mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 195,559 | C→A | 23.0% | T355T (ACC→ACA) | PP_0168 → | putative surface adhesion protein |
| RA | 195,628 | C→T | 10.5% | D378D (GAC→GAT) | PP_0168 → | putative surface adhesion protein |
| RA | 195,629 | A→G | 10.7% | T379A (ACC→GCC) | PP_0168 → | putative surface adhesion protein |
| RA | 195,634 | C→T | 32.5% | T380T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 196,306 | T→C | 28.4% | N604N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,327 | A→C | 27.8% | T611T (ACA→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 196,351 | C→G | 31.0% | T619T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 196,390 | T→C | 30.0% | D632D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,032 | C→T | 6.1% | T846T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,089 | T→C | 13.8% | N865N (AAT→AAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,179 | A→G | 8.3% | V895V (GTA→GTG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,185 | C→T | 6.9% | T897T (ACC→ACT) | PP_0168 → | putative surface adhesion protein |
| RA | 197,551 | C→G | 13.0% | T1019T (ACC→ACG) | PP_0168 → | putative surface adhesion protein |
| RA | 197,572 | G→A | 22.3% | K1026K (AAG→AAA) | PP_0168 → | putative surface adhesion protein |
| RA | 197,590 | T→C | 22.8% | D1032D (GAT→GAC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,632 | T→C | 9.3% | T1046T (ACT→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 197,695 | G→C | 8.3% | T1067T (ACG→ACC) | PP_0168 → | putative surface adhesion protein |
| RA | 224,748 | C→T | 11.2% | G233G (GGC→GGT) | PP_0172 → | ABC transporter permease |
| RA | 278,742:1 | +A | 100% | intergenic (‑237/+77) | PP_0224 ← / ← sctC | DszC family monooxygenase/sulfur compound ABC transporter ATP‑binding protein |
| RA | 284,586 | T→A | 38.0% | intergenic (+33/+30) | betT‑II → / ← atsK | choline/carnitine/betaine transporter/alpha‑ketoglutarate‑dependent sulfonate dioxygenase |
| RA | 307,865:1 | +C | 100% | intergenic (+880/‑989) | hslO → / → PP_0254 | molecular chaperone HslO/hypothetical protein |
| RA | 336,124:1 | +T | 100% | coding (209/237 nt) | PP_0278 → | hypothetical protein |
| RA | 353,067 | A→G | 100% | intergenic (+34/+84) | hisF → / ← cbcV | imidazole glycerol phosphate synthase subunit HisF/choline/betaine/carnitine ABC transporter ATP binding protein |
| RA | 408,711 | G→A | 8.3% | Y651Y (TAC→TAT) | aceE ← | pyruvate dehydrogenase E1 component |
| RA | 499,203 | A→G | 100% | intergenic (+47/‑249) | uhpA → / → PP_0411 | two‑component system response regulator UhpA/polyamine ABC transporter ATP‑binding protein |
| RA | 542,239 | T→C | 10.8% | L160P (CTG→CCG) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 549,164 | C→T | 100% | L672F (CTC→TTC) | fusA → | elongation factor G 1 |
| RA | 699,722 | A→G | 56.3% | intergenic (+115/‑129) | PP_t06 → / → PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| RA | 756,535 | C→T | 16.6% | C377C (TGC→TGT) | PP_0646 → | hypothetical protein |
| RA | 766,980 | C→A | 6.5% | L158M (CTG→ATG) | metB → | cystathionine gamma‑synthase |
| RA | 942,226 | C→A | 5.4% | Q1132H (CAG→CAT) | PP_0806 ← | surface adhesion protein |
| RA | 1,070,246:1 | +GA | 100% | intergenic (+46/+96) | aroP‑I → / ← PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger‑like protein |
| RA | 1,126,645:1 | +C | 100% | intergenic (‑99/+50) | tdcG‑II ← / ← gcvP‑I | L‑serine dehydratase/glycine dehydrogenase |
| JC | 1,311,719 | Δ84 bp | 22.4% | intergenic (‑187/+8) | PP_1144 ← / ← rapA | membrane protein/RNA polymerase‑associated protein RapA |
| RA | 1,327,121 | C→T | 52.4% | intergenic (+97/‑196) | PP_16SE → / → PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| RA | 1,387,759 | G→A | 7.5% | P64P (CCG→CCA) | PP_1208 → | SlyX family protein |
| RA | 1,419,548:1 | +C | 100% | intergenic (‑37/+99) | PP_1242 ← / ← PP_1244 | hypothetical protein/hypothetical protein |
| RA | 1,499,480 | 2 bp→AC | 100% | intergenic (+57/‑106) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| RA | 1,499,506:1 | +C | 100% | intergenic (+83/‑81) | trpS → / → zapE | tryptophan‑‑tRNA ligase/nucleoside triphosphate hydrolase domain‑containing protein |
| JC | 1,780,067 | Δ62 bp | 36.5% | intergenic (+26/+19) | PP_1587 → / ← dapC | NhaP‑type Na+(K+)/H+ antiporter/N‑succinyl‑L,L‑diaminopimelate aminotransferase |
| RA | 1,838,351 | C→T | 6.2% | A74T (GCC→ACC) | PP_1643 ← | membrane protein |
| RA | 1,886,346 | T→C | 7.1% | L338P (CTG→CCG) | rmuC → | DNA recombination limiting inversions protein |
| RA | 1,902,235 | A→T | 5.6% | E929V (GAG→GTG) | PP_1703 → | assimilatory nitrate reductase/sulfite reductase |
| JC | 1,930,392 | Δ63 bp | 24.3% | [apeB] | [apeB] | |
| RA | 1,932,638:1 | +C | 100% | intergenic (‑105/+45) | rluA ← / ← minE | bifunctional tRNA pseudouridine(32) synthase TrmQ/ribosomal large subunit pseudouridine synthase RluA/cell division topological specificity factor |
| RA | 2,017,246 | Δ1 bp | 100% | intergenic (‑854/‑1480) | PP_1795 ← / → PP_1797 | hypothetical protein/HlyD family secretion protein |
| RA | 2,252,389 | G→T | 11.5% | W97L (TGG→TTG) | leuD → | 3‑isopropylmalate dehydratase small subunit |
| JC | 2,282,749 | Δ66 bp | 37.0% | intergenic (‑141/+23) | PP_2010 ← / ← PP_2011 | cytochrome b561/hypothetical protein |
| RA | 2,555,196 | A→G | 11.1% | T393A (ACC→GCC) | PP_2240 → | ABC transporter permease/ATP‑binding protein |
| RA | 2,563,262 | G→A | 5.1% | G334S (GGC→AGC) | dauA → | FAD‑dependent catabolic D‑arginine dehydrogenase |
| RA | 2,614,878 | A→G | 8.3% | T1273A (ACC→GCC) | PP_2287 → | internal core protein |
| RA | 2,714,590 | C→T | 5.9% | G172S (GGC→AGC) | metH ← | cobalamin‑dependent methionine synthase |
| RA | 2,741,599 | C→T | 10.2% | R1326R (CGC→CGT) | PP_2395 → | leucine‑rich repeat‑containing protein |
| RA | 2,764,618 | G→A | 5.9% | V128V (GTC→GTT) | PP_2418 ← | cobalamin ABC transporter substrate‑binding protein |
| RA | 2,863,829 | T→G | 40.0% | S297A (TCG→GCG) | gllR → | HTH‑type transcriptional regulator GalR |
| JC | 2,957,081 | Δ84 bp | 43.9% | intergenic (+36/‑77) | PP_2588 → / → PP_2589 | class III aminotransferase/aldehyde dehydrogenase family protein |
| RA | 2,958,523 | C→T | 100% | A428V (GCA→GTA) | PP_2589 → | aldehyde dehydrogenase family protein |
| RA | 3,227,704 | G→A | 6.1% | Q181Q (CAG→CAA) | PP_2828 → | hypothetical protein |
| RA | 3,323,603 | T→G | 22.3% | D97A (GAC→GCC) | PP_2923 ← | hypothetical protein |
| RA | 3,393,403 | T→A | 14.7% | intergenic (‑125/+104) | PP_2996 ← / ← PP_2997 | hypothetical protein/protein CnmA |
| RA | 3,447,291 | T→G | 22.6% | A19A (GCT→GCG) | PP_5556 → | bacteriophage lysis protein |
| JC | 3,464,245 | Δ92 bp | 12.9% | coding (22‑113/1929 nt) | PP_3078 ← | ABC transporter substrate‑binding protein |
| RA | 3,796,112 | G→A | 6.5% | N114N (AAC→AAT) | fcs ← | feruloyl‑CoA‑synthetase |
| RA | 3,845,703:1 | +G | 100% | intergenic (‑70/+28) | PP_3394 ← / ← PP_3395 | 3‑hydroxy‑3‑methylglutaryl‑CoA lyase/LysR family transcriptional regulator |
