% | E29* (GAA→TAA) | CIW80_RS14030 ← | 2‑dehydro‑3‑deoxy‑6‑phosphogalactonate aldolase |
| RA | NZ_CP022686 | 2,811,073 | G→T | 6.8% | P110Q (CCG→CAG) | rfaH ← | transcription/translation regulatory transformer protein RfaH |
| RA | NZ_CP022686 | 2,834,869 | G→T | 9.2% | E592* (GAA→TAA) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,834,886 | A→C | 13.5% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,834,892 | G→C | 6.1% | L599L (CTG→CTC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,834,898 | A→C | 9.7% | K601N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,849,863 | G→T | 7.3% | I174I (ATC→ATA) | CIW80_RS14255 ← | DeoR/GlpR family DNA‑binding transcription regulator |
| RA | NZ_CP022686 | 2,868,740 | T→G | 23.6% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,753 | T→G | 16.5% | T18P (ACC→CCC) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,920,418 | C→A | 6.0% | A65E (GCA→GAA) | CIW80_RS14610 → | bifunctional UDP‑sugar hydrolase/5'‑nucleotidase |
| RA | NZ_CP022686 | 2,937,268 | G→T | 5.9% | P199Q (CCA→CAA) | yijO ← | AraC family transcriptional regulator |
| RA | NZ_CP022686 | 2,989,627 | T→G | 7.2% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 2,994,693 | T→G | 8.8% | W162G (TGG→GGG) | yjaH → | DUF1481 domain‑containing protein |
| RA | NZ_CP022686 | 3,098,847 | A→C | 8.6% | intergenic (+17/+22) | CIW80_RS15415 → / ← actP | LrgB family protein/cation/acetate symporter ActP |
| RA | NZ_CP022686 | 3,163,954 | A→C | 6.8% | T400P (ACC→CCC) | melA → | alpha‑galactosidase |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,265,096 | G→T | 11.4% | A73E (GCA→GAA) | ytfJ ← | YtfJ family protein |
| RA | NZ_CP022686 | 3,287,046 | A→C | 7.2% | K117N (AAA→AAC) | cybC → | cytochrome b562 |
| RA | NZ_CP022686 | 3,297,360 | T→G | 10.0% | L837V (TTA→GTA) | mgtA → | magnesium‑translocating P‑type ATPase |
| RA | NZ_CP022686 | 3,348,371 | T→G | 6.3% | intergenic (‑187/‑13) | CIW80_RS16685 ← / → CIW80_RS26495 | inovirus Gp2 family protein/hypothetical protein |
| RA | NZ_CP022686 | 3,348,386 | C→A | 5.0% | M1M (ATC→ATA) † | CIW80_RS26495 → | hypothetical protein |
| RA | NZ_CP022686 | 3,357,439 | G→T | 7.7% | G8C (GGT→TGT) | CIW80_RS16765 → | DUF932 domain‑containing protein |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 14.5% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,459,370 | C→A | 11.1% | S62Y (TCT→TAT) | bglJ → | DNA‑binding transcriptional activator BglJ |
| RA | NZ_CP022686 | 3,461,215 | A→T | 11.2% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,226 | T→G | 12.0% | noncoding (87/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 22.8% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,247 | A→C | 14.8% | noncoding (66/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,469,923 | T→G | 7.2% | E122D (GAA→GAC) | yjjW ← | YjjW family glycine radical enzyme activase |
| MC JC | NZ_CP022686 | 3,559,837 | Δ2,343 bp | 100% | coding (10‑2352/2352 nt) | polB ← | DNA polymerase II |
| RA | NZ_CP022686 | 3,604,564 | G→T | 22.5% | intergenic (+80/‑151) | lpxC → / → secM | UDP‑3‑O‑acyl‑N‑acetylglucosamine deacetylase/secA translation cis‑regulator SecM |
| RA | NZ_CP022686 | 3,606,036 | G→T | 10.2% | E250* (GAA→TAA) | secA → | preprotein translocase subunit SecA |
| RA | NZ_CP022686 | 3,625,683 | T→G | 8.9% | A150A (GCT→GCG) | aceE → | pyruvate dehydrogenase (acetyl‑transferring), homodimeric type |
| RA | NZ_CP022686 | 3,650,128 | T→G | 9.9% | V25G (GTT→GGT) | CIW80_RS18240 → | hypothetical protein |
