New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_008463 3175697 =329 (0.650)484 (1.040) 218/274 0.0 62.4% intergenic (+390/+106) PA14_RS30505/PA14_RS14515 hypothetical protein/hypothetical protein
?NC_008463 = 3177289 284 (0.610)intergenic (‑69/‑218) PA14_RS14525/PA14_RS14530 hypothetical protein/Tn3 family transposase

Only 100 of 920 total aligned reads displayed.

TTCATTGTCAGTCACCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATGTCCGA  >  NC_008463/3175547‑3175847
                                                                                                                                                      |                                                                                                                                                      
gagaggatcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagc                                                                                                                                                        <  2:7359008‑M1/1‑1 (MQ=255)
gagaggatcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagc                                                                                                                                                        <  1:5526013‑M1/1‑1 (MQ=255)
 agaggatcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCa                                                                                                                                                       <  1:1996053‑M1/2‑1 (MQ=255)
 agaggatcgcgagacggcgcgtacagcggcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCa                                                                                                                                                       >  2:1204084‑M1/150‑151 (MQ=255)
  cATTGTCAGTCACCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACAt                                                                                                                                                      >  1:8491706/1‑151 (MQ=255)
   aggatcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcatgcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCAtt                                                                                                                                                     <  1:2932073‑M1/4‑1 (MQ=255)
   aggatcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCAtt                                                                                                                                                     <  2:1834563‑M1/4‑1 (MQ=255)
   aggatcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCAtt                                                                                                                                                     >  1:3243533‑M1/148‑151 (MQ=255)
    ttGTCAGTCACCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTa                                                                                                                                                    <  1:10749946/151‑1 (MQ=255)
     tGTCAGTCACCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTAt                                                                                                                                                   <  2:4229009/151‑1 (MQ=255)
       tcgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGc                                                                                                                                                 <  2:10567771‑M1/8‑1 (MQ=255)
       tcagtcaCCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGc                                                                                                                                                 >  1:10177026/1‑151 (MQ=255)
        cgcgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCg                                                                                                                                                >  1:11116100‑M1/143‑151 (MQ=255)
          cgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGaa                                                                                                                                              >  1:10949921‑M1/141‑151 (MQ=255)
          cgagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGaa                                                                                                                                              >  1:378370‑M1/141‑151 (MQ=255)
           tcaCCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAg                                                                                                                                             >  1:8218813/1‑151 (MQ=255)
           gagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATTCGAAg                                                                                                                                             <  2:6878641‑M1/12‑1 (MQ=255)
           gagacggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAg                                                                                                                                             >  1:10615024‑M1/140‑151 (MQ=255)
             aCCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGcc                                                                                                                                           <  1:9555573/151‑1 (MQ=255)
              acggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttaagcgacgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCt                                                                                                                                          <  2:7636817‑M1/15‑1 (MQ=255)
               cggcgcgtacagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCtt                                                                                                                                         >  2:8660742‑M1/136‑151 (MQ=255)
                   ttCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGc                                                                                                                                     <  2:6062008/151‑1 (MQ=255)
                   ttCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGc                                                                                                                                     <  2:3621643/151‑1 (MQ=255)
                       acagcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAagcaatt                                                                                                                                 <  2:950872‑M1/24‑4 (MQ=255)
                         gACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTACGCATTTcc                                                                                                                               >  1:6828960/1‑151 (MQ=255)
                         agcgtcgcttgatcgatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtgcgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTTAGCATTTcc                                                                                                                               <  1:7872422‑M1/26‑1 (MQ=255)
                                      cgatcagatgctgcggtacagggagagggtccggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGAt                                                                                                                  <  1:4380539‑M1/39‑1 (MQ=255)
                                       gatcagatgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATc                                                                                                                 <  1:10008885‑M1/40‑1 (MQ=255)
                                         tcagatgctgcggtacagggagagggtcaggcttgcgcagaatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCa                                                                                                               >  2:11093040‑M1/110‑151 (MQ=255)
                                              tgctgcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGaaa                                                                                                          >  2:8282611‑M1/105‑151 (MQ=255)
                                                aTGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGaaaaa                                                                                                        >  2:10096384/1‑151 (MQ=255)
                                                  gcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAAcc                                                                                                      >  1:7359008‑M1/101‑151 (MQ=255)