| RA | 3,924,436 | C→G | 8.0% | K126N (AAG→AAC) | peaB ← | quinohemoprotein amine dehydrogenase modification protein |
| RA | 3,951,159 | T→C | 100% | intergenic (‑123/+72) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 3,951,161 | A→T | 100% | intergenic (‑125/+70) | PP_3486 ← / ← PP_3487 | cytochrome c/hypothetical protein |
| RA | 3,959,885 | G→A | 6.8% | A167V (GCG→GTG) | mnxG ← | manganese‑oxidizing multicopper oxidase |
| RA | 4,001,773 | T→G | 36.8% | intergenic (+90/‑44) | dmoA‑II → / → allE | dimethyl‑sulfide monooxygenase/S‑ureidoglycine aminohydrolase |
| RA | 4,095,111 | C→T | 5.7% | A125T (GCA→ACA) | PP_3603 ← | GntR family transcriptional regulator |
| RA | 4,146,534 | T→C | 7.8% | F206S (TTC→TCC) | PP_3651 → | two‑component system sensor histidine kinase/response regulator |
| RA | 4,158,466 | T→G | 56.4% | L159R (CTG→CGG) | PP_3661 → | membrane protein |
| RA | 4,158,471 | A→C | 29.1% | S161R (AGC→CGC) | PP_3661 → | membrane protein |
| MC JC | 4,274,119 | 32 bp→45 bp | 100% | intergenic (‑243/‑1) | glcC ← / → glcD | transcriptional regulator GlcC/glycolate oxidase FAD‑linked subunit |
| RA | 4,348,812 | A→G | 59.1% | intergenic (‑70/+404) | PP_3820 ← / ← galU | group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| RA | 4,442,726 | A→C | 26.9% | intergenic (‑89/+49) | nicP‑II ← / ← nicT | porin‑like protein/metabolite transport protein NicT |
| RA | 4,545,927 | G→T | 6.4% | intergenic (‑15/+35) | hyuC ← / ← pydP | bifunctional N‑carbamoyl‑beta‑alanine amidohydrolase/allantoine amidohydrolase/NCS1 family transporter PydP |
| RA | 4,586,137 | 2 bp→TC | 100% | intergenic (+113/+101) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,140:1 | +G | 100% | intergenic (+116/+99) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,586,163:1 | +C | 100% | intergenic (+139/+76) | PP_4061 → / ← PP_4063 | hypothetical protein/long‑chain fatty acid‑‑CoA ligase |
| RA | 4,606,576 | G→A | 10.8% | R52H (CGC→CAC) | PP_4078 → | hypothetical protein |
| RA | 4,741,336 | A→C | 100% | intergenic (+466/+287) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,338 | C→G | 100% | intergenic (+468/+285) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,341 | C→T | 100% | intergenic (+471/+282) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,343 | 2 bp→TG | 100% | intergenic (+473/+279) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,346 | A→G | 100% | intergenic (+476/+277) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,350 | 3 bp→TGC | 100% | intergenic (+480/+271) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,362 | C→T | 100% | intergenic (+492/+261) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,364 | A→C | 100% | intergenic (+494/+259) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,367 | 2 bp→GC | 100% | intergenic (+497/+255) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,370 | A→C | 100% | intergenic (+500/+253) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,379 | A→G | 100% | intergenic (+509/+244) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,381 | A→C | 100% | intergenic (+511/+242) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,383 | G→C | 100% | intergenic (+513/+240) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,385 | C→T | 100% | intergenic (+515/+238) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,390:1 | +T | 100% | intergenic (+520/+233) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,396 | C→G | 100% | intergenic (+526/+227) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,399 | C→T | 100% | intergenic (+529/+224) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,401 | C→G | 100% | intergenic (+531/+222) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,403 | A→C | 100% | intergenic (+533/+220) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,741,405 | C→T | 100% | intergenic (+535/+218) | gltA → / ← yeiW | citrate synthase/putative oxidoreductase |