| RA | NZ_CP022686 | 3,652,079 | T→G | 8.6% | intergenic (‑88/+24) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,652,090 | T→G | 8.0% | intergenic (‑99/+13) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,655,536 | G→C | 7.0% | A766G (GCT→GGT) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,075 | C→A | 5.8% | D157Y (GAC→TAC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,680,536 | A→C | 5.9% | V45G (GTT→GGT) | btuF ← | vitamin B12 ABC transporter substrate‑binding protein BtuF |
| RA | NZ_CP022686 | 3,703,648 | A→C | 8.2% | T120P (ACG→CCG) | fabZ → | 3‑hydroxyacyl‑ACP dehydratase FabZ |
| RA | NZ_CP022686 | 3,710,986 | T→G | 5.2% | V40G (GTT→GGT) | ldcC → | lysine decarboxylase LdcC |
| RA | NZ_CP022686 | 3,734,367 | T→G | 17.0% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,372 | C→G | 10.6% | G226G (GGC→GGG) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,736,531 | T→G | 11.2% | N74H (AAC→CAC) | mltD ← | murein transglycosylase D |
| RA | NZ_CP022686 | 3,770,508 | T→G | 8.9% | intergenic (‑244/+219) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,770,509 | A→T | 7.3% | intergenic (‑245/+218) | CIW80_RS26265 ← / ← CIW80_RS18890 | ATP‑binding protein/hypothetical protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| RA | NZ_CP022686 | 3,797,481 | T→G | 12.2% | L130V (TTA→GTA) | CIW80_RS19065 → | LacI family DNA‑binding transcriptional regulator |
| RA | NZ_CP022686 | 3,806,265 | T→A | 8.3% | Y1586N (TAC→AAC) | cdiA → | contact‑dependent inhibition effector tRNA nuclease |
| MC JC | NZ_CP022686 | 3,844,426 | Δ1,036 bp | 100% | coding (2‑1037/1056 nt) | dinB → | DNA polymerase IV |
| RA | NZ_CP022686 | 3,868,846 | T→G | 10.2% | T383P (ACG→CCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,885,457 | A→C | 11.7% | N1404T (AAC→ACC) | fdeC → | inverse autotransporter adhesin FdeC |
| RA | NZ_CP022686 | 3,897,759 | A→T | 10.2% | pseudogene (117/1083 nt) | hyxB ← | outer membrane autotransporter HyxB |
| RA | NZ_CP022686 | 3,925,289 | A→C | 9.2% | N156T (AAC→ACC) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,928,345 | T→G | 6.6% | F277V (TTC→GTC) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,928,356 | T→G | 5.3% | A280A (GCT→GCG) | prpE → | propionate‑‑CoA ligase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 9.3% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,940,724 | A→C | 10.5% | V308G (GTA→GGA) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,949,969 | T→G | 9.1% | D141A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,977,656 | A→C | 7.7% | K88N (AAA→AAC) | phoR → | phosphate regulon sensor histidine kinase PhoR |
| RA | NZ_CP022686 | 3,979,408 | T→G | 7.6% | V105G (GTT→GGT) | brnQ → | branched‑chain amino acid transporter carrier protein BrnQ |
| RA | NZ_CP022686 | 3,981,933 | T→G | 14.0% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,004,135 | T→G | 12.1% | R29R (CGT→CGG) | yajQ → | nucleotide binding protein YajQ |
| RA | NZ_CP022686 | 4,014,225 | C→G | 8.1% | intergenic (+71/‑273) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,238 | C→G | 13.4% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,291 | G→T | 19.2% | intergenic (+137/‑207) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,032,257 | G→T | 13.1% | E95* (GAA→TAA) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,032,292 | A→C | 12.4% | E106D (GAA→GAC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,056,962 | C→A | 25.5% | F137L (TTC→TTA) | adk → | adenylate kinase |
| RA | NZ_CP022686 | 4,079,329 | A→C | 11.1% | S170A (TCA→GCA) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | NZ_CP022686 | 4,213,260 | T→G | 7.3% | C188W (TGT→TGG) | ubiF → | 3‑demethoxyubiquinol 3‑hydroxylase |
| RA | NZ_CP022686 | 4,286,467 | T→G | 6.7% | V42G (GTC→GGC) | cpoB → | cell division protein CpoB |
| RA | NZ_CP022686 | 4,290,635 | T→G | 6.6% | T109P (ACC→CCC) | ybgS ← | YbgS‑like family protein |