                                                  gcggtacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAAcc                                                                                                      <  2:5320173‑M1/51‑1 (MQ=255)
                                                  gcggtacagcgagagggtcaggcttgcgcaaaatcggccctaggttacgcgccgcccggagccgccctattgaccgggcgccgctcaacataaggccgagCATTAAGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAAcc                                                                                                      >  2:6536110‑M1/101‑151 (MQ=255)
                                                      tacagggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCgg                                                                                                  >  1:1293202‑M1/97‑151 (MQ=255)
                                                        ttGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGgag                                                                                                >  1:9413207/1‑151 (MQ=255)
                                                         agggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGgaga                                                                                               <  2:397169‑M1/58‑1 (MQ=255)
                                                          gagagaGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGAt                                                                                              >  1:2749140/1‑151 (MQ=255)
                                                           ggagagggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATc                                                                                             <  1:2364651‑M1/60‑1 (MQ=255)
                                                           agagagTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATc                                                                                             <  2:4447177/151‑1 (MQ=255)
                                                           agagagTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATc                                                                                             <  2:7162094/151‑1 (MQ=255)
                                                               agggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGctc                                                                                         >  1:7196948‑M1/88‑151 (MQ=255)
                                                               agTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGctc                                                                                         <  1:1834519/151‑1 (MQ=255)
                                                                gggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGctct                                                                                        >  2:2277099‑M1/87‑151 (MQ=255)
                                                                gggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGctct                                                                                        <  2:9223716‑M1/65‑1 (MQ=255)
                                                                gggtcagccttgcgcatcctcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgcacaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGctct                                                                                        >  1:5180934‑M1/87‑151 (MQ=255)
                                                                 ggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtcggggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTa                                                                                       >  1:10475056‑M1/86‑151 (MQ=255)
                                                                 ggtcaggcttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTa                                                                                       >  2:8586356‑M1/86‑151 (MQ=255)
                                                                      gCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCggg                                                                                  <  1:5376561/151‑1 (MQ=255)
                                                                        cttgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGt                                                                                >  2:3144352‑M1/79‑151 (MQ=255)
                                                                          tgcgcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGttt                                                                              <  1:589285‑M1/75‑1 (MQ=255)
                                                                             gcataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCt                                                                           >  1:8679630‑M1/74‑151 (MQ=255)
                                                                              cataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCtt                                                                          >  2:4883013‑M1/73‑151 (MQ=255)
                                                                               gggTTTGTCGAATCAGTGTCTTACAAGGCTCATGCACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGTCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTg                                                                         >  2:752505/1‑151 (MQ=255)
                                                                               ataatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTGTCCTTg                                                                         <  2:8968029‑M1/80‑1 (MQ=255)
                                                                                 aatcggccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTCAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCt                                                                       <  2:5545890‑M1/82‑1 (MQ=255)
                                                                                     ggccctctgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTGCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCt                                                                   >  2:2914232‑M1/66‑151 (MQ=255)
                                                                                     gTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCt                                                                   <  2:9788311/151‑1 (MQ=255)
                                                                                       ccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCTTTTCCAGGCGGCCAGGATCCACGAACAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAg                                                                 <  2:5041929‑M1/88‑1 (MQ=255)
                                                                                       ccctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATGTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAg                                                                 >  1:8961641‑M1/64‑151 (MQ=255)
                                                                                        cctatgttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGc                                                                <  1:4633661‑M1/89‑1 (MQ=255)
                                                                                          aTCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCa                                                              >  1:4863465/1‑151 (MQ=255)
                                                                                           tCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAg                                                             <  1:3084418/151‑1 (MQ=255)
                                                                                           tCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAg                                                             >  2:627824/1‑151 (MQ=255)
                                                                                             aGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTg                                                           <  2:9629238/151‑1 (MQ=255)
                                                                                             aGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTg                                                           >  1:6267716/1‑151 (MQ=255)
                                                                                              ttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGa                                                          <  1:2132968‑M1/95‑1 (MQ=255)
                                                                                              ttacgcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGa                                                          <  1:7701475‑M1/95‑1 (MQ=255)
                                                                                                  gcgccgcccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGcc                                                      >  2:7892662‑M1/53‑151 (MQ=255)
                                                                                                   ttACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCt                                                     >  2:6728878/1‑151 (MQ=255)
                                                                                                     aCAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTa                                                   >  2:5243595/1‑151 (MQ=255)
                                                                                                        aGGCTCATGAACATATCTGACATAGCATATGGTTTAACAAAATAAACATTATGCGAAGACTTAAGAATTTCCAGGCGGCCAGGATCCACTAAAAAACCCGTAGATCTCTCTACCTTGGTTTCCTTGATTTCTAGCCAGAGAAGCCTTATct                                                >  2:2473263/1‑150 (MQ=255)
                                                                                                         ccggagccgccgtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCgg                                               >  2:3419618‑M1/46‑151 (MQ=255)
                                                                                                         ccggagccgccgtattgtccgggcggcgctcaacataaggccgagCAGTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCgg                                               >  1:4097677‑M1/46‑151 (MQ=255)
                                                                                                                gAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTcc                                        >  2:4107326/1‑151 (MQ=255)
                                                                                                                    gtattgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCAccc                                    <  1:7035315‑M1/117‑1 (MQ=255)
                                                                                                                    aTTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCAccc                                    >  2:5119480/1‑151 (MQ=255)
                                                                                                                      attgtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGa                                  <  2:8149250‑M1/119‑1 (MQ=255)
                                                                                                                        tgtccgggcggcgctcaccataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATg                                >  2:5705011‑M1/31‑151 (MQ=255)
                                                                                                                        cTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATg                                <  1:6647118/151‑1 (MQ=255)
                                                                                                                        cTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATg                                <  1:6496463/151‑1 (MQ=255)
                                                                                                                         tGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTCTCGGTTAGTCCACCCGATGc                               >  2:4631119/1‑151 (MQ=255)
                                                                                                                         gtccgggcggcgctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGc                               >  2:589285‑M1/30‑151 (MQ=255)
                                                                                                                           aCATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCtt                             >  2:2774074/1‑151 (MQ=255)
                                                                                                                                    gctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCg                    <  1:9827014‑M1/133‑1 (MQ=255)
                                                                                                                                     ctcaacataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGc                   <  1:3504331‑M1/134‑1 (MQ=255)
                                                                                                                                        tttAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAAc                <  1:9304009/151‑1 (MQ=255)
                                                                                                                                          cataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGt              >  2:1512755‑M1/13‑151 (MQ=255)
                                                                                                                                           ataaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGGTAGTCCACCCGATGCTTCAACACCCGCAACGTa             <  2:2019970‑M1/140‑1 (MQ=255)
                                                                                                                                            taaggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTAc            >  1:2551084‑M1/11‑151 (MQ=255)
                                                                                                                                            aCATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTATCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTAc            >  2:10375357/1‑151 (MQ=255)
                                                                                                                                             cATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACg           >  2:10847875/1‑151 (MQ=255)
                                                                                                                                               ggccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGaa         <  2:884149‑M1/144‑1 (MQ=255)
                                                                                                                                                gccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAAt        >  2:8461061‑M1/7‑151 (MQ=255)
                                                                                                                                                 ccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAATCCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATg       <  2:3775168‑M1/146‑1 (MQ=255)
                                                                                                                                                 ccgagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATg       <  2:1661549‑M1/146‑1 (MQ=255)
                                                                                                                                                   gagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATGTc     <  2:6503041‑M1/148‑1 (MQ=255)
                                                                                                                                                   gagCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATGTc     >  1:3001623‑M1/4‑151 (MQ=255)
                                                                                                                                                    agCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATGTcc    <  1:1644494‑M1/149‑1 (MQ=255)
                                                                                                                                                     gCATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATGTCCg   <  1:6049587‑M1/150‑1 (MQ=255)
                                                                                                                                                      |                                                                                                                                                      
TTCATTGTCAGTCACCTCATTCAAGGACTTGTCATGAACACGAAGGACATGGCCCGTTGAGAGAGTGGACGCCAGAAGCGGGTTTGTCGAATCAGTGTCTTACAAGGCTCATGAACATTTCTGACATAGCATCTGGTTTAACATAATATACATTATGCGAAGCCTTAAGCATTTCCAGGCGGCCAGGATCCACGAAAAACCCCGGAGATCGCTCTACCGGGGTTTCCTTGCTTTCTAGCCAGTGAAGCCTTATCGGTTAGTCCACCCGATGCTTCAACACCCGCAACGTACGAATGTCCGA  >  NC_008463/3175547‑3175847

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.