mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 119,184 | T→G | 12.0% | F47V (TTT→GTT) | marB → | multiple antibiotic resistance protein MarB |
| RA | NZ_CP022686 | 192,380 | T→A | 7.4% | R597R (CGT→CGA) | rsxC → | electron transport complex subunit RsxC |
| RA | NZ_CP022686 | 238,279 | G→T | 9.2% | F100L (TTC→TTA) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 238,313 | T→A | 14.4% | Y89F (TAC→TTC) | sufE ← | cysteine desulfuration protein SufE |
| RA | NZ_CP022686 | 298,027 | A→C | 9.6% | F60C (TTT→TGT) | chbC ← | PTS N,N'‑diacetylchitobiose transporter subunit IIC |
| RA | NZ_CP022686 | 349,100 | A→C | 18.7% | T605P (ACG→CCG) | yeaG → | protein kinase YeaG |
| RA | NZ_CP022686 | 355,148 | T→G | 5.6% | G139G (GGT→GGG) D270A (GAC→GCC) |
yeaL → nimR ← |
DUF441 domain‑containing protein DNA‑binding transcriptional regulator NimR |
| RA | NZ_CP022686 | 360,227 | T→G | 16.0% | T35P (ACG→CCG) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 360,246 | T→G | 8.2% | E28D (GAA→GAC) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| RA | NZ_CP022686 | 372,574 | A→C | 19.4% | N275T (AAC→ACC) | sdaA → | L‑serine ammonia‑lyase |
| RA | NZ_CP022686 | 377,307 | A→C | 9.6% | K147N (AAA→AAC) | manX → | PTS mannose transporter subunit IIAB |
| RA | NZ_CP022686 | 418,374 | T→G | 10.0% | F48V (TTT→GTT) | znuB → | zinc ABC transporter permease subunit ZnuB |
| RA | NZ_CP022686 | 457,894 | Δ1 bp | 100% | pseudogene (288/997 nt) | CIW80_RS02445 ← | DUF968 domain‑containing protein |
| RA | NZ_CP022686 | 556,940 | A→T | 11.9% | intergenic (+124/‑724) | zinT → / → CIW80_RS03080 | metal‑binding protein ZinT/site‑specific integrase |
| RA | NZ_CP022686 | 560,880 | C→T | 100% | intergenic (+62/+53) | CIW80_RS03085 → / ← pilV | hypothetical protein/shufflon system plasmid conjugative transfer pilus tip adhesin PilV |
| RA | NZ_CP022686 | 599,447 | A→C | 8.2% | D991A (GAC→GCC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,295 | T→G | 17.5% | V1607G (GTC→GGC) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| RA | NZ_CP022686 | 601,302 | T→G | 14.0% | R1609R (CGT→CGG) | irp1 → | yersiniabactin polyketide synthase HMWP1 |
| MC JC | NZ_CP022686 | 628,478 | Δ1,286 bp | 100% | [clbP] | [clbP] | |
| RA | NZ_CP022686 | 693,001 | A→C | 10.6% | N114T (AAC→ACC) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 693,021 | A→C | 9.2% | T121P (ACG→CCG) | CIW80_RS03550 → | YaiO family outer membrane beta‑barrel protein |
| RA | NZ_CP022686 | 756,115 | A→G | 100% | G181G (GGT→GGC) | galE ← | UDP‑glucose 4‑epimerase GalE |
| RA | NZ_CP022686 | 794,460 | C→T | 100% | A568V (GCG→GTG) | dgcE → | diguanylate cyclase |
| RA | NZ_CP022686 | 829,441 | C→A | 22.5% | intergenic (‑30/+197) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,448 | T→A | 11.5% | intergenic (‑37/+190) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,452 | G→T | 20.2% | intergenic (‑41/+186) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 829,467 | C→A | 19.9% | intergenic (‑56/+171) | gatY ← / ← fbaB | tagatose‑bisphosphate aldolase subunit GatY/class I fructose‑bisphosphate aldolase |
| RA | NZ_CP022686 | 837,555 | T→G | 17.1% | intergenic (‑128/+95) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 837,561 | G→T | 14.0% | intergenic (‑134/+89) | thiM ← / ← rcnR | hydroxyethylthiazole kinase/Ni(II)/Co(II)‑binding transcriptional repressor RcnR |
| RA | NZ_CP022686 | 881,739 | A→C | 17.2% | intergenic (+254/+133) | yohP → / ← dusC | protein YohP/tRNA dihydrouridine(16) synthase DusC |
| RA | NZ_CP022686 | 917,427:1 | +TT | 100% | intergenic (+130/‑91) | yeiP → / → yeiQ | elongation factor P‑like protein YeiP/mannitol dehydrogenase family protein |
| RA | NZ_CP022686 | 948,080 | G→T | 14.7% | intergenic (+149/‑108) | CIW80_RS04855 → / → CIW80_RS04860 | terminase small subunit/hypothetical protein |
| RA | NZ_CP022686 | 957,112 | T→G | 17.0% | T89P (ACC→CCC) | ccmA ← | cytochrome c biogenesis heme‑transporting ATPase CcmA |
| RA | NZ_CP022686 | 1,005,073 | A→C | 9.9% | E376D (GAA→GAC) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,005,085 | C→A | 14.1% | T380T (ACC→ACA) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,005,094 | G→C | 10.5% | E383D (GAG→GAC) | nrdA → | ribonucleoside‑diphosphate reductase subunit alpha |
| RA | NZ_CP022686 | 1,011,397 | T→A | 9.2% | intergenic (‑246/‑27) | glpT ← / → glpA | glycerol‑3‑phosphate transporter/anaerobic glycerol‑3‑phosphate dehydrogenase subunit A |
| RA | NZ_CP022686 | 1,034,493 | T→G | 8.4% | T26P (ACC→CCC) | menC ← | o‑succinylbenzoate synthase |
| RA | NZ_CP022686 | 1,040,909 | A→C | 9.9% | E232D (GAA→GAC) | rbn → | ribonuclease BN |
| RA | NZ_CP022686 | 1,047,883 | T→G | 10.6% | intergenic (‑113/+51) | nuoM ← / ← nuoL | NADH‑quinone oxidoreductase subunit M/NADH‑quinone oxidoreductase subunit L |
| RA | NZ_CP022686 | 1,065,997 | A→C | 14.2% | A30A (GCT→GCG) | yfbS ← | SLC13 family permease |
| RA | NZ_CP022686 | 1,195,277 | T→G | 5.5% | D139A (GAC→GCC) | cysP ← | thiosulfate/sulfate ABC transporter substrate‑binding protein CysP |
| RA | NZ_CP022686 | 1,213,479 | T→G | 15.1% | G420G (GGA→GGC) | eutE ← | aldehyde dehydrogenase EutE |
| RA | NZ_CP022686 | 1,360,709 | T→G | 15.1% | intergenic (‑44/+280) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,724 | G→T | 12.6% | intergenic (‑59/+265) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,750 | G→T | 7.7% | intergenic (‑85/+239) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,360,756 | C→A | 9.9% | intergenic (‑91/+233) | kgtP ← / ← rrf | alpha‑ketoglutarate permease/5S ribosomal RNA |
| RA | NZ_CP022686 | 1,370,559 | T→G | 12.1% | K98N (AAA→AAC) | rluD ← | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD |
| RA | NZ_CP022686 | 1,371,081 | C→A | 14.9% | P32Q (CCA→CAA) | bamD → | outer membrane protein assembly factor BamD |
| RA | NZ_CP022686 | 1,479,607 | A→C | 10.0% | intergenic (‑16/+177) | ftsB ← / ← ygbE | cell division protein FtsB/DUF3561 family protein |
| RA | NZ_CP022686 | 1,500,012 | C→A | 10.0% | P257T (CCG→ACG) | ygcE → | FGGY‑family carbohydrate kinase |
| RA | NZ_CP022686 | 1,504,299 | G→T | 11.5% | V246F (GTT→TTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,504,361 | G→T | 15.6% | V266V (GTG→GTT) | CIW80_RS07520 → | YgcG family protein |
| RA | NZ_CP022686 | 1,558,395 | A→C | 10.2% | K464N (AAA→AAC) | vgrG → | type VI secretion system Vgr family protein |
| RA | NZ_CP022686 | 1,564,569 | A→C | 10.0% | K190N (AAA→AAC) | CIW80_RS07780 → | ImcF‑related family protein |
| RA | NZ_CP022686 | 1,597,235 | T→G | 10.2% | N19H (AAC→CAC) | thyA ← | thymidylate synthase |
| RA | NZ_CP022686 | 1,604,984 | A→C | 11.0% | V338G (GTC→GGC) | lplT ← | lysophospholipid transporter LplT |
| RA | NZ_CP022686 | 1,674,244 | T→G | 16.2% | T182P (ACC→CCC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,674,248 | T→G | 13.1% | Q180H (CAA→CAC) | ygfB ← | UPF0149 family protein YgfB |
| RA | NZ_CP022686 | 1,796,792 | A→C | 7.0% | intergenic (+5/‑90) | agn43 → / → CIW80_RS08945 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 1,911,580 | G→T | 14.3% | S231R (AGC→AGA) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 1,911,602 | T→G | 10.8% | N224T (AAC→ACC) | CIW80_RS09520 ← | MurR/RpiR family transcriptional regulator |
| RA | NZ_CP022686 | 2,016,225 | T→G | 9.6% | noncoding (49/377 nt) | rnpB ← | RNase P RNA component class A |
| RA | NZ_CP022686 | 2,046,671 | A→C | 5.7% | V381G (GTC→GGC) | mtr ← | tryptophan permease |
| RA | NZ_CP022686 | 2,076,554 | T→G | 12.8% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| RA | NZ_CP022686 | 2,090,800 | T→G | 8.3% | S166A (TCG→GCG) | yrbL → | PhoP regulatory network protein YrbL |
| RA | NZ_CP022686 | 2,110,472 | T→G | 7.6% | K7N (AAA→AAC) | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,110,490 | C→A | 11.6% | M1M (ATG→ATT) † | rplM ← | 50S ribosomal protein L13 |
| RA | NZ_CP022686 | 2,123,234 | T→A | 6.5% | Y210F (TAT→TTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,123,241 | A→C | 5.9% | F208V (TTT→GTT) | tldD ← | metalloprotease TldD |
| RA | NZ_CP022686 | 2,148,103 | T→G | 22.6% | L122R (CTT→CGT) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,136 | T→G | 9.8% | V133G (GTT→GGT) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,139 | C→G | 11.5% | A134G (GCG→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,148,149 | T→G | 9.6% | G137G (GGT→GGG) | panF → | sodium/pantothenate symporter |
| RA | NZ_CP022686 | 2,159,673 | C→A | 14.6% | A167E (GCA→GAA) | CIW80_RS10780 → | amino acid ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,185,075 | A→C | 8.0% | V46G (GTT→GGT) | rpsE ← | 30S ribosomal protein S5 |
| RA | NZ_CP022686 | 2,214,419 | T→C | 100% | K43R (AAA→AGA) | rpsL ← | 30S ribosomal protein S12 |