| RA | NZ_CP022686 | 4,331,929 | C→A | 13.6% | M292I (ATG→ATT) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,331,940 | A→C | 16.5% | F289V (TTT→GTT) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,338,890 | A→C | 5.3% | Q441H (CAA→CAC) | rhlE → | ATP‑dependent RNA helicase RhlE |
| RA | NZ_CP022686 | 4,439,653 | A→C | 7.0% | K570N (AAA→AAC) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,440,328 | A→T | 10.1% | Q795H (CAA→CAT) | ftsK → | DNA translocase FtsK |
| RA | NZ_CP022686 | 4,461,745 | G→T | 5.9% | intergenic (+99/‑71) | aroA → / → ycaL | 3‑phosphoshikimate 1‑carboxyvinyltransferase/metallopeptidase YcaL |
| RA | NZ_CP022686 | 4,485,614 | T→G | 10.1% | F139V (TTT→GTT) | gloC → | hydroxyacylglutathione hydrolase GloC |
| RA | NZ_CP022686 | 4,605,579 | T→G | 12.9% | T56P (ACG→CCG) | CIW80_RS23010 ← | hypothetical protein |
| RA | NZ_CP022686 | 4,632,182 | T→G | 10.4% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,661,459 | T→G | 6.9% | pseudogene (559/655 nt) | CIW80_RS26570 → | hypothetical protein |
| RA | NZ_CP022686 | 4,678,047 | A→C | 22.7% | intergenic (+45/‑76) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,712,763 | A→C | 16.7% | A52A (GCT→GCG) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,764,877 | T→G | 14.2% | intergenic (‑57/‑204) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,783,334 | A→C | 13.5% | V32G (GTC→GGC) | mnmA ← | tRNA 2‑thiouridine(34) synthase MnmA |
| RA | NZ_CP022686 | 4,787,799 | C→A | 8.3% | intergenic (‑52/‑44) | CIW80_RS24075 ← / → CIW80_RS24080 | IS3‑like element ISEc52 family transposase/super‑infection exclusion protein B |
| RA | NZ_CP022686 | 4,839,668 | T→G | 16.1% | V150V (GTA→GTC) | minD ← | septum site‑determining protein MinD |
| RA | NZ_CP022686 | 4,839,687 | T→G | 7.6% | N144T (AAC→ACC) | minD ← | septum site‑determining protein MinD |
| MC JC | NZ_CP022686 | 4,844,868 | Δ1,662 bp | 100% | [umuD]–[umuC] | [umuD], [umuC] | |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 5,001,125 | A→C | 12.3% | N150T (AAC→ACC) | ompG → | monomeric porin OmpG |
| RA | NZ_CP022686 | 5,001,157 | G→T | 15.2% | D161Y (GAT→TAT) | ompG → | monomeric porin OmpG |
| RA | NZ_CP022686 | 5,043,558 | T→C | 8.3% | S1063S (AGT→AGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,648 | G→C | 5.5% | V1093V (GTG→GTC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,855 | T→C | 7.2% | G1162G (GGT→GGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 2,031 | G→A | 100% | intergenic (‑235/‑1500) | putative rom (RNA I inhibition modulator protein) ← / → ompA | –/– |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,595 | Δ50 bp | 13.4% | [IL2wt no signal] | [IL2wt no signal] | |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,595 | Δ15 bp | 100% | [IL2wt no signal] | [IL2wt no signal] | |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,762 | G→T | 57.6% | E52* (GAA→TAA) | IL2wt no signal → | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 395–2618 | 3049–2957 | 340–2655 | 8361 [8348] | [8220] 8451 | [JNG15_RS00005]–mobA | [JNG15_RS00005],JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMut‑Ompa‑D5‑IL2wt‑His6 | 4744–4810 | 5417–5214 | 405–674 | 7059 [7003] | [6662] 7517 | [putative HTH domain protein] | [putative HTH domain protein] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 262466 = | 2 (0.010) | 218 (0.960) | 63/250 | NT | 99.1% | coding (320/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1524130 | NA (NA) | intergenic (+8/+232) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein | |||||
| * | ? | NZ_CP022686 | = 262468 | 2 (0.010) | 222 (0.980) | 67/250 | NT | 99.1% | coding (322/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1761697 | NA (NA) | intergenic (‑72/‑70) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase | |||||
