Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084634,616,4390CG29.9% 235.9 / 56.3 157intergenic (‑159/+43)hda/PA14_RS21180DnaA regulatory inactivator Hda/DUF2066 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base C (54/56);  new base G (47/0);  total (101/56)
Fisher's exact test for biased strand distribution p-value = 1.02e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 172 total aligned reads displayed.

GGGCGGACAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAA  >  NC_008463/4616289‑4616589
                                                                                                                                                        |                                                                                                                                                              
 ggCGGACAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTcgc‑gc‑g                                                                                                                                                              <  1:2783261/151‑1 (MQ=255)
    ggACAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCg                                                                                                                                                          <  1:6432268/151‑1 (MQ=255)
    ggACAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCg                                                                                                                                                          >  2:10717066/1‑151 (MQ=255)
      aCAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCggg                                                                                                                                                        >  1:2921177/1‑150 (MQ=255)
      aCAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCCGc                                                                                                                                                        >  2:8365618/1‑151 (MQ=255)
        aaTCCGAAAACGCCGCAGGAGTCACCGTATAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGccc                                                                                                                                                      <  1:8419999/151‑1 (MQ=255)
        aaTCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGccc                                                                                                                                                      <  2:8963148/151‑1 (MQ=255)
        aaTCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGCGGg‑g‑ccggcc                                                                                                                                                       >  1:2107438/1‑151 (MQ=255)
        aaTCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGccc                                                                                                                                                      <  1:9737975/151‑1 (MQ=255)
        aaTCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGccc                                                                                                                                                      <  1:4814305/151‑1 (MQ=255)
        aaTCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGccc                                                                                                                                                      >  2:1557242/1‑151 (MQ=255)
          tCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑Cccgcccgc                                                                                                                                                    >  2:4257653/1‑151 (MQ=255)
           ccGAAACCGCCGCAGGAGTCACCGTAACGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑t                                                                                                                                                  <  2:7411728/151‑1 (MQ=255)
           ccGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑t                                                                                                                                                  <  1:9430592/151‑1 (MQ=255)
            cGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGGCCGcac                                                                                                                                                  >  2:9599798/1‑149 (MQ=255)
             gAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCGGCCCGC‑Gcc                                                                                                                                                >  1:2245703/1‑151 (MQ=255)
             gAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGGCCGC‑tgc                                                                                                                                                >  1:6953900/1‑149 (MQ=255)
             gAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑Tcc                                                                                                                                                <  1:4725364/151‑1 (MQ=255)
              aaaaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑g‑cccgcccccaccc                                                                                                                                                >  1:2651766/1‑145 (MQ=255)
              aaaaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCg                                                                                                                                               <  1:9005854/151‑1 (MQ=255)
               aaaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCACAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCCGCCCGC‑GCCgg                                                                                                                                              >  2:5645257/1‑150 (MQ=255)
                aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCGC‑Gcccgt                                                                                                                                             >  2:6030392/1‑148 (MQ=255)
                aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GCGG‑CCGGccccgccggt                                                                                                                                               >  2:5946567/1‑144 (MQ=255)
                aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGtt                                                                                                                                             <  2:8960860/151‑1 (MQ=255)
                 aCGCCGCAGGAGTCACCGTAAAGGCTGCACAGTTTATACGCCTCGGCAAGGCCGCACAAGGCGCAACTAGGCAAGCAACAGCAACGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTg                                                                                                                                            <  2:917200/151‑1 (MQ=255)
                  cgccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGc                                                                                                                                           <  2:6582171/151‑1 (MQ=255)
                    ccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑Acccgttcat                                                                                                                                         >  2:5546442/1‑144 (MQ=255)
                     cgcAGGAGTCACCGTAAAGGCTGCATAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCTGAGCAGCGGCC‑GGTCGC‑GG‑G‑CCGGGCCGC‑TCGGtgggctg                                                                                                                                        >  1:6930954/1‑145 (MQ=255)
                      gcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCCGCCCCC‑GCCGGTGC‑C‑TAg                                                                                                                                     >  2:2704262/1‑151 (MQ=255)
                       cAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAgg                                                                                                                                    <  1:5741553/151‑1 (MQ=255)
                        aGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑GCCCGTGC‑A‑AAggg                                                                                                                                   >  2:5064635/1‑150 (MQ=255)
                         ggAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCACTGGTTTGCCGATTGCCGAGGCTCCGTGCCCTGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TCGGAg                                                                                                                                  <  2:4594915/151‑1 (MQ=255)
                          gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCCC‑ACCCTTGC‑C‑TAGGTGc                                                                                                                                 >  2:6451763/1‑151 (MQ=255)
                          gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGc                                                                                                                                 <  1:1958231/151‑1 (MQ=255)
                          gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGc                                                                                                                                 <  2:6504452/151‑1 (MQ=255)
                          gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGGTGC‑A‑TAGGAGc                                                                                                                                 <  2:523283/151‑1 (MQ=255)
                              ccccGTAACGCCTCCACAGTTAATCCCCCTCCGCAACCCCCCACAATCACCACCTAGCCAAGCAAAACCAACGCTTTGCCGATAGCCGACGCTCCTTGCCCAGACCATCCCCC‑GCACGC‑GC‑G‑CCGCCCCGC‑TCCGTTGC‑A‑TAGGAGCGGAt                                                                                                                             <  2:9894527/149‑1 (MQ=255)
                              cACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGGCCCC‑CCCGGTGC‑A‑CAGGAGCGGag                                                                                                                             >  1:3890383/1‑150 (MQ=255)
                               aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCA‑GGTCGC‑GG‑G‑GCCGCGCGG‑TCCGTTGT‑G‑TAGGGGCggttg                                                                                                                            >  1:5917792/1‑148 (MQ=255)
                                ccGTAAAGGCTGCAAAGTTTATACTCCTCGGCAAGGCCGCACAATGCGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCg                                                                                                                           <  1:8908995/151‑1 (MQ=255)
                                ccGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑ACCGGTGC‑A‑TATGAGCgggtag                                                                                                                           >  2:5227056/1‑147 (MQ=255)
                                 cGTAAAGGCTGCAAAGTTTATCCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCgg                                                                                                                          <  2:7873148/151‑1 (MQ=255)
                                 cGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCGC‑GCCGGTGG‑A‑GATGAGCGGATCgg                                                                                                                          >  1:4277802/1‑151 (MQ=255)
                                 cGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCGC‑GCCCGTGC‑C‑TAGGAGCGGATggg                                                                                                                          >  2:3705137/1‑151 (MQ=255)
                                      aGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCCC‑GACGTTGC‑A‑TATGAGCGGATCGgggcg‑c                                                                                                                    >  2:7045500/1‑151 (MQ=255)
                                       ggCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAACTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑cc                                                                                                                   <  2:6347016/151‑1 (MQ=255)
                                        gCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCg                                                                                                                  <  2:2390714/151‑1 (MQ=255)
                                        gCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGGTGG‑C‑TAGGGGCGGATCGGCGCG‑CCg                                                                                                                  >  2:10848346/1‑151 (MQ=255)
                                        gCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑GCCGGTGC‑A‑AATGAGCGGATCGGCGCG‑ccc                                                                                                                  >  2:10848311/1‑150 (MQ=255)
                                        gCTGCAAAGTTGATCCGCCTCGGCAAGGCCGCACCATGAGCAACTACGCAACCAAAATCAAAGGTTTGCCGATAGCCGAGGCACCTGGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCg                                                                                                                  <  1:1990535/151‑1 (MQ=255)
                                        gCTGCAAACTTTATCCGCCTCGGCAAGGCCGCACAATGCGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCg                                                                                                                  <  1:7590839/151‑1 (MQ=255)
                                               aGTTTATACGCCTCGGCACGGCAGCACAATGTGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGGCCCC‑GACCGTGC‑A‑TAGGAACCGCACGGCGCG‑CCGACCCAcg                                                                                                           >  2:5098203/1‑150 (MQ=255)
                                                 tttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCGC‑GCCGGTGC‑A‑GAGGTGCGGATACGCGCG‑CCGCCACACAGc                                                                                                         >  2:6683473/1‑151 (MQ=255)
                                                  ttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCGGCCCGC‑GCCCTTGG‑A‑GAGGAGCGGGTCGGCGCG‑CCGCCACACTggc                                                                                                        >  2:9671910/1‑149 (MQ=255)
                                                     taCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑GCCCGCCCCCC‑ACCGTT‑C‑C‑GAAGAGGGGGACGGCGCG‑CCGACACACAGcccac                                                                                                     >  1:6408704/1‑148 (MQ=255)
                                                      aCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCCGCCCGC‑GGCCGTGG‑A‑GAGGGGCGGGGCGGCGGG‑CCGGCGCACAGCCAGCg                                                                                                    >  1:340820/1‑151 (MQ=255)
                                                         ccTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑ACCGGTGG‑A‑TTTGAGCCGGTCGGCGCG‑CCGACTGAAAGCCCGCggca                                                                                                 >  1:7281035/1‑149 (MQ=255)
                                                          cTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAACGGATCGGCGCG‑CCGTCTCACTGCCAGCGGaaa                                                                                                >  1:4530445/1‑151 (MQ=255)
                                                             ggCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑GCCGGCCGC‑GCCGGTGC‑A‑TGTGTGGGGGGGGGCGCG‑CCCACGCCCAGCCACCGGACAttg                                                                                             >  1:9030424/1‑150 (MQ=255)
                                                              gCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCCGCCCGC‑GACGGTGG‑C‑TCTGAGCGGATAGGCGCG‑CCGCCCCACAGCCCCCGGacaatac                                                                                            >  2:10325634/1‑145 (MQ=255)
                                                                       cacaATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑GCCGGTGG‑C‑TAGGAGCGGAGGGGGGCG‑CCGCCTCCCTGCCCGGGGCCAATGA‑GTTGGggc‑g                                                                                 >  2:7601088/1‑151 (MQ=255)
                                                                        acaATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCCC‑GCCCGTGC‑G‑TTGGGGCGGGTGGGCGCG‑CCCACGCACGGGCAGCGGGAAATAA‑GGTGGgtc‑gc                                                                                >  2:2809493/1‑150 (MQ=255)
                                                                             gAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCCGCCCCC‑ACCGGTGG‑A‑AAGGAGCGGATGGGCGCG‑GCGACGAACCGCCCCCGGGAATTAA‑ATTTGGtc‑gaccacg                                                                           >  1:8198046/1‑151 (MQ=255)
                                                                                  aCTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑ACCGTTGG‑A‑TAGGGGCGGGTAGGGGCG‑CCCACGCACATCCCCCCGAAATTAC‑TTTGGGAC‑CACGACCGCAcc                                                                      >  2:7006211/1‑151 (MQ=255)
