| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NZ_CP022686 | 2,076,554 | T→G | 11.5% | intergenic (+24/‑209) | ispB → / → sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP022686 | 2,076,554 | 0 | T | G | 11.5% | 232.4 / 3.9 | 166 | intergenic (+24/‑209) | ispB/sfsB | octaprenyl diphosphate synthase/DNA‑binding transcriptional regulator SfsB |
| Reads supporting (aligned to +/- strand): ref base T (23/119); new base G (15/9); total (38/128) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.12e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 172 total aligned reads displayed.
CGTGCCGAGGAAGAAGCAGACAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAGGAGT > NZ_CP022686/2076417‑2076693 | cGTGCCGAGGAAGAAGCAGACAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCCGTgg > 1:710374/1‑139 (MQ=255) cGAGGAAGAAGCAGTCAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCggg < 8:405898/140‑1 (MQ=255) cGAGGAAGAAGCAGCCAAAGCCATCGCAGCGTTACAGGGGCTCCCGGACACCCCGTGGAGAGAAGCACTCGGCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCggg < 4:579445/140‑1 (MQ=255) cGAGGAAGAAGCAGACAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCggg > 2:883870/1‑140 (MQ=255) aCAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTaaa < 1:37094/140‑1 (MQ=255) aCAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCACGGGGGGGGATGAGTGCAGTaaa > 6:435894/1‑140 (MQ=255) aaaGCCATCGCAGCGTTACAGGTGCGCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAAtt < 5:246947/140‑1 (MQ=255) aGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCCGGGGGCGGGGGGATTGCCGTaaaatac > 7:790235/1‑136 (MQ=255) aTCGCAGCGTTACAGGTGCTCCCTGACACCCCTTGGAGAGAAGAACTCGGCGGCCTCGCGCACATCGCTGTTCAACGCTATCGTTAAACCCCTCCCCTCATCCCCCGCAGTGCGCGGGATGATTCCAGTAAATTCCATaa < 8:470180/140‑1 (MQ=255) aTCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATaa < 4:664097/140‑1 (MQ=255) aTCGCAGCGTTACAGGGGCTCCCGGACCCCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACTTCGCTGTTCACCGCGATCGTTAATCCCCCCCCCACCGCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATaa < 1:960373/140‑1 (MQ=255) cGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCACCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCATTGCGCCGGATTATTGCAGGATATTAAATaaaa > 7:245517/1‑140 (MQ=255) cGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCAGTGCGCGGGCTGATTACAGTAAATTACATaaaa > 3:693086/1‑140 (MQ=255) cGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCAGTGCGCGGGATGATTCCAGTTAATTCAATaaaa > 8:487700/1‑140 (MQ=255) gCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCCCATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCCGTGCGCGGGAGGCTTGCAGGAAATTCCaaaaaaaaat > 7:886197/1‑136 (MQ=255) cGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATGCCCCGCGGGGCGGGGGGTGGTTACCGGAAATTCCATAAAATAAtt > 3:137613/1‑140 (MQ=255) cGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCCATGGGCGGGGTGATTCAAGTAAATTCCCAaaaaaaatt > 7:3705/1‑135 (MQ=255) tACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGGCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCAACCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTAtt < 3:642400/140‑1 (MQ=255) accggggCTCCCGGACACCCCGTGGAGAGAAGCACTCGGCGGCCTCGCGCACTTCGCTTTTCAACTCTATCTTTAATAACCTCCCCTATTCCCTCGATTTGAGGGTTATGATTCCAGTAAATTCCATAAAAAACTTATTc < 8:800997/134‑1 (MQ=255) agttGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAg < 8:453975/137‑1 (MQ=255) gCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCCGACGGGGGGGGGTGATTGCACTATATTCAAAAAAATAAATATTGAGctgt > 1:868364/1‑138 (MQ=255) cTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCCGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCCCGGCGCGGGGTGGTTCCAGTAAATTCCATAAAATACTTATTCAGCTCta > 2:183831/1‑140 (MQ=255) tCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCAACCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCtat < 1:780606/140‑1 (MQ=255) cGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGAGCGTTAATCCCCTCCCCTCATCCCGCGCAGGGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAAc < 7:684986/140‑1 (MQ=255) cccccGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTg < 8:752073/139‑1 (MQ=255) cccccGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGGTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTg < 8:679057/139‑1 (MQ=255) acCCCTTGGAGAGAAGCACTCGTGGGCCTCGCGCACATCGCTGTTCATCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTg < 1:129276/140‑1 (MQ=255) ccGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGGCGGGGGCGGGGTGGTTACAGTATATTACATAAAATACTTATTAAGCTGTATAAATACTGaaa > 3:390134/1‑140 (MQ=255) cGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCCGGGGGCGGGGTGATTGCCGGAAATTACATAAAATAAATATTAAGCGCGATAAAACCTGaaaa > 6:309129/1‑140 (MQ=255) cGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGGGCGGGATGATTCCAGGAAATTCCATAAAATAATTATTAAGCTCTATAACACCTGaaaa > 4:519776/1‑140 (MQ=255) ggAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCGCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACt < 4:749054/140‑1 (MQ=255) gagagaCGCACTCGTCGGCCTCGCGCACATCGCTGTGCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTg < 2:175084/140‑1 (MQ=255) agagaAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTgg < 4:250586/140‑1 (MQ=255) gagaAGCACTCGTCGGCCTCGCGCACATCGCTGTTCACCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTggg < 7:99401/140‑1 (MQ=255) gagaAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTggg < 6:440885/140‑1 (MQ=255) gagaAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTggg < 6:265481/140‑1 (MQ=255) gagaAGCACTCGTCGGCCTCGCGCACATCGCGGTTGAACGCGATGTTTAATCCCCTCCCCTCATCACGCGCCGGGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTggg < 2:784193/140‑1 (MQ=255) gaAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATTAATATTCAGCTCTATAACTCCAGAAAAAAGGGGcg > 8:141887/1‑139 (MQ=255) gCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCtgtg < 6:570567/140‑1 (MQ=255) gCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCtgtg < 3:244705/140‑1 (MQ=255) gCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCtgtg < 7:234153/140‑1 (MQ=255) gCACGCGTCGGCCTCGCGCACAGCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCtgtg < 1:480424/140‑1 (MQ=255) ccACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAAACCCCGCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCtgtg < 5:447405/139‑1 (MQ=255) tcgtcgGCCGCTCGCACAGCGCTGGTCAACGAGATCGTTAATCCCGTCCCCTACTCCCGGGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCGCTATAACTCCTGATAAACTGGGCTGTGTATc < 8:320783/140‑1 (MQ=255) gtcgGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTACAGTAAATTGAATAAAATACTTATTGAGCGCGATAAATGCTGAAAAACTGGGCTgtgtttgtt > 7:515255/1‑135 (MQ=255) ggCCTCGCGCACTTCGTTGTTCTAGGCGTTCGTAATTCCCCACCCCTCATCCCGCGCATTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTtat < 1:462708/140‑1 (MQ=255) ggCCTCGCGCACATCGCTGATCAACGCGATCGTTACTCCCCTCCCCGCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTtat < 8:228216/140‑1 (MQ=255) gCCTCGCGCACATCGCTGTGCACCGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTtata < 2:324046/140‑1 (MQ=255) acaTCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGaa < 6:884175/140‑1 (MQ=255) aTCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCCCGCCGGGCGCGGGATGGTTGCAGTAAATTACATAAAATACTTATTAAGCTCTATAACACCGGAAAAACTGGGCGGTGTATATTTATTTATTATGAatt > 4:736745/1‑139 (MQ=255) gCTGTTCAACGCGATCGTTAATCCCCGCCCCTCAACCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTc < 5:876844/140‑1 (MQ=255) gTTCATCGCGATCGTTAAGACACTCCCCTCCACCCGCGCAGTGCGCGGGAGGATTACATTAAATTCCATAAAATACTTATTCAGCGCTATCACTACTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTcaca < 6:678860/140‑1 (MQ=255) gTTCACCGCGATCGTTAATCCCCTCCCCTCCTCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAACATACTTATTCAGCTCTATAACTCCTGAAATACTGGGCTGTGTATCTTTATATATTCTGAATATTcaca < 2:228204/140‑1 (MQ=255) gTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTcaca < 7:154107/140‑1 (MQ=255) gTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTcaca < 2:670476/140‑1 (MQ=255) gTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTcaca < 2:639997/140‑1 (MQ=255) ttCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCacac < 3:4092/140‑1 (MQ=255) cgcgATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTTAAGTAAATTCCATAAAATACATTTTAATCTCTATAACACCTGAAAAACTGGGGTGTGTTTATTTTTTTATTGAGAATATTTACACTAttt > 8:722654/1‑140 (MQ=255) cgATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTAc < 5:474080/140‑1 (MQ=255) tCGTTAATCCCCTCCCCTCATCCCGCGCAGGGCGCGGGATGATTCCAGTAAATTACATAAAATAATTATTCAGCAATATAAATACTGAAAAACTGGGCTGTTTATATTTATATATTATGAATATTAACACTCTTTACAgg > 2:613695/1‑140 (MQ=255) cGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGa < 1:160714/140‑1 (MQ=255) cGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGa < 2:710374/140‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGaa < 5:99649/140‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGaa < 2:358122/140‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGaa < 5:140167/140‑1 (MQ=255) gTTAATCCCCTCCCCTCATCCCGCGCAGTGAGCGGGATGATTCCAGTAAAATCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGaa < 6:71797/140‑1 (MQ=255) cccacccctcATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTa < 7:49244/140‑1 (MQ=255) cctcccctcATCCCGCGCAGTGCGCGGGTGGAGTCAAGTTAATTCCCTAAAATACTTTTTGAGCTCTATAAATACAGAAAAACGGGGCGGTGTGTCTTTATTTTGTGTGAATATTAACACTCGTTAAAGGAACTTTTTag > 8:369268/1‑140 (MQ=255) cctcccctcATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTag < 6:693954/140‑1 (MQ=255) tcccctcATCCCGCGCAGTGCGCGGGATGTTTGCAGTAAATTCCATAAAATACTTTTTAAGCTGTATAACTCCTGTAAAACTGGGGTGTGGATGTTTTTTTATTATGAATATTAACACGCTTTAAAGGATCTTTTTtgag > 6:796313/1‑140 (MQ=255) tcccctcATCCCGCGCAGTGCGCGGGAGGAGTCCAGTAAATTCCATAAAATACTTATTAAGCTCTATAACTCCCGAAAAACAGGGCTGTGTATCTTTATTTATTCTGAATATTAAAAATCTTTACAGGAACTTTTTagag > 8:508995/1‑140 (MQ=255) cATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAg < 4:390134/140‑1 (MQ=255) aTCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAgg < 7:487700/140‑1 (MQ=255) aTCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAgg < 3:892157/140‑1 (MQ=255) cccGCGCCGTGCGCGGGTTGATTCCAGTAAATTACATAAAATAATTATTAAGCTCTATAACTCCTGAAAAACAGGGCTGTGTATATTTATATATTATTAATATTAACACTCTTTACAGGAAATTTTTATAGCAATAggac > 2:130776/1‑138 (MQ=255) cccGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGcc < 4:693086/140‑1 (MQ=255) cccGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGcc < 4:192206/140‑1 (MQ=255) cccGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGcc < 2:462947/140‑1 (MQ=255) cgggcAGGGCGCGGGATGATTCCAGTAAAATCCATAAAATACTTATTAAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACATGAACTTTTTAGAGCAATAGACCAt < 1:583363/137‑1 (MQ=255) cgctCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 6:668679/140‑1 (MQ=255) cgcgCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 2:86886/140‑1 (MQ=255) cgcgCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 2:868364/140‑1 (MQ=255) cgcgCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 1:651583/140‑1 (MQ=255) cgcgCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 3:528362/140‑1 (MQ=255) cgcgCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCGCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 6:809335/140‑1 (MQ=255) cgcgCAGTGCGCGGGATGATTCCAGTAAATTACATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCAt < 2:553954/140‑1 (MQ=255) cgcTGTGCGCGGGTTGGTTACAGTAAATTCCATAAAATACTTATTGAGCTCGATAACTCCTGAAAAACGGGGGTGTGTATCTTTATATATTCGGAATATTAACACTCTTTACAGGAACTTTTTAGAGCAATATGcccacc > 2:799247/1‑136 (MQ=255) cgcAGTTCGCGGGATGATTACAGTAAATTCCATAAAATAATTATTAAACTATAAAACTACTGAAAAAAATGGATGTTTATGTTTTTATATTATGAATATTAAAAATATTTAAAAGAACTTTTTAAAGCAATATTCCAtaa > 2:286336/1‑138 (MQ=255) gcAGTGCGCGGGATGATTCCAGTATATTCCATAAAATACTTATTCTGCTCTATAACTCCTTAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 7:659134/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 5:553579/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 4:160088/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 7:70568/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 5:309129/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 5:267272/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 4:370216/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 1:445356/140‑1 (MQ=255) gcAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAg < 3:200293/140‑1 (MQ=255) ccattGCGAGGGATGATTCAAGTAAATTCCATAAAATACATATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCAAACTCTTTACATGAACTTTTTAGAGCAATAGGACATCAg < 5:515809/136‑1 (MQ=255) tGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAGGAGt > 1:81597/1‑140 (MQ=255) tGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAGGAGt > 3:487849/1‑140 (MQ=255) | CGTGCCGAGGAAGAAGCAGACAAAGCCATCGCAGCGTTACAGGTGCTCCCGGACACCCCGTGGAGAGAAGCACTCGTCGGCCTCGCGCACATCGCTGTTCAACGCGATCGTTAATCCCCTCCCCTCATCCCGCGCAGTGCGCGGGATGATTCCAGTAAATTCCATAAAATACTTATTCAGCTCTATAACTCCTGAAAAACTGGGCTGTGTATCTTTATATATTCTGAATATTCACACTCTTTACAGGAACTTTTTAGAGCAATAGGCCATCAGGAGT > NZ_CP022686/2076417‑2076693 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |