| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 1,174,272 | A→C | 14.4% | intergenic (+1/‑43) | CIW80_RS05855 → / → CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP022686 | 1,174,272 | 0 | A | C | 14.4% | 273.2 / 8.8 | 156 | intergenic (+1/‑43) | CIW80_RS05855/CIW80_RS05860 | tRNA‑Val/tRNA‑Val |
| Reads supporting (aligned to +/- strand): ref base A (46/83); new base C (25/2); total (71/85) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.49e-08 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 171 total aligned reads displayed.
TTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAGA > NZ_CP022686/1174134‑1174407 | tttCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATCATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAac < 8:639985/140‑1 (MQ=255)tttCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCACCCACCAac < 4:930122/140‑1 (MQ=255)tttCTTTAGAAAATGCGTAGACTCATTTTGAACTCTCCCTCAAATGCGACTCCACACTGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTGCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAac < 8:445242/140‑1 (MQ=21)tgtCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTAGGCGGTTCGATCCCGTCATCACCCACCAac < 5:791019/138‑1 (MQ=255) tCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAacta < 6:381779/140‑1 (MQ=255) tCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAacta < 4:1015873/140‑1 (MQ=255) tCTTTAGAAAATGCGGTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAac < 2:178931/138‑1 (MQ=255) tttAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATACTGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCGTCACCCACCAactact < 5:16943/140‑1 (MQ=255) aGAAACTGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCACTTACCAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTAt < 6:943346/140‑1 (MQ=255) aGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACCCAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTAt < 7:566141/140‑1 (MQ=255) aaatTGCGTTGACTCATTTTGAACTCTCCCTATAATTCGACTCCACACAGAGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGTGGTCGGCGGTTCGATCCCGTCATCTCCCACCAACTACTTATGt < 4:715275/140‑1 (MQ=25) aaaaTGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGt < 6:469852/140‑1 (MQ=255) aaaTGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCCCACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATg < 1:840327/138‑1 (MQ=255) aTGCGTTGTCTCTTTTTGAACTCTCCCTATAATGCGACTCCACACCGCGGGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCACCCACCAACTACTTATGTAGt < 7:954118/140‑1 (MQ=25) gCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGGGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGtct < 3:633109/140‑1 (MQ=255) cGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGtctc < 4:608313/140‑1 (MQ=255) gACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTCCTGAGGTAGTCTccgcg > 5:303058/1‑139 (MQ=255) tttGAACTCTCCCTATACTGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGc < 4:1021132/140‑1 (MQ=255) gAACTCTCCCTATAATGCGACTCCTAAGAGCGGGGGTGATTAGCTAAGCTGTGAGAGCAACTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAg < 6:240838/140‑1 (MQ=25) gAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAg < 3:365626/140‑1 (MQ=255) gAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTAATGTAGTATCAGCCTTGTATCaat > 5:11801/1‑139 (MQ=21) aaCTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACGTACTTTAGTTGTCTCCGGAGTGACGCAAgt > 7:771843/1‑139 (MQ=18) ctcCCTATAATGCGACTCAACACCGCGGTGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAAtt < 5:479027/140‑1 (MQ=255) tcCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTATGAATTCTCCGGAGTTTAGCAATAAGTTg > 7:32183/1‑140 (MQ=18) cTATAATGCGACTCCACACAGCGGGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTgaga < 8:71079/140‑1 (MQ=255) tattGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGaa < 2:607241/135‑1 (MQ=255) taATGCGACTCCACACAGCGGGGGTGATTAGCTCTGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGt < 3:962389/140‑1 (MQ=255) taATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGt < 3:151859/140‑1 (MQ=255) aTGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTgg < 5:590708/140‑1 (MQ=255) aTGCGACTCCACACAGCGGGGGTGATTAGCGCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTgg < 5:117972/140‑1 (MQ=255) tGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACATACTGTGGTAGTCTCAGACGGGTTGCAAGAAATAGAGAAGTggg > 4:372460/1‑140 (MQ=18) gCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTAAGTAGTCTCCGCCGTGTAGCAAGAAAATGATAAGTCGGt > 4:445025/1‑140 (MQ=21) gCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTCCGTTGGTAGTCTCCGGCGGGTAGCAAGATATTGAGAAGtcgtt > 3:219714/1‑136 (MQ=18) cGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTggg < 1:725182/138‑1 (MQ=255) gACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGa > 4:300639/1‑140 (MQ=255) gACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGa > 4:182143/1‑140 (MQ=255) aCTCCACACCGCGGGGGTGAGTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGCGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGAt < 5:1052623/140‑1 (MQ=255) cTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTCCTGACGTTCTCTCCGAGGGGTAGCAAGATGATGTGAAGTGGGTGGtt > 8:341657/1‑140 (MQ=14) cTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTGAGGTAGGCTCAGACGGGTCGCAAGAAGATGATAAGTGGGTGagt > 6:531958/1‑138 (MQ=17) cTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATCTAGTCTCAGCCCTGTAGAAAGATATTGAGACGTGGGTGAtt > 7:744494/1‑140 (MQ=21) cTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGAACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTAGGTTGTCTCAGCCGTGTAGCAAGAAATTTTGAAGTGGGTgg > 1:1110645/1‑137 (MQ=18) tCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACGTACTAAGGAAGTATCCGCCGTGTAAAAATAATTTGAAAAGTGGGTGAt > 2:851263/1‑138 (MQ=17) ccacaGCGGGTGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACACACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGCGAAGTGGGTGATTAGCt < 3:898099/139‑1 (MQ=255) acacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCt < 8:930319/140‑1 (MQ=255) acacaGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCt < 7:514296/140‑1 (MQ=255) cgCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCa < 2:544156/137‑1 (MQ=255) cGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCACGTACGGTAGTAGTCTCCGCCGTGTAACAAGAAAATGTTAAGTGGGTTATTAGCAGAGCTg > 6:105010/1‑140 (MQ=17) cGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACATACTTAAGTTGTCTCCGCCGTGTTGCAAGTTGTTGTGAAGTGGGTTTTTAGCTcttcag > 7:157892/1‑135 (MQ=17) cGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTgg < 3:114544/124‑1 (MQ=255) cGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTGAAGTAGTCTCCGCCGTGTACAAAGTAATTGATAAGTGGGTGATTAGCACAgaag > 4:477203/1‑137 (MQ=18) ggggTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGGCGTGTAGCAAGATTTTGAGAAGTGGGTGGTTAGCTCAGCTg > 1:414056/1‑138 (MQ=255) gggTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTTGTCTCAGGCGGGTAGCAAGATCTTGAGAAGTGGGTGATTAGCTCAGCTGGga > 4:173881/1‑140 (MQ=21) gTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTTTGTAGTCTCAGGAGTGTAGCAAGAAAATGTTAAGTGAGTTCTTAGCTGAGCTggtt > 1:1003297/1‑136 (MQ=17) aTTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTTAGTAGTCTCGGGCGTGGAGGAAGAAATTGTGAAGTGGGGGGTTAGGTCCGCTgggggggcc > 3:1013212/1‑134 (MQ=17) ttatcgcAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGGCTGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGAAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 8:578168/134‑1 (MQ=37) ttAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCTTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 3:1102575/140‑1 (MQ=255) ttAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCTAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 3:199514/140‑1 (MQ=255) ttAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 3:300639/140‑1 (MQ=255) ttAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 8:843135/140‑1 (MQ=255) ttAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGGCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTCTGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 7:444933/140‑1 (MQ=255) ttAGCTCAGCGGGGAGAGCACCTCCCTTACAAGGAGGGGGGCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 7:177701/140‑1 (MQ=255) tAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTGGCTCCCGTCATCACCCACCACCTACTTATGTAGTCTCCGGCGGGTTGGAAGGTATTGAGTATTGGGTGAGTAGCTACTCTGGGAGAGCAcc > 3:261051/1‑140 (MQ=17) agcgctgCTTGGAGAGCACCTCCCGTACAAGGATGGGGTAGGCGTGTAGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTTGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCt < 4:1148134/134‑1 (MQ=37) aGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCAc < 1:231463/138‑1 (MQ=255) aGCGCAGCTGGGAGAGCACCTCCCTTACACGGAGGGGGTCGGCGGGTCGATCCAGTCATCAACCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGAGATTAGCTCAGCTGGGAGAGCACCt < 6:794982/140‑1 (MQ=37) cTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGTCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCt < 1:350523/138‑1 (MQ=255) cAGCTTGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCTTCATCACCCACCAAGTACTTATGTAGTCTCCGCTGTGTAGCAAGAAATTGAGACGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCt < 4:616644/140‑1 (MQ=37) cTGTGAGAGCACCTCACTTAAAAGGAGTGGTGCGGCGTTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCGGTGTAGCAAGAATTTGTGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTAc < 6:662768/140‑1 (MQ=37) cTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCCGCTGGGAGAGCCCCTcccgtcc > 7:609586/1‑136 (MQ=255) cTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGGGTAGCAAGAAAATGAGAAGTGGGTGGTTAGCTCAGCTGGGAGAGCACCTCCCGTAc > 3:796917/1‑140 (MQ=255) cTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAAATACTTATGTAGTCTCCGACGGGTAGCAAGAAATTGAGAATTGGTTGATTAGCTCTGCTGGTAGAGCACCTCCCATAc > 5:254093/1‑140 (MQ=25) ggAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAAATACTTAAGTAGTCTCAGGAGTGTAAGAAGATTTTTATAAGTGGGTTATTAGCACTGCTGGTAGAGCAACTCCCGAACaat > 6:475528/1‑139 (MQ=12) gagaGCACCTCCCTTACACGGAGGTGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTTTAGCAAGAAAATGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACaa < 1:700225/138‑1 (MQ=255) gagaGCACCTCCATTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAagg < 4:835392/140‑1 (MQ=255) cccTTACAAGGCGGGGGTCGGCTGTTCGATCCCGTAATCACCCACAACATACTTCTGTATGAACCGCCGTGTAGCACTTAATTCATAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTcgg < 4:1107875/140‑1 (MQ=18) aCAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCa < 2:702000/99‑1 (MQ=255) aggaggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTGCTTATGTAGACGCGGTCGGGTAGCAAGCTATTGAAAAGTTGTTGATTAGGTCGGCTGGGAGATCACCTACATAAAAAGGAGGGGGTcggcgggtggg > 8:751204/1‑135 (MQ=16) ttaggGGGGCGGCGTTTCGATTCCGTAATCACACACCAACTACTTATGTATTCTCCGCGGTGTAGCAAGAAATTGAGCAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTGCGAt < 6:55605/138‑1 (MQ=21) aggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTTTGTAGTCTCCGCCGTGTAGCAAGATTTTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCATACAAGGAGGGGGTCGGCGGTTAGATcc > 7:705904/1‑140 (MQ=25) aggGGGTCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTAAGTTGTCTCCGCAGTGTAGCAAGAATTATATAAGTCTGTGATTAGCTCAGAAGCGAGCGCACCTCCCCAACAATGATGAAGTCCGCGGTTCGTTcc > 4:413247/1‑140 (MQ=16) gggggTCGGCGGTTCGATCCCGTCATCACCCCCCAACTACTGATGTTGTCTCCGGCGTGTTAGAAGTTTGTGAGAAATGGGTGGTTAGCTGTGCTGGGCGATCCCCTCCCGACCAAGGATGGGTTCGGCGGGTCgggccc > 8:305447/1‑135 (MQ=255) ggggTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTGATGTAGTCTCCGCCGTGTAGCAAGATTTAGAGAAGTGGGTGATTAGCTCAGCTGCGTGCGCACCGCCCTAACAAGGAGGAGGTCGGCGGGTCGagaccg > 8:137916/1‑135 (MQ=25) ggggTCGGCGGTTCGATCCCGTCATCACCCACCAAATACTTTAGTTGTCTCCGGCGTGTAGCAAGATATTGAGTAGTGGGTGATTAGCTCAGCTGGGTGAGCACCTCCCTTACAAGGAGTGAGTCGGCGGTTCTATcc > 1:646899/1‑138 (MQ=25) gggTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTAGGTAGTCTCCGCCGTGTAGCAATAAATTGAGAAGAGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTGACAAGGAGGGGGTCGGCGGTGCGAGccc > 1:567165/1‑138 (MQ=37) ggTCGGCGGTTCGATCCCGTCATCACCCACCACATACGTTCGTAGTCTCAGGCGTGTAGGAAGATGAAGAGAAGTGGGTGTGTAGCTGGGATGGGAGCGCCACGCCCGAACAAGGTGGGGGACGGCGGTGCTATccccaa > 8:151510/1‑137 (MQ=255) ggggtcggTTCTATCCCTTCTACACCCACGAAATTCTTTTGTACTCTCCGCCGTTTAGCAAGAAATTTATTAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGt < 2:308223/133‑1 (MQ=17) gTCGGCGGTTCGTTGCTGTCATCAGCCACCTACTACTTATGTATTCTCCGCCTTGTAGCAAGAAATTGAGTAGTTGGTGATTAGCTCTGCTGGGTGAGCAGCTCCCTTACAAGGAGGGGGTCGGCGGTTCGTTCCCGtca < 3:992297/140‑1 (MQ=21) tCGGCGGTTCGATCCCGTCATCACCCACCACCTACTTATGTAGTCTACGCCGTGTAGCAAGAAATAGATAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTACAGTCCAAGGATGTGGTCGGCGGTTAGATCCCCtc > 2:1161444/1‑138 (MQ=25) tCGGCGGTTCGATCCCGTCATCACCCACCAACTACTGATGTAGTCTCCGCCGGGTAGCAAGATATGGAGAAGTGGGTGATTAGCTCAGCTGGTAGAGCCCCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGtcat > 5:1008656/1‑140 (MQ=25) ggcgcgtCGATCCCGTCAACACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGtcatca < 5:781416/134‑1 (MQ=255) cggTTCGATCCCGTCATCACCGACCAACTTCTTATGTAGTCTCCGCCTTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGtcatca < 2:127231/138‑1 (MQ=255) cggTTCGATCCCGTCATCACCCACCAAATACTTATGTTGTCTCAGCGGTGTAACAAGATAATGATAAGTGGTTGATTAGCACATCAGGGTGCGCACCTCCCTTACAAGGAGACGCTCGTCGCGGGGCTCCCGtcatca > 2:414031/1‑138 (MQ=255) cGATCCCGTCATCACCCACCAAATACTTATGTACTCTCAGGCGTGTAGCAAGAAAATGATAAGTGGTTGATTAGCTCAGCTGGGAGAGAACCTCCCTTACAAGGAGCTGTTCGTCCGATCGATCCCGTAATCACccacca > 7:154419/1‑140 (MQ=18) atcaCCCACCAACTACTGATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCCCCACttggggg > 2:525280/1‑133 (MQ=255) cacccaccAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGCGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACACACCACTTGATCGCCAg > 3:515020/1‑140 (MQ=255) acccaccAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTGGCCAGc > 5:83913/1‑140 (MQ=255) accaACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGCTCCCGTCATCACCCACCACTTTCTCGCCAGCTAGa > 7:486705/1‑140 (MQ=255) accaACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAGa > 7:801249/1‑140 (MQ=255) caACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGATAGa > 2:1053586/1‑138 (MQ=255) caACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGGTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAGa > 1:990012/1‑138 (MQ=255) | TTTCTTTAGAAAATGCGTTGACTCATTTTGAACTCTCCCTATAATGCGACTCCACACAGCGGGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCAACTACTTATGTAGTCTCCGCCGTGTAGCAAGAAATTGAGAAGTGGGTGATTAGCTCAGCTGGGAGAGCACCTCCCTTACAAGGAGGGGGTCGGCGGTTCGATCCCGTCATCACCCACCACTTTCTCGCCAGCTAGA > NZ_CP022686/1174134‑1174407 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |