Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084634,616,4500TG30.7% 305.5 / 20.1 170intergenic (‑170/+32)hda/PA14_RS21180DnaA regulatory inactivator Hda/DUF2066 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (41/56);  new base G (41/2);  total (104/66)
Fisher's exact test for biased strand distribution p-value = 4.59e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 174 total aligned reads displayed.

GAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGG  >  NC_008463/4616302‑4616599
                                                                                                                                                     |                                                                                                                                                        
gAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑c                                                                                                                                                        <  2:7427626/150‑1 (MQ=255)
 aaaaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑cc                                                                                                                                                       <  2:489699/150‑1 (MQ=255)
 aaaaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGc‑c‑cc                                                                                                                                                       >  1:5221004/1‑150 (MQ=255)
 aaaaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑G‑cc                                                                                                                                                       >  2:6347597/1‑150 (MQ=255)
   aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAATGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCGCGC‑G‑CCgg                                                                                                                                                     >  1:2741652/1‑149 (MQ=255)
   aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGt                                                                                                                                                     <  2:300932/150‑1 (MQ=255)
    aCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑C‑CCggt                                                                                                                                                    >  1:8887105/1‑148 (MQ=255)
     cgccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTg                                                                                                                                                   <  2:2625479/150‑1 (MQ=255)
     cgccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑G‑CCGGTg                                                                                                                                                   >  2:10083357/1‑150 (MQ=255)
       ccgcAGGAGTCACCGTAAAGGCTGCAACGTTTAGACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAACGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCa                                                                                                                                                 <  1:8685601/150‑1 (MQ=255)
        cgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑G‑CCCGTGCAt                                                                                                                                                >  2:2959514/1‑150 (MQ=255)
           aGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAgg                                                                                                                                             <  1:4119132/150‑1 (MQ=255)
            ggAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCGGGCCCC‑G‑CCGGTGccgaggg                                                                                                                                            >  1:10488749/1‑144 (MQ=255)
            ggAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑C‑GCGTTggagatgc                                                                                                                                            >  2:3981086/1‑143 (MQ=255)
             gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAg                                                                                                                                           <  2:7894065/150‑1 (MQ=255)
             gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAg                                                                                                                                           <  1:6848100/150‑1 (MQ=255)
             gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAg                                                                                                                                           <  2:8463431/150‑1 (MQ=255)
             gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAg                                                                                                                                           <  2:1643296/150‑1 (MQ=255)
              aGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGc                                                                                                                                          <  1:6784007/150‑1 (MQ=255)
               gTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCg                                                                                                                                         <  1:10206838/150‑1 (MQ=255)
                tCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCCAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑CCGGTGGAGAGGCGCgg                                                                                                                                        >  2:4946985/1‑150 (MQ=255)
                  aCCGTAACGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGAt                                                                                                                                      <  1:155740/150‑1 (MQ=255)
                  aCCGTAAAGTCTGCACAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGAt                                                                                                                                      <  2:3958093/150‑1 (MQ=255)
                  aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCGCCC‑A‑CCGAGGCAGAGGGGCGGag                                                                                                                                      >  1:2333281/1‑149 (MQ=255)
                  aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGaa                                                                                                                                      <  1:1154913/150‑2 (MQ=255)