| RA | NZ_CP022686 | 2,226,139 | A→C | 7.4% | D9A (GAC→GCC) | crp → | cAMP‑activated global transcriptional regulator CRP |
| RA | NZ_CP022686 | 2,250,454 | A→C | 7.1% | S40A (TCG→GCG) | dam ← | adenine‑specific DNA‑methyltransferase |
| RA | NZ_CP022686 | 2,272,831 | G→T | 7.0% | intergenic (+73/‑24) | greB → / → yhgF | transcription elongation factor GreB/Tex family protein |
| RA | NZ_CP022686 | 2,320,775 | C→T | 100% | G274S (GGC→AGC) | CIW80_RS11675 ← | DNA‑processing protein DprA |
| RA | NZ_CP022686 | 2,357,322 | T→A | 13.0% | S36R (AGT→AGA) | dcrB → | phage sensitivity protein DcrB |
| RA | NZ_CP022686 | 2,361,489 | T→G | 11.3% | V188G (GTT→GGT) | nikA → | nickel ABC transporter substrate‑binding protein |
| RA | NZ_CP022686 | 2,380,585 | T→G | 5.2% | G69G (GGT→GGG) | pitA → | inorganic phosphate transporter PitA |
| RA | NZ_CP022686 | 2,397,400 | C→A | 9.9% | S19* (TCA→TAA) | chuT → | heme ABC transporter substrate‑binding protein ChuT |
| RA | NZ_CP022686 | 2,408,861 | Δ1 bp | 100% | pseudogene (1097/3115 nt) | mdtF → | multidrug efflux pump RND permease MdtF |
| RA | NZ_CP022686 | 2,448,935 | C→A | 7.7% | F187L (TTC→TTA) | yhjV → | aromatic amino acid transport family protein |
| RA | NZ_CP022686 | 2,460,576 | C→A | 12.7% | M1M (ATG→ATT) † | yhjY ← | autotransporter outer membrane beta‑barrel domain‑containing protein |
| RA | NZ_CP022686 | 2,470,422 | T→G | 9.5% | K72N (AAA→AAC) | glyS ← | glycine‑‑tRNA ligase subunit beta |
| JC | NZ_CP022686 | 2,590,563 | +TTGG | 100% | coding (109/153 nt) | CIW80_RS26455 → | hypothetical protein |
| RA | NZ_CP022686 | 2,617,885 | T→G | 7.6% | K190N (AAA→AAC) | ilvB ← | acetolactate synthase large subunit |
| RA | NZ_CP022686 | 2,743,563 | T→G | 12.1% | noncoding (65/87 nt) | CIW80_RS13750 → | tRNA‑Leu |
| RA | NZ_CP022686 | 2,758,128 | A→C | 6.4% | K40N (AAA→AAC) | yifL → | lipoprotein |
| RA | NZ_CP022686 | 2,769,196 | A→C | 14.6% | F47C (TTT→TGT) | rarD ← | EamA family transporter RarD |
| RA | NZ_CP022686 | 2,820,583 | A→C | 5.7% | T350P (ACG→CCG) | trkH → | Trk system potassium transporter TrkH |
| RA | NZ_CP022686 | 2,821,644 | A→C | 7.3% | intergenic (+100/‑278) | hemG → / → CIW80_RS14130 | menaquinone‑dependent protoporphyrinogen IX dehydrogenase/16S ribosomal RNA |
| RA | NZ_CP022686 | 2,834,886 | A→C | 10.9% | K597N (AAA→AAC) | polA → | DNA polymerase I |
| RA | NZ_CP022686 | 2,868,740 | T→G | 19.3% | Q22P (CAG→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,868,742 | A→C | 13.8% | P21P (CCT→CCG) | fdoH ← | formate dehydrogenase O subunit beta |
| RA | NZ_CP022686 | 2,904,852 | T→G | 8.7% | T239P (ACG→CCG) | ftsN ← | cell division protein FtsN |
| RA | NZ_CP022686 | 2,981,612 | A→C | 8.1% | T567P (ACC→CCC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | NZ_CP022686 | 2,989,627 | T→G | 10.6% | Q39H (CAA→CAC) | thiC ← | phosphomethylpyrimidine synthase ThiC |
| RA | NZ_CP022686 | 3,184,651 | A→C | 6.8% | intergenic (‑98/+18) | cutA ← / ← dcuA | divalent cation tolerance protein CutA/anaerobic C4‑dicarboxylate transporter DcuA |
| JC | NZ_CP022686 | 3,196,873 | +GCGTAATCGGTT | 100% | coding (944/1122 nt) | ampC ← | BlaEC family class C beta‑lactamase |
| RA | NZ_CP022686 | 3,200,595 | A→C | 8.2% | V199G (GTT→GGT) | frdA ← | fumarate reductase (quinol) flavoprotein subunit |
| RA | NZ_CP022686 | 3,218,260 | T→G | 6.8% | L233R (CTT→CGT) | miaA → | tRNA (adenosine(37)‑N6)‑dimethylallyltransferase MiaA |
| RA | NZ_CP022686 | 3,387,116 | A→C | 9.7% | F86V (TTT→GTT) | sgcA ← | SgcA family PTS sugar transporter subunit IIA |
| RA | NZ_CP022686 | 3,424,795 | A→C | 100% | intergenic (‑41/+27) | yjiJ ← / ← yjiK | MFS transporter/YjiK family protein |
| RA | NZ_CP022686 | 3,444,704 | T→G | 12.2% | T530P (ACC→CCC) | btsT ← | pyruvate/proton symporter BtsT |
| RA | NZ_CP022686 | 3,461,215 | A→T | 17.0% | intergenic (‑24/+11) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,218 | G→C | 12.2% | intergenic (‑27/+8) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,221 | T→G | 14.7% | intergenic (‑30/+5) | CIW80_RS17335 ← / ← CIW80_RS17340 | tRNA‑Leu/tRNA‑Leu |
| RA | NZ_CP022686 | 3,461,229 | T→G | 24.5% | noncoding (84/87 nt) | CIW80_RS17340 ← | tRNA‑Leu |
| RA | NZ_CP022686 | 3,468,357 | A→C | 9.5% | T300P (ACG→CCG) | yjjU → | patatin family protein |
| RA | NZ_CP022686 | 3,516,058 | T→G | 10.2% | V207V (GTT→GTG) | nhaA → | Na+/H+ antiporter NhaA |
| MC JC | NZ_CP022686 | 3,559,837 | Δ2,343 bp | 100% | coding (10‑2352/2352 nt) | polB ← | DNA polymerase II |
| RA | NZ_CP022686 | 3,598,457 | T→G | 9.0% | V228G (GTG→GGG) | murC → | UDP‑N‑acetylmuramate‑‑L‑alanine ligase |
| RA | NZ_CP022686 | 3,652,090 | T→G | 9.8% | intergenic (‑99/+13) | panB ← / ← CIW80_RS18255 | 3‑methyl‑2‑oxobutanoate hydroxymethyltransferase/fimbrial‑like adhesin |
| RA | NZ_CP022686 | 3,656,188 | A→G | 100% | S549P (TCC→CCC) | htrE ← | outer membrane usher protein |
| RA | NZ_CP022686 | 3,661,518 | C→A | 14.0% | C9F (TGC→TTC) | pcnB ← | polynucleotide adenylyltransferase PcnB |
| RA | NZ_CP022686 | 3,714,342 | T→G | 8.5% | L275V (TTG→GTG) | tilS → | tRNA lysidine(34) synthetase TilS |
| RA | NZ_CP022686 | 3,734,367 | T→G | 24.3% | F225V (TTT→GTT) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,734,380 | T→G | 17.6% | L229R (CTC→CGC) | yafD → | endonuclease/exonuclease/phosphatase family protein |
| RA | NZ_CP022686 | 3,792,805 | A→G | 100% | Y421C (TAC→TGC) | fucP → | L‑fucose:H+ symporter permease |
| MC JC | NZ_CP022686 | 3,844,426 | Δ1,036 bp | 100% | coding (2‑1037/1056 nt) | dinB → | DNA polymerase IV |
| RA | NZ_CP022686 | 3,868,864 | A→C | 8.4% | S377A (TCG→GCG) | ecpC ← | fimbrial usher EcpC |
| RA | NZ_CP022686 | 3,897,759 | A→T | 8.7% | pseudogene (117/1083 nt) | hyxB ← | outer membrane autotransporter HyxB |
