mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 27 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | 6063246 = | 172 (1.050) | 3 (0.020) | 3/246 | NT | 2.0% | intergenic (+67/+114) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein |
| ? | NC_002947_CJ‑RC | 6063333 = | 142 (0.970) | intergenic (+154/+27) | PP_5311/PP_5312 | signal transduction protein/hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5991574 | 113 (0.690) | 5 (0.030) | 5/260 | NT | 4.3% | intergenic (+53/‑493) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| ? | NC_002947_CJ‑RC | 5991766 = | 115 (0.740) | intergenic (+245/‑301) | kefB‑III/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | NC_002947_CJ‑RC | 5847963 = | 187 (1.150) | 4 (0.030) | 4/260 | NT | 2.2% | coding (59/486 nt) | coaD | phosphopantetheine adenylyltransferase |
| ? | NC_002947_CJ‑RC | 5847994 = | 178 (1.150) | coding (90/486 nt) | coaD | phosphopantetheine adenylyltransferase | |||||
| * | ? | NC_002947_CJ‑RC | = 5695377 | 112 (0.690) | 3 (0.020) | 3/252 | NT | 2.4% | intergenic (+31/‑139) | PP_4994/PP_4995 | hypothetical protein/exopolysaccharide biosynthesis protein |
| ? | NC_002947_CJ‑RC | = 5695439 | 138 (0.920) | intergenic (+93/‑77) | PP_4994/PP_4995 | hypothetical protein/exopolysaccharide biosynthesis protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5682638 | 153 (0.940) | 3 (0.020) | 3/242 | NT | 2.0% | intergenic (+42/‑122) | bioA/rsmE | adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA/16S rRNA (uracil(1498)‑N(3))‑methyltransferase |
| ? | NC_002947_CJ‑RC | = 5682710 | 160 (1.110) | intergenic (+114/‑50) | bioA/rsmE | adenosylmethionine‑‑8‑amino‑7‑oxononanoate aminotransferase BioA/16S rRNA (uracil(1498)‑N(3))‑methyltransferase | |||||
| * | ? | NC_002947_CJ‑RC | 4795861 = | 163 (1.000) | 3 (0.020) | 3/270 | NT | 1.8% | coding (821/984 nt) | PP_4222 | protein SyrP |
| ? | NC_002947_CJ‑RC | 4795886 = | 160 (1.000) | coding (796/984 nt) | PP_4222 | protein SyrP | |||||
| * | ? | NC_002947_CJ‑RC | 3987025 = | 134 (0.820) | 3 (0.020) | 3/264 | NT | 2.4% | coding (1302/1746 nt) | oplB | 5‑oxoprolinase B |
| ? | NC_002947_CJ‑RC | 3987039 = | 120 (0.760) | coding (1316/1746 nt) | oplB | 5‑oxoprolinase B | |||||
| * | ? | NC_002947_CJ‑RC | 3348640 = | 159 (0.980) | 3 (0.020) | 3/258 | NT | 1.9% | coding (948/1815 nt) | PP_2944 | sensor histidine kinase |
| ? | NC_002947_CJ‑RC | 3348690 = | 154 (1.000) | coding (998/1815 nt) | PP_2944 | sensor histidine kinase | |||||
| * | ? | NC_002947_CJ‑RC | = 3275458 | 167 (1.020) | 3 (0.020) | 3/260 | NT | 1.8% | coding (261/321 nt) | PP_2873 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 3275469 | 166 (1.070) | coding (272/321 nt) | PP_2873 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | 2514410 = | 124 (0.760) | 3 (0.020) | 3/244 | NT | 2.8% | intergenic (+70/+149) | PP_2207/phnX | membrane protein/phosphonoacetaldehyde hydrolase |
| ? | NC_002947_CJ‑RC | 2514518 = | 100 (0.690) | intergenic (+178/+41) | PP_2207/phnX | membrane protein/phosphonoacetaldehyde hydrolase | |||||