                                                                                     aGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCGGCCCGC‑GCCGGTGG‑C‑TAGGTGCGGGTGGGCGCG‑CCGCCACACATCCAGCGGGCAATAA‑GGTGGGGC‑GCCGACGGGCccgcc                                                                   >  2:6726635/1‑151 (MQ=255)
                                                                                     aGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGGTGC‑A‑AATGAGCGGATAGGGGCG‑CCGACTCAAAGCCCCCGGAAAATCA‑AGTGGGAC‑GTCCACGGCAccgcc                                                                   >  2:6811072/1‑151 (MQ=255)
                                                                                     aGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCCC‑CCCCGGGG‑C‑GAGGCGCCGAACGGCCCG‑CCCCCCCACGGCCCGCCGAAAATCA‑CTTGGGTC‑GCCGCAGGCAccccc                                                                   >  2:4978400/1‑151 (MQ=255)
                                                                                     aGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑C‑CCCGCCCGC‑GCCCGTGC‑A‑TAGTAGCGGAGCCGCGCC‑CCGACGCACATCCCACGCTAAATGA‑GTTGGGGC‑GACCACgggaacccc                                                                   >  2:4980779/1‑144 (MQ=255)
                                                                                             aaaaTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCCCGCCCGGTG‑‑A‑TAGGAGCGGGTCGGGGCG‑CCCACGCACAGCCCCCGGCAAATAA‑GTTGGGGC‑GACGACGGCACCCCCGCGCCggg                                                           >  2:7743743/1‑151 (MQ=255)
                                                                                                  cAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGCCCGC‑GCCGGTGG‑G‑AATGGGCCGATAGGCGCG‑CCGACAGACAGGCCACGGCAAATAA‑TTGGGGGC‑GACGACGGCAACGCCCCGCGGGgcgcag                                                      >  2:3077458/1‑149 (MQ=255)
                                                                                                  cAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑GCCGCCCGC‑GACCGTGG‑A‑AAGGAGGGGGTCGGCGCG‑CCCCCTCACTGGCAGACGCAAATGA‑CTTTGGTA‑GACGGACGCACCCCCGCGCGGGgcgcgg                                                      >  2:3083145/1‑149 (MQ=255)
                                                                                                    ccggTTCGCCTATCGCCGCGCCTCCTCCCCCACA‑CATCCGCCGGGGCGC‑GC‑G‑CCGCCCCGC‑TCGTGTGA‑A‑TTGGTGCGTCTCGGCGCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCg                                                    <  1:7262133/149‑1 (MQ=255)
                                                                                                    aaGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCGGCCCCC‑TCCGGTGG‑A‑TAGGAGCGGATCGGCGCG‑CCCACGCACAGCCCGCCGAACATAA‑GTTTGGGC‑GGAGACGGCACCCCCGCGCGGGGCgcggcg                                                    >  2:9695719/1‑151 (MQ=255)
                                                                                                     aGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCCGGCCGC‑CCCGGTGG‑G‑TATGAGCGGAGAGGCGCG‑CCGGCTCACAGCCACGGGAAATAAA‑GTTGGGTC‑CTCGAGCGCACCCCCCCGCAGGGGGCTGCgg                                                   >  2:5020047/1‑151 (MQ=255)
                                                                                                      ggTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCCGCCCCC‑GCCCGTGG‑A‑AAGGAGCGGCTCGGCGCG‑CCCCCACACATCCCGCGGGAAATAA‑GGTTGGGC‑CACGACGGCACCCCCGCGCGGGGCGCGGCggg                                                  >  2:8642449/1‑151 (MQ=255)
                                                                                                         ttGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCGGGCCGC‑TCCCATGG‑A‑TAGGAGAGGATGGGGGCG‑CCGCCGAAAAGCCAGCCGGAAATAA‑GTTGGGGC‑GACGTCGGCACACCCGCCCGGGGGGGTGCGGGcgg                                               >  2:3612321/1‑149 (MQ=255)
                                                                                                          tGCCGAGCGCCGTGGCCCCTGCCCCAGCGCCCGGCCC‑GGCCGC‑GC‑G‑CCGCCCCGC‑T‑CGGTGC‑ATTGGGCGGGGAGCGGCGCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTgg                                              <  2:9655839/151‑1 (MQ=255)
                                                                                                           gCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCCGGCCGC‑GCCCCTGG‑A‑AAGGTGCGGATCAGGGCGCCCGCGAAAGGGCCACCGGAAATAC‑‑GTTGGGGA‑GACGACGGCCCCCCCCCGGGGGGGGCGGCgggggggg                                             >  2:1905494/1‑146 (MQ=255)
                                                                                                               aTAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCGGGCCGG‑GCCCTTGG‑C‑TAGGAGGGGCTCGGGGCG‑CCCACACACAGACAGCGGAACATCA‑GGTGGGGC‑GCCGACCGCCCCCCCGCGCGGGGCGGTGCGGGCTGGGCGGa                                         >  2:5257116/1‑151 (MQ=255)
                                                                                                               aTAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCCC‑TCCCGTGC‑A‑AAGGAGCGGATAGGGGCG‑CCCCCTCACAACCCCCCGAAAATAA‑GGTGGGAA‑GACGAACGCACCCCCGCGCGGGGCGCAGCGGGGGGGcccgg                                         >  2:5266233/1‑148 (MQ=255)
                                                                                                                     gAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑GCCCGGTC‑A‑AAAGAGCGGGAGGGCGCG‑CCGGCGCACTGCCCGCGGAAAATGA‑GGTTGGGC‑GGCGACGGCCCCCCCCCGCGGGGGGCGGCGGGGGGGCCGGGGGCCTc                                   >  2:2481465/1‑151 (MQ=255)
                                                                                                                     gAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCCGGCCGC‑GGCGGTGC‑A‑AATGGTCCGCTCGGCGCG‑CCGACAACCATCCAGCGGGCATTAA‑GTTGGGGA‑GACGACGGCACCGCCCCGGCGGGCGCGGCGGGCGGGCCGGAGGCATc                                   >  2:2481536/1‑151 (MQ=255)
                                                                                                                         cTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑CCCGCCCCC‑GCCCGTGG‑A‑GAGGGGCCGATCGGCGCG‑CCCCCACACAGCCCCCCGACAAGAA‑GGTGGGAC‑CACGACCGCCCCCCCCCGCAGGGGGCGGCGGGGTGGGCGGAGGCAACCCGc                               >  2:339386/1‑151 (MQ=255)
                                                                                                                          tCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GG‑G‑GCGGGCCCC‑GCCCGTGC‑G‑TAGGGGCGGGTCGGCGCG‑CCCACACACAGCCCCCGGAAAATCAGGTTGGGAC‑G‑CGACGGCCCCCCCCCGCCGGGCGGGGGGGGGGGGCCGGGGGCATCCcgcg                              >  2:5810278/1‑151 (MQ=255)
                                                                                                                          tCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑GCGGCCCCC‑GCCCGTGG‑A‑TAGGGGCGGAGCGGCGCG‑CCGCCCCACGGCCAGCGGGAAATAA‑GGTGGGGC‑GACGAAGGCACCGCCCCGCAGGGCGCGGCCGGGGGGGCGGAGGCAGcccccg                              >  2:4362141/1‑147 (MQ=255)
                                                                                                                            cTTCCCCAGCCCAGCGGGC‑GGGCGC‑GC‑G‑CGGCCCCGC‑TCGTTTGA‑T‑TTGGCGCGGCGCGGCCCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGt                            <  1:10042888/151‑1 (MQ=255)
                                                                                                                              cccccAGACCATCGGCG‑GGTCGC‑GC‑G‑CCGCCCCGC‑CCCGTTGC‑A‑TCGCCGCGCTGCGCCCCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTAc                          <  1:1735275/149‑1 (MQ=255)
                                                                                                                                cccAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCAGTTGC‑A‑GAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAAATGA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCGGCGGGCTGGCCGGAGGCATCCAGCGGTACGc                        >  2:4303873/1‑151 (MQ=255)
                                                                                                                                  cAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCCGTGC‑C‑TAGGCGGGGCGGGGGGGC‑CCGGCAGACGGCCAGCGGACATTTA‑GGTTGGACGGACGCCGGC‑CCCCCGCGCTGGGCGCGGCGGGGGGGGCGGCGGCCACCAGGGGTTCgggg                      >  2:6935731/1‑148 (MQ=255)
                                                                                                                                    ccccgcgggCG‑GGGCGC‑GC‑G‑CCCCCCCGC‑GCCTTGCC‑A‑TGGGCGCGGCGCCCCCCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTc                    <  1:8571366/144‑1 (MQ=255)
                                                                                                                                        atgggCG‑GGCCGC‑GC‑G‑CCGGCCCGC‑CCGGTTTC‑A‑TTGGAGCGGAGCGGCGCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGcc                <  2:1434242/148‑1 (MQ=255)
                                                                                                                                         cgggCG‑GGCCGC‑CC‑G‑CCGCCCCGC‑‑CCGTTGCAA‑GTGCCGCTGAGCGCCGCC‑CCGACTCACGGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCg               <  2:4375816/149‑1 (MQ=255)
                                                                                                                                               cgggccc‑gc‑g‑cCGCCCCGC‑TCGGTGGC‑T‑TTGGCGGGGATCGGCCCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGAtt          <  1:4393644/145‑1 (MQ=255)
                                                                                                                                                 gccgc‑gc‑g‑CCGGCCCGC‑TCGGTTCC‑T‑TTGGTGCGTCGCGGCGCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTc        <  1:3073139/149‑1 (MQ=255)
                                                                                                                                                   cgc‑gc‑g‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt      >  1:1060176/1‑151 (MQ=255)
                                                                                                                                                    gc‑gc‑g‑cCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGACATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTg     >  2:5874364/1‑151 (MQ=255)
                                                                                                                                                       gc‑g‑cCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GTCGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCa   >  1:3135144/1‑151 (MQ=255)
                                                                                                                                                       gc‑g‑cCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCa   >  2:8460075/1‑151 (MQ=255)
                                                                                                                                                       gc‑g‑cCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCa   >  1:8966817/1‑151 (MQ=255)
                                                                                                                                                       cc‑g‑ccgcCCCGC‑TCGGTTGA‑T‑TCGGGGCGCAGCGGCGCC‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCa   <  2:2107438/150‑1 (MQ=255)
                                                                                                                                                        |                                                                                                                                                              
GGGCGGACAATCCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCC‑GGTCGC‑GC‑G‑CCGGCCCGC‑TCCGTTGC‑A‑TAGGAGCGGATCGGCGCG‑CCGACTCACTGCCAGCGGAAATTCA‑GTTGGGAC‑GACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAA  >  NC_008463/4616289‑4616589

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