| RA | 4,754,544 | C→T | 6.6% | A286V (GCC→GTC) | pvdR → | ABC transporter permease |
| RA | 4,767,982 | A→T | 100% | intergenic (+89/‑93) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,767,984 | T→G | 100% | intergenic (+91/‑91) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,768,005 | T→A | 100% | intergenic (+112/‑70) | fpvA → / → tpaK | TonB‑dependent outer membrane ferripyoverdine receptor FpvA/probable terephthalate transporter, MFS superfamily protein |
| RA | 4,850,315 | G→C | 29.5% | intergenic (+17/‑89) | PP_4263 → / → hemN | cytochrome biogenesis protein/oxygen‑independent coproporphyrinogen III dehydrogenase |
| MC JC | 4,875,480 | Δ756 bp | 100% | coding (1‑756/756 nt) | PP_4283 ← | GntR family transcriptional regulator |
| RA | 4,923,012 | G→A | 6.6% | R573H (CGC→CAC) | PP_4330 → | toxin‑like protein |
| JC | 4,982,288 | +GGC | 93.2% | intergenic (‑24/+44) | PP_4387 ← / ← flgE | hypothetical protein/flagellar hook protein FlgE |
| RA | 5,182,361 | A→C | 15.3% | V110G (GTG→GGG) | def‑II ← | peptide deformylase |
| RA | 5,196,590 | T→G | 16.1% | intergenic (+29/+24) | PP_4574 → / ← PP_4575 | hypothetical protein/urea amidolyase‑like protein |
| JC | 5,203,271 | Δ98 bp | 14.3% | intergenic (‑54/‑29) | PP_4582 ← / → PP_4583 | membrane protein/putative Peptidase |
| RA | 5,258,571 | C→G | 24.8% | intergenic (+20/+25) | PP_5703 → / ← PP_4634 | type III effector protein HopJ/alpha/beta family hydrolase |
| RA | 5,301,098 | G→C | 11.9% | A236G (GCG→GGG) | recD ← | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease |
| RA | 5,301,104 | A→C | 21.5% | L234R (CTG→CGG) | recD ← | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease |
| RA | 5,368,842 | A→T | 5.9% | S80T (TCC→ACC) | rlmE ← | ribosomal RNA large subunit methyltransferase E |
| RA | 5,396,064 | A→G | 100% | V231A (GTA→GCA) | tphBII ← | 4‑hydroxythreonine‑4‑phosphate dehydrogenase |
| RA | 5,449,597 | C→G | 6.0% | A96G (GCC→GGC) | hemL → | glutamate‑1‑semialdehyde 2,1‑aminomutase |
| RA | 5,512,711 | A→C | 25.9% | Q32P (CAG→CCG) | urtB → | urea ABC transporter permease |
| RA | 5,512,720 | T→G | 23.8% | L35R (CTG→CGG) | urtB → | urea ABC transporter permease |
| JC | 5,539,836 | Δ81 bp | 17.5% | [nadE] | [nadE] | |
| JC | 5,658,396 | Δ80 bp | 16.8% | intergenic (‑36/+37) | epd ← / ← tktA | D‑erythrose 4‑phosphate dehydrogenase/transketolase A |
| RA | 5,677,565:1 | +G | 100% | intergenic (+112/+28) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,677,568 | G→C | 100% | intergenic (+115/+25) | rhlE‑II → / ← yceI | ATP‑dependent RNA helicase/polyisoprene‑binding acidic stress response factor |
| RA | 5,684,230:1 | +CGGG | 100% | intergenic (‑133/+71) | PP_4986 ← / ← PP_4987 | hemolysin III family channel protein/putative Chemotaxis protein |
| RA | 5,815,885 | A→G | 5.2% | intergenic (+178/‑10) | priA → / → argS | primosome assembly protein/arginine‑‑tRNA ligase |
| RA | 5,817,895 | A→T | 5.1% | Y88F (TAC→TTC) | PP_5090 → | cell division protein |
| RA | 5,887,840 | T→C | 5.5% | A38A (GCA→GCG) | PP_5159 ← | hypothetical protein |