                  aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGAt                                                                                                                                      <  1:144441/150‑1 (MQ=255)
                  aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGAt                                                                                                                                      <  2:3729446/150‑1 (MQ=255)
                   ccGTAAAGGCTGCACAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCACCTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATc                                                                                                                                     <  2:7436590/150‑1 (MQ=255)
                   ccGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAACCTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATc                                                                                                                                     <  2:7493962/150‑1 (MQ=255)
                   ccGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑A‑CCCTTGAATAGGCGCGGAta                                                                                                                                     >  2:6722307/1‑149 (MQ=255)
                    cGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCg                                                                                                                                    <  2:2659610/150‑1 (MQ=255)
                    cGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCACGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCg                                                                                                                                    <  1:4408535/150‑1 (MQ=255)
                     gTATAGGCTGCATAGTTTAGTCGCCTCGGCAAGGCCGCACAATGAGCAACTTGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑ACGTTGCATAGGAGCGGATCgg                                                                                                                                   <  1:4852207/150‑1 (MQ=255)
                     gTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCgg                                                                                                                                   <  1:8086753/150‑1 (MQ=255)
                      tAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGgc                                                                                                                                  <  1:526567/150‑1 (MQ=255)
                      tAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGgc                                                                                                                                  <  1:5336289/150‑1 (MQ=255)
                        aaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCCC‑G‑CCCGTGCAGATGAGCCGCTCGgcgc                                                                                                                                >  1:9577520/1‑150 (MQ=255)
                              gCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CCCTTGGATAGGGGCGGCTCGGCGCGCCgcc                                                                                                                          >  1:6194944/1‑148 (MQ=255)
                              gCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCGC‑T‑CCGTGGCATAGGAGCGGGTCGGCGCGCCGAc                                                                                                                          >  2:3301199/1‑150 (MQ=255)
                                aaaGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑C‑CCCGTGCCTAGGTGCGGGTCGGGGCGCCgcacc                                                                                                                        >  1:8833167/1‑146 (MQ=255)
                                  aGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑CCCGTGCCTAGGAGCGGATAGGCGCGCCGAccaca                                                                                                                      >  2:7101790/1‑146 (MQ=255)
                                   gTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCCGTGGATAGGAGCGGATCGGCGCGCCGACTCAca                                                                                                                     >  2:8009965/1‑149 (MQ=255)
                                    tttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGGTGCCTAGGAGGGGATCGGCGCGCCGACACAC‑Tg                                                                                                                   >  2:6346645/1‑150 (MQ=255)
                                     ttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑T‑CCGCAGGATAGGAGGGGGTCGGCGCGCCCacacacaga                                                                                                                   >  1:4207352/1‑147 (MQ=255)
                                      tataCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CCCGTGCGACTGAGCGGCTGGGCGCGCCcacacaagagc                                                                                                                  >  1:2265393/1‑145 (MQ=255)
                                         aCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCCGCCCCC‑C‑CCGGTGGCTAGGGGCGGGGCGGCGCGCCCACACAC‑AGCCCG‑c                                                                                                             >  1:2584651/1‑150 (MQ=255)
                                            ccTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑GCGGTGCATAGGGGCGGGTCGGCGCGCCGGCGCAC‑TGCCAG‑CGGa                                                                                                          >  2:9089608/1‑150 (MQ=255)
                                                  cAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCAGCGGCCGGTCGCGCGCCGGCCCCC‑A‑CCGTGGGCTATGCGCGGTTAGGGGCGCCGACTCCC‑GGCCAGCCGGAAAtat                                                                                                     >  2:4557462/1‑148 (MQ=255)
                                                     ggCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCGGCCCGC‑G‑CCGGTGCAAAGGTGCGGTTCGGCGCGCCGGCTAAC‑AGCCCG‑CCGAAATTAAggt                                                                                                 >  2:5336333/1‑148 (MQ=255)
                                                         gCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCGTTGGATAGGTGCGGCTCGGCGCGCCGACGCAC‑AGCCAC‑CGGCAAATAAGGTgggg                                                                                             >  2:11032875/1‑149 (MQ=255)
                                                          cacaCTGACCAACTCGCAAAGCAAAACCAATGTTTTGCCTATCGCCGCGCCCCCTTCCCAAGCGCATCGGCGGGGCGCGCCCCGGCCCGC‑C‑CGGTTCAAGCGTCGCGGAGCGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGgac                                                                                            <  2:4383881/150‑1 (MQ=255)
                                                                      cTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCGG‑G‑CCGTTGGATTTGTAGGGAGAGGCGCGCCCGCACAA‑AGGCAG‑CGGGAATTGAGTGTGGGCGAGGACGGGAcc                                                                                >  2:9803392/1‑150 (MQ=255)
                                                                      cTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑A‑CCGGTTGAAAGGATCGGAAAGGCGCGCCGACACAC‑AGCCCC‑CGGAAAATAATTTTGGACGAAGAAGGCAcc                                                                                >  2:11074127/1‑150 (MQ=255)
                                                                        agccaagaaaAATCATAGTTTGGCCTTTAGCCGCGGCTCCGTGCCCCGACCATCGGCCGGGCCCGCGCCGCCCCGC‑T‑CCGTTGCATCGGAGCGTAGCGCCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCAccgc                                                                              <  2:9813039/147‑1 (MQ=255)
                                                                          gcaagcaaAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑CCCTTGGAAAGGGGCGGATAGGCGCGCCCCCACAC‑AGCCAC‑CCGCAAAAAAGGTGGGGCGTCGTCGGCAcccccc                                                                            >  1:6406335/1‑149 (MQ=255)
                                                                          caaacaaaaaTCATCGTTTTGCCGATCGCCGTGGCTCCTTCCCCCTCGCTTGGGCGGGGCGCGCGCCGGCCCGC‑C‑CGTTTCCATGGGCGCGGTGCGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCAccgccg                                                                            <  2:6151339/144‑1 (MQ=255)
                                                                                aaaaTCAATGGTTTGCGTACCGCGGAGGCTCCTTGCCCAGCCCAGGGGCGGTGCGCCCGCGGGCCCGC‑T‑CGGTTTAATCGGAGGGTAGGGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTgg                                                                      <  2:5078105/150‑1 (MQ=255)
                                                                                 aaaTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCGC‑G‑CCCTTGGATAGGGGCGGATCGGCGCGCCCACAAAC‑AGCCCC‑CGGAAAATAATTTTGGGAGACGACGGCCCCCCCCCGCgggg                                                                     >  2:764492/1‑150 (MQ=255)
                                                                                 aaaTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCGGGCCGC‑TACCGGTG‑ATAGGAGGCGGTCGGGGCGGCCAATCAC‑AGCCAC‑CGGTAAATCAGTTTGGACGACGACCGGACCGGCGCGCAggg                                                                     >  2:2471373/1‑150 (MQ=255)
                                                                                     cAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑A‑CCGTTTGCTAGGGGCGGTTCGGCGCGCCGCCGAAC‑AGCCCG‑CGGAAAATAAGGTGGGACACAGACGGCAACGCCGCGCTGGGGGCt                                                                 >  2:9924303/1‑150 (MQ=255)
                                                                                      aaaGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCGC‑G‑CCGTTGGCTAGGTTCGGATCGGGGCGCCGCCACCC‑AGCCCC‑CGGTAATTCAGTTGGGGCGACCACGGGACCCCCGCGCGGGgcgcgg                                                                >  2:7176865/1‑148 (MQ=255)
                                                                                         ggTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CGCGTGGATAGGAGCGGGTCGGCGCGCCGACACAA‑AGCCAG‑CGGGAATGCATGTGGGGCGACGACGGCACCGCCGCGCGGGGGGcggcgg                                                             >  2:4667735/1‑150 (MQ=255)
                                                                                               ccGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGCGC‑CCGTTGC‑GAGGAGGGGGGGGGCGCGGCGCCACAC‑ATCCCC‑CCGAAAATAACGTGGGGCGACGGCGGCAACCCCGCGCGGGGGGCAGCgggcgggc                                                       >  2:3535840/1‑150 (MQ=255)
                                                                                                cGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGGTAGGCGCGCCGACACAC‑TGCCAC‑CGGAAAATGAGTTTGGACGACGGCGGCACCGCCGCGCGGGGCGCTGCGGGCTGGcc                                                      >  2:10858076/1‑150 (MQ=255)
                                                                                                 gATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCGC‑C‑ACGGGGGATATGAGCGGGGAGGCGCGCCGACACAC‑AGCCAC‑CGGGAAATTAATGGGGGCGACGACCGGAACCCCCCGCGGGGGGCGGCggggggggcc                                                     >  2:2767498/1‑143 (MQ=255)
                                                                                                  aTAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CCCGTGCCGAGGGGCGGATGGGGGGGCCGCCGCAC‑GGCCCC‑CGGACATTGAGTGGGGGCGCCGCCGGCACCCCCCCGCGGGGGGCGGCGggcggggcgg                                                    >  2:6092168/1‑150 (MQ=255)
                                                                                                   tcgCCGCGGCCCCTGCCCCAGCGCAGCGCCGGGCCCCGCGCCGCCCCGC‑C‑CGGTGGCATCGGCGCGGAGCGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGa                                                   <  1:8191005/148‑1 (MQ=255)
                                                                                                    ccccGCGGCGCCTTGCCCCGCGCAGCGGCGGGGCGCGCGCCGCCCGGC‑T‑CGGTTGCATCGGCGGGGCGCGGCGCGCCGACTCAC‑GGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAg                                                  <  2:576413/148‑1 (MQ=255)
                                                                                                    aGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCCC‑C‑CCGGTTCTTAGTAGCGGGTAGGCGCGGCGCCACAC‑TTCCCC‑CGGGAAATAAGTTGGGTCGACGACCGCCCCCCCGCGCTGGGGGCGGGGggcggggcgggg                                                  >  2:5184881/1‑148 (MQ=255)
                                                                                                          ggCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑ACCTTGCATAGGAGCGGGTCGGCGCCCCGAAGCCCATGCCCC‑CGGAAA‑TAAGGTGGGGCGACGCCCGCCACCCCCCGCAGGGGCCAGCGGGGTGGCCCGGGGCaagc                                            >  2:9915018/1‑147 (MQ=255)
                                                                                                            cTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCCC‑G‑CCCGTGGAGAGGGGCGGAGCGGCGCGCCCACCCAC‑AGGCCC‑CGGGAATTGAGTTGGGGCGGCGACGGGACCCCCGCCCGGGGGGCTGCGGGgggggcgggggccacccc                                          >  2:6886357/1‑144 (MQ=255)
                                                                                                              ccTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCCC‑T‑CCGGTGGTTAGGAGGGGGTGGGCGGGCCCTCGCAC‑AGCCAG‑CGGGTAATGAGGTTGGTCGTCGACGGGCCCGCCGCGCTGGGCGCTGCGGGCGGGCCGGAGGCCTCAAGCg                                        >  2:7568669/1‑150 (MQ=255)
                                                                                                                 gccccAGAGCAGCGGCCGGCCGCGCGCCGGCCCGC‑T‑CGTTGGCTTAGGAGGGGCGGGGCCCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTa                                     <  2:10038240/148‑1 (MQ=255)
                                                                                                                        cgcccgggCGGGGCGCGCGCCGGCCCCC‑T‑CGGTTGCTTCGGGGCGGCCCGCCCCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTc                              <  1:8509572/144‑1 (MQ=255)
                                                                                                                              ggCCGGTCGCGCCCCGGCCCGC‑T‑CCGTTTCATCGGCGGGGACCGCCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCAGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCgg                        <  2:1910919/150‑1 (MQ=255)
                                                                                                                                 gggccgcgccCCGCCCCGC‑T‑CGGTGGAATCGGCGGTGACCGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGAt                     <  1:4224077/146‑1 (MQ=255)
                                                                                                                                  gggcccccgcccgccCGC‑T‑CCGTTGATTAGGGGCGTCCCGCCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGAtt                    <  1:5103813/143‑1 (MQ=255)
                                                                                                                                     cgcgcgCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTcc                 >  2:7700750/1‑150 (MQ=255)
                                                                                                                                      gcgcgcCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                >  1:7154370/1‑150 (MQ=255)
                                                                                                                                      ccgcgcCGGCCCGC‑G‑CCGTTCCTTCGGTCGGGAGGGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                <  2:3217948/149‑1 (MQ=255)
                                                                                                                                      ccgcgcCGCCCCGC‑C‑CGGTGGCACTGGCGCGGTCCGGCGCCCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                <  2:5827944/149‑1 (MQ=255)
                                                                                                                                           ccGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc           >  2:8225606/1‑150 (MQ=255)
                                                                                                                                           ccGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc           >  2:9007091/1‑150 (MQ=255)
                                                                                                                                           ccGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc           >  2:2348587/1‑150 (MQ=255)
                                                                                                                                           ccGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc           >  2:2348604/1‑150 (MQ=255)
                                                                                                                                           ccGGCCCGC‑C‑CCGTTCCTTTCGCGGGGATCGGCCCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc           <  1:6929831/150‑1 (MQ=255)
                                                                                                                                             ggCCCGC‑T‑CCGTTGCATCGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATGTCCTGCAACTg         >  2:1236573/1‑150 (MQ=255)
                                                                                                                                             ggCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTg         >  1:3503717/1‑150 (MQ=255)
                                                                                                                                              gCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgc        >  2:2653500/1‑150 (MQ=255)
                                                                                                                                               cccGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcg       >  2:6643915/1‑150 (MQ=255)
                                                                                                                                               cccGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcg       >  2:8664025/1‑150 (MQ=255)
                                                                                                                                                ccGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCACCTgcgc      >  2:4252672/1‑150 (MQ=255)
                                                                                                                                                ccGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcgc      >  1:2381577/1‑150 (MQ=255)
                                                                                                                                                 cGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGCTTTCCTGCAACTGCGcc     >  2:4815430/1‑150 (MQ=255)
                                                                                                                                                 cGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGcc     >  1:7779935/1‑150 (MQ=255)
                                                                                                                                                  gC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCa    >  2:5163472/1‑150 (MQ=255)
                                                                                                                                                   c‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg   >  1:5897664/1‑150 (MQ=255)
                                                                                                                                                   c‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg   >  1:3011756/1‑150 (MQ=255)
                                                                                                                                                   c‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg   >  1:10866439/1‑150 (MQ=255)
                                                                                                                                                     t‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAgg  >  1:9784806/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                        
GAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATAGGAGCGGATCGGCGCGCCGACTCAC‑TGCCAG‑CGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGG  >  NC_008463/4616302‑4616599

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