mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (lowest skew 10 of 16 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947_CJ‑RC | 6101664 = | 85 (1.130) | 3 (0.040) | 3/252 | NT | 3.7% | coding (240/867 nt) | PP_5350 | RpiR family transcriptional regulator |
| ? | NC_002947_CJ‑RC | 6101701 = | 77 (1.090) | coding (203/867 nt) | PP_5350 | RpiR family transcriptional regulator | |||||
| * | ? | NC_002947_CJ‑RC | 6065783 = | 79 (1.050) | 3 (0.040) | 3/260 | NT | 4.0% | intergenic (‑81/‑144) | rubA/ubiC | rubredoxin‑1/chorismate pyruvate‑lyase |
| ? | NC_002947_CJ‑RC | 6065825 = | 67 (0.920) | intergenic (‑123/‑102) | rubA/ubiC | rubredoxin‑1/chorismate pyruvate‑lyase | |||||
| * | ? | NC_002947_CJ‑RC | = 5971147 | 81 (1.070) | 3 (0.040) | 3/258 | NT | 4.0% | coding (240/360 nt) | PP_5723 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 5971185 | 65 (0.900) | coding (202/360 nt) | PP_5723 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5906225 | 89 (1.180) | 3 (0.040) | 3/260 | NT | 3.2% | coding (107/441 nt) | PP_5176 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 5906244 | 95 (1.310) | coding (126/441 nt) | PP_5176 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 5802523 | 78 (1.030) | 3 (0.040) | 3/264 | NT | 3.6% | coding (155/1590 nt) | PP_5077 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 5802549 | 84 (1.140) | coding (129/1590 nt) | PP_5077 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | 5623822 = | 92 (1.220) | 4 (0.050) | 3/268 | NT | 4.3% | coding (257/774 nt) | PP_4939 | hypothetical protein |
| ? | NC_002947_CJ‑RC | 5623847 = | 85 (1.130) | coding (232/774 nt) | PP_4939 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 3881301 | 60 (0.790) | 3 (0.040) | 3/256 | NT | 4.8% | coding (3136/3180 nt) | mexF | multidrug RND transporter MexF |
| ? | NC_002947_CJ‑RC | = 3881385 | 62 (0.870) | coding (44/1416 nt) | oprN | multidrug RND transporter outer membrane protein OprN | |||||
| * | ? | NC_002947_CJ‑RC | = 3279948 | 78 (1.030) | 3 (0.040) | 3/256 | NT | 4.1% | coding (132/594 nt) | PP_2879 | hypothetical protein |
| ? | NC_002947_CJ‑RC | = 3280010 | 65 (0.910) | coding (70/594 nt) | PP_2879 | hypothetical protein | |||||
| * | ? | NC_002947_CJ‑RC | = 2522292 | 74 (0.980) | 3 (0.040) | 3/264 | NT | 4.2% | coding (3543/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein |
| ? | NC_002947_CJ‑RC | = 2522312 | 65 (0.880) | coding (3563/4446 nt) | PP_2212 | leucine‑rich repeat‑containing protein | |||||
| * | ? | NC_002947_CJ‑RC | 1907453 = | 75 (0.990) | 3 (0.040) | 3/252 | NT | 4.0% | coding (286/951 nt) | PP_1707 | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein |
| ? | NC_002947_CJ‑RC | 1907528 = | 75 (1.060) | coding (211/951 nt) | PP_1707 | D‑isomer specific 2‑hydroxyacid dehydrogenase family protein | |||||