| RA | NZ_CP022686 | 3,910,255 | G→T | 6.4% | F69L (TTC→TTA) | yahB ← | LysR substrate‑binding domain‑containing protein |
| RA | NZ_CP022686 | 3,910,616 | C→A | 10.5% | G145G (GGG→GGT) | yahC ← | DUF1097 domain‑containing protein |
| RA | NZ_CP022686 | 3,925,309 | G→T | 9.4% | E163* (GAA→TAA) | prpC → | 2‑methylcitrate synthase |
| RA | NZ_CP022686 | 3,935,324 | T→G | 8.1% | N705T (AAC→ACC) | lacZ ← | beta‑galactosidase |
| RA | NZ_CP022686 | 3,940,707 | A→C | 12.3% | F314V (TTT→GTT) | frmA ← | S‑(hydroxymethyl)glutathione dehydrogenase |
| RA | NZ_CP022686 | 3,949,969 | T→G | 10.4% | D141A (GAC→GCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,950,011 | T→G | 6.7% | H127P (CAC→CCC) | hemB ← | porphobilinogen synthase |
| RA | NZ_CP022686 | 3,981,933 | T→G | 11.5% | intergenic (+70/‑86) | proY → / → malZ | proline‑specific permease ProY/maltodextrin glucosidase |
| RA | NZ_CP022686 | 4,014,238 | C→G | 13.9% | intergenic (+84/‑260) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,014,242 | A→T | 14.3% | intergenic (+88/‑256) | bolA → / → tig | transcriptional regulator BolA/trigger factor |
| RA | NZ_CP022686 | 4,019,028 | A→C | 9.4% | D259A (GAC→GCC) | lon → | endopeptidase La |
| RA | NZ_CP022686 | 4,032,237 | A→C | 6.6% | D88A (GAC→GCC) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,032,257 | G→T | 10.2% | E95* (GAA→TAA) | glnK → | P‑II family nitrogen regulator |
| RA | NZ_CP022686 | 4,079,344 | C→A | 12.3% | A165S (GCG→TCG) | ybbO ← | NADP(+)‑dependent aldehyde reductase |
| RA | NZ_CP022686 | 4,196,276 | T→G | 17.5% | E15D (GAA→GAC) | holA ← | DNA polymerase III subunit delta |
| RA | NZ_CP022686 | 4,214,439 | G→C | 8.9% | intergenic (‑12/+23) | CIW80_RS21095 ← / ← CIW80_RS21100 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,214,457 | G→T | 11.1% | intergenic (‑30/+5) | CIW80_RS21095 ← / ← CIW80_RS21100 | tRNA‑Gln/tRNA‑Gln |
| RA | NZ_CP022686 | 4,270,799 | A→C | 9.0% | T482P (ACG→CCG) | sucA → | 2‑oxoglutarate dehydrogenase E1 component |
| RA | NZ_CP022686 | 4,287,456 | T→G | 11.7% | noncoding (47/76 nt) | CIW80_RS21475 → | tRNA‑Val |
| RA | NZ_CP022686 | 4,291,808 | T→G | 8.1% | G178G (GGT→GGG) | aroG → | 3‑deoxy‑7‑phosphoheptulonate synthase AroG |
| RA | NZ_CP022686 | 4,331,905 | A→C | 10.5% | G300G (GGT→GGG) | ybhR ← | ABC transporter permease |
| RA | NZ_CP022686 | 4,338,911 | A→C | 10.3% | K448N (AAA→AAC) | rhlE → | ATP‑dependent RNA helicase RhlE |
| RA | NZ_CP022686 | 4,427,623 | G→T | 7.5% | intergenic (+88/‑11) | yljB → / → clpS | protein YljB/ATP‑dependent Clp protease adapter ClpS |
| RA | NZ_CP022686 | 4,632,182 | T→G | 8.5% | R276R (CGT→CGG) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,632,186 | G→T | 5.1% | G278C (GGC→TGC) | mchF → | microcin export transporter peptidase/ATP‑binding subunit MchF |
| RA | NZ_CP022686 | 4,642,951 | A→C | 8.8% | N732T (AAC→ACC) | sfaF → | S/F1C fimbrial usher SfaF/FocD |