| RA | 5,960,493 | Δ1 bp | 5.6% | coding (1082/2856 nt) | cyaA → | adenylate cyclase |
| RA | 6,016,700 | T→C | 100% | intergenic (+90/+20) | xpt → / ← PP_5266 | xanthine phosphoribosyltransferase/acetyl‑CoA hydrolase family protein |
| RA | 6,124,403 | C→T | 6.2% | V188M (GTG→ATG) | PP_5371 ← | rubredoxin/rubredoxin reductase |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_002947_CJ‑RC | 171372–172962 | 176294–172973 | 12–4923 | 5 [4] | [4] 5 | PP_16SA–[PP_5SA] | PP_16SA,PP_23SA,[PP_5SA] |
| * | * | ÷ | NC_002947_CJ‑RC | 176619–178392 | 181772–178403 | 12–5154 | 5 [4] | [4] 5 | PP_16SB–[PP_r01] | PP_16SB,PP_23SB,[PP_r01] |
| * | * | ÷ | NC_002947_CJ‑RC | 2194907 | 2195063 | 157 | 5 [4] | [4] 5 | PP_1940 | methyl‑accepting chemotaxis transducer |
| * | * | ÷ | NC_002947_CJ‑RC | 2478365 | 2478460 | 96 | 5 [3] | [4] 5 | PP_2172 | hypothetical protein |
| * | * | ÷ | NC_002947_CJ‑RC | 2820736 | 2821505 | 770 | 5 [4] | [4] 5 | [PP_2474] | [PP_2474] |
| * | * | ÷ | NC_002947_CJ‑RC | 3776349 | 3776398 | 50 | 5 [4] | [4] 5 | PP_3338/PP_3339 | cytochrome bd‑type quinol oxidase/hypothetical protein |
| * | * | ÷ | NC_002947_CJ‑RC | 4225976 | 4226301 | 326 | 5 [4] | [4] 5 | [PP_3705]–[PP_5623] | [PP_3705],[PP_5623] |
| * | * | ÷ | NC_002947_CJ‑RC | 4621501 | 4621640 | 140 | 5 [4] | [4] 5 | [PP_5654] | [PP_5654] |
| * | * | ÷ | NC_002947_CJ‑RC | 4630526 | 4630659 | 134 | 6 [4] | [4] 5 | PP_4094/PP_4096 | hypothetical protein/hypothetical protein |
| * | * | ÷ | NC_002947_CJ‑RC | 5509352 | 5509410 | 59 | 5 [4] | [4] 5 | [PP_4839] | [PP_4839] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | = 2472115 | 15 (0.320) | 4 (0.090) | 4/256 | NT | 16.3% | intergenic (+19/+130) | PP_2166/PP_2167 | anti‑anti‑sigma factor/PhoD‑like phosphatase |
| ? | NC_002947_CJ‑RC | 2472313 = | 27 (0.610) | coding (1783/1851 nt) | PP_2167 | PhoD‑like phosphatase | |||||
| * | ? | NC_002947_CJ‑RC | 5046766 = | 9 (0.190) | 33 (0.710) | 26/268 | NT | 78.7% | coding (136/237 nt) | PP_5681 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 5406601 | NA (NA) | intergenic (‑84/+633) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5046774 | 12 (0.260) | 7 (0.150) | 7/270 | NT | 36.8% | coding (128/237 nt) | PP_5681 | hypothetical protein |
| ? | NC_002947_CJ‑RC | 5404562 = | NA (NA) | intergenic (+1123/+45) | PP_4743/PP_4745 | hypothetical protein/transposase | |||||
| * | ? | NC_002947_CJ‑RC | 5140764 = | 103 (2.190) | 4 (0.090) | 3/266 | NT | 5.9% | coding (153/1380 nt) | PP_4524 | sodium‑solute symporter |
| ? | NC_002947_CJ‑RC | = 6168725 | 26 (0.560) | coding (332/963 nt) | PP_5406 | transposase | |||||
| * | ? | NC_002947_CJ‑RC | 5306595 = | 105 (2.230) | 5 (0.110) | 5/250 | NT | 5.1% | coding (2360/3483 nt) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit |
| ? | NC_002947_CJ‑RC | 5306636 = | 89 (2.040) | coding (2319/3483 nt) | recC | multifunctional ATP‑dependent DNA helicase/dsDNA/ssDNA exonuclease/ssDNA endonuclease recombinase subunit | |||||
| * | ? | NC_002947_CJ‑RC | = 5406601 | NA (NA) | 4 (0.090) | 4/268 | NT | 13.0% | intergenic (‑84/+633) | PP_4746/PP_4748 | transposase/amino acid ABC transporter substrate‑binding protein |
| ? | NC_002947_CJ‑RC | 6168718 = | 27 (0.570) | coding (339/963 nt) | PP_5406 | transposase | |||||
| * | ? | NC_002947_CJ‑RC | = 5991586 | 14 (0.300) | 6 (0.140) | 6/254 | NT | 29.9% | intergenic (+65/‑481) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991778 = | 15 (0.340) | intergenic (+257/‑289) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||