| * | ? | NZ_CP022686 | 1522881 = | NA (NA) | 2195 (0.400) | 150/250 | NT | 38.3% | intergenic (‑394/‑72) | yqcC/CIW80_RS07590 | YqcC family protein/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3537 | 3530 (0.320) | coding (7/63 nt) | ompA | ||||||
| * | ? | NZ_CP022686 | 1522881 = | NA (NA) | 144 (0.030) +GTAGGGG |
54/236 | NT | 92.1% | intergenic (‑394/‑72) | yqcC/CIW80_RS07590 | YqcC family protein/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 13 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | 1522881 = | NA (NA) | 139 (0.030) | 48/250 | NT | 47.4% | intergenic (‑394/‑72) | yqcC/CIW80_RS07590 | YqcC family protein/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3619 = | 154 (0.010) | coding (11/399 nt) | IL2wt no signal | ||||||
| * | ? | NZ_CP022686 | = 1524129 | NA (NA) | 1655 (0.300) | 93/248 | NT | 29.3% | intergenic (+7/+233) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3534 = | 4019 (0.370) | coding (4/63 nt) | ompA | ||||||
| * | ? | NZ_CP022686 | = 1524130 | NA (NA) | 132 (0.020) | 55/250 | NT | 91.0% | intergenic (+8/+232) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3614 = | 13 (0.000) | coding (6/399 nt) | IL2wt no signal | ||||||
| * | ? | NZ_CP022686 | 1760445 = | NA (NA) | 14 (0.000) +38 bp |
11/174 | NT | 60.7% | coding (1096/1101 nt) | CIW80_RS08705 | IS30‑like element IS30 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 13 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | = 1761699 | NA (NA) | 18 (0.000) +21 bp |
17/208 | NT | 62.5% | intergenic (‑74/‑68) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 13 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | = 2700946 | NA (NA) | 14 (0.000) +40 bp |
11/170 | NT | 61.3% | intergenic (+9/+8) | CIW80_RS13525/mdtD | IS3‑like element ISEc52 family transposase/multidrug transporter subunit MdtD |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 13 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | 3369608 = | NA (NA) | 131 (0.030) +AGAGGTAGGGG |
49/228 | NT | 91.7% | intergenic (‑1/+10) | CIW80_RS16840/CIW80_RS16845 | restriction endonuclease/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 13 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | 3393988 = | NA (NA) | 22 (0.000) +CGTCGATGAAGAGGTAGGGG |
14/210 | NT | 66.8% | intergenic (‑51/+11) | CIW80_RS16975/CIW80_RS16980 | hypothetical protein/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | = 3594 | 13 (0.000) | intergenic (+1/‑15) | ompA/IL2wt no signal | –/– | |||||
| * | ? | NZ_CP022686 | 3393989 = | NA (NA) | 13 (0.000) +28 bp |
10/194 | NT | 56.3% | intergenic (‑52/+10) | CIW80_RS16975/CIW80_RS16980 | hypothetical protein/IS3‑like element ISEc52 family transposase |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3609 = | 13 (0.000) | coding (1/399 nt) | IL2wt no signal | ||||||
| * | ? | NZ_CP022686 | 3899666 = | 248 (1.100) | 19 (0.100) | 17/218 | NT | 7.9% | intergenic (‑40/+290) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | 3899944 = | 228 (1.160) | intergenic (‑318/+12) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||
| * | ? | NZ_CP022686 | = 3899681 | 240 (1.060) | 22 (0.110) | 14/218 | NT | 9.1% | intergenic (‑55/+275) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA |
| ? | NZ_CP022686 | = 3899927 | 228 (1.160) | intergenic (‑301/+29) | hyxR/ipbA | LuxR family transcriptional regulator HyxR/tyrosine‑type DNA invertase IpbA | |||||
| * | ? | NZ_CP022686 | 4514374 = | 245 (1.080) | 7 (0.000) +AGCT |
7/242 | NT | 5.3% | coding (59/1053 nt) | ompA | porin OmpA |
| ? | pMut‑Ompa‑D5‑IL2wt‑His6 | 3609 = | 13 (0.000) | coding (1/399 nt) | IL2wt no signal | ||||||