| RA | NZ_CP022686 | 4,661,560 | C→A | 6.8% | intergenic (+5/‑178) | CIW80_RS26570 → / → CIW80_RS23365 | hypothetical protein/tRNA‑Arg |
| RA | NZ_CP022686 | 4,678,041 | A→C | 21.4% | intergenic (+39/‑82) | agn43 → / → CIW80_RS23450 | autotransporter adhesin Ag43/hypothetical protein |
| RA | NZ_CP022686 | 4,712,764 | G→C | 14.3% | A52G (GCT→GGT) | yceB ← | lipoprotein |
| RA | NZ_CP022686 | 4,757,527 | T→G | 8.5% | G91G (GGT→GGG) | ycfJ → | glycine zipper 2TM domain‑containing protein |
| RA | NZ_CP022686 | 4,764,880 | T→G | 12.8% | intergenic (‑60/‑201) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,764,904 | G→T | 13.7% | intergenic (‑84/‑177) | ycfT ← / → lolC | acyltransferase family protein/lipoprotein‑releasing ABC transporter permease subunit LolC |
| RA | NZ_CP022686 | 4,815,879 | T→G | 11.4% | F23V (TTC→GTC) | CIW80_RS24305 → | C40 family peptidase |
| MC JC | NZ_CP022686 | 4,844,868 | Δ1,662 bp | 100% | [umuD]–[umuC] | [umuD], [umuC] | |
| RA | NZ_CP022686 | 4,870,912 | Δ1 bp | 100% | intergenic (‑108/‑120) | dhaK ← / → dhaR | dihydroxyacetone kinase subunit DhaK/dihydroxyacetone kinase operon transcriptional regulator DhaR |
| RA | NZ_CP022686 | 4,916,128 | A→C | 6.7% | intergenic (+255/+30) | tdk → / ← CIW80_RS24885 | thymidine kinase/IS4 family transposase |
| RA | NZ_CP022686 | 4,919,017 | T→G | 9.3% | E330D (GAA→GAC) | adhE ← | bifunctional acetaldehyde‑CoA/alcohol dehydrogenase |
| RA | NZ_CP022686 | 5,043,855 | T→A | 14.6% | G1162G (GGT→GGA) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | NZ_CP022686 | 5,043,951 | T→C | 6.9% | G1194G (GGT→GGC) | CIW80_RS25525 → | EntS/YbdA MFS transporter |
| RA | pMut‑Ompa‑D5‑IL2wt‑His6 | 2,031 | G→A | 100% | intergenic (‑235/‑1500) | putative rom (RNA I inhibition modulator protein) ← / → ompA | –/– |
| JC | pMut‑Ompa‑D5‑IL2wt‑His6 | 3,595 | Δ15 bp | 100% | [IL2wt no signal] | [IL2wt no signal] | |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NZ_MW240712 | 302–2618 | 3082–2957 | 340–2781 | 10495 [10394] | [10202] 10542 | [JNG15_RS00005]–mobA | [JNG15_RS00005],JNG15_RS00010,JNG15_RS00015,mobA |
| * | * | ÷ | pMut‑Ompa‑D5‑IL2wt‑His6 | 4746–4866 | 5478–5074 | 209–733 | 5080 [4950] | [0] NA | [putative HTH domain protein] | [putative HTH domain protein] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP022686 | 262466 = | 0 (0.000) | 200 (1.010) | 65/250 | NT | 100% | coding (320/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1524130 | NA (NA) | intergenic (+8/+232) | CIW80_RS07590/syd | IS3‑like element ISEc52 family transposase/SecY‑interacting protein | |||||
| * | ? | NZ_CP022686 | = 262468 | 0 (0.000) | 205 (1.030) | 66/250 | NT | 100% | coding (322/1647 nt) | fadK | medium‑chain fatty‑acid‑‑CoA ligase |
| ? | NZ_CP022686 | = 1761697 | NA (NA) | intergenic (‑72/‑70) | CIW80_RS08710/CIW80_RS08720 | IS3‑like element ISEc52 family transposase/IS3‑like element IS600 family transposase | |||||