| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_008463 | 2,855,256 | 0 | A | G | 31.7% | 610.1 / inf | 364 | N2230S (AAC→AGC) | PA14_RS13370 | hemagglutinin repeat‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (137/111); new base G (58/57); total (195/169) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.29e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.28e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 369 total aligned reads displayed.
ACCTTCGCGCCGACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGGCGGCTCGACAGCCA > NC_008463/2855106‑2855406 | cTTCGCGCCGACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAAcc > 1:4683170/1‑151 (MQ=35) cgcgCCGACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACcgcg > 2:4392176/1‑151 (MQ=33) cGACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGACTGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCggcggc < 1:1026906/151‑1 (MQ=14) gACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCa < 2:5753466/151‑1 (MQ=31) cacGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAg > 2:7898294/1‑151 (MQ=31) cGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGt > 2:5253401/1‑151 (MQ=31) tcTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAAAGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGACGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGTCGGCAAGGTc > 2:9070550/2‑151 (MQ=255) gCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTc < 1:1415712/151‑1 (MQ=14) gCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCAGggcggcgcgctg < 1:3281683/151‑7 (MQ=9) cGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATc < 2:9765081/151‑1 (MQ=14) cGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATc < 1:6904465/151‑1 (MQ=31) gACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTCTCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGAATTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCACCTGGACAACCGCGGCGGCAAGGTCATCg > 2:7094032/1‑151 (MQ=9) gACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCg < 1:2666063/151‑1 (MQ=14) gACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCg > 1:4457363/1‑151 (MQ=14) acaacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCgg < 1:2018385/151‑1 (MQ=14) acaacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTC‑ACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGc < 1:10632047/151‑1 (MQ=14) caacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGc > 1:9179105/1‑151 (MQ=31) caacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGc > 2:8525343/1‑151 (MQ=31) caacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGc < 1:9456829/151‑1 (MQ=31) aacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCg > 1:2565126/1‑151 (MQ=14) aacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCg < 1:2992133/151‑1 (MQ=31) aacaGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCg > 1:4890351/1‑151 (MQ=31) cAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCg < 1:5834105/151‑1 (MQ=31) aGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCgg < 2:3855145/151‑1 (MQ=14) tCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGcc < 1:4636779/151‑1 (MQ=31) tCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGcc < 2:2280768/151‑1 (MQ=31) ccGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCt < 2:4963533/151‑1 (MQ=31) cGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTg > 1:1369989/1‑151 (MQ=14) gggCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTgc < 1:1957820/151‑1 (MQ=31) ggCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTgcg < 2:1914324/151‑1 (MQ=14) ggCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTgcg < 2:10842726/151‑1 (MQ=14) gCTGATCGCCGCGAATGGCGGCATCGCTATCGTGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTgcgc > 1:5224681/1‑151 (MQ=14) gCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTgcgc > 2:7266773/1‑151 (MQ=31) cTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGcc > 1:168981/1‑151 (MQ=31) cTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGcc > 2:3664135/1‑151 (MQ=31) tGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCt < 1:7403642/151‑1 (MQ=31) gccgcGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCg < 1:6317885/151‑1 (MQ=14) cgcgAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTg > 2:9195399/1‑151 (MQ=31) aaTGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAgc > 1:3875075/1‑151 (MQ=31) ggcggcATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGcc > 2:8598565/1‑151 (MQ=31) gcggcATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCACGGTCAGCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCct > 2:10113731/1‑151 (MQ=14) ggcATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCctgc > 2:2564598/1‑151 (MQ=31) gcATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCctgct < 1:23629/151‑1 (MQ=11) ccGCGCCGGCGAGAGTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGt < 2:5104688/151‑1 (MQ=11) cgcCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCAACGTGCAGCGCCTGCTGAACCAGGCCGTGGGGGTGCTGGCCGGGCGTGAc > 2:4561176/1‑151 (MQ=9) ccGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACgg > 2:1726097/1‑151 (MQ=31) ccGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACgg > 1:2110663/1‑151 (MQ=31) cGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGCCAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCCCTGGGGTGCTGGCCGGGCGTGACGGc > 1:1074560/1‑151 (MQ=9) cGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGc < 1:9396096/151‑1 (MQ=31) ggCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGcc > 1:7249267/1‑151 (MQ=31) gCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCt < 1:2719278/151‑1 (MQ=31) cGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTg > 1:7755347/1‑151 (MQ=31) cGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTg > 2:5886709/1‑151 (MQ=31) gagaTTTCCAGCACCTCGATGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGa > 1:7095097/1‑151 (MQ=14) agaTTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAg > 1:816367/1‑151 (MQ=14) agaTTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAg > 1:6231801/1‑151 (MQ=14) aTTTCCAGCACCTCGCAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGcc < 1:764516/151‑1 (MQ=18) tttCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCt > 2:8080421/1‑151 (MQ=33) tCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTgg < 1:9877916/151‑1 (MQ=33) ccAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGa > 2:4822280/1‑151 (MQ=18) cAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAc < 2:10752734/151‑1 (MQ=33) cAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAc < 2:10300376/151‑1 (MQ=33) cAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAc > 1:3185327/1‑151 (MQ=33) aGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAcg < 1:3780224/151‑1 (MQ=18) cACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAcggc > 1:9686680/1‑151 (MQ=18) aCCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAcggcg < 2:6349074/151‑1 (MQ=18) aCCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAcggcg > 2:6654762/1‑151 (MQ=33) ccTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGAcggcgg > 1:4772022/1‑151 (MQ=33) cTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACggcggc < 2:8261902/151‑1 (MQ=33) cTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACggcggc < 2:4111926/151‑1 (MQ=33) cTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACggcggc < 1:8758845/151‑1 (MQ=33) gAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGaa < 2:3011768/151‑1 (MQ=33) aGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACt < 2:9463981/151‑1 (MQ=33) ggTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTg < 1:435592/151‑1 (MQ=33) gTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGt > 2:2752773/1‑151 (MQ=33) ccGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCaa > 2:3455101/1‑151 (MQ=18) ccGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCaa > 1:5919993/1‑151 (MQ=33) cGTGAACGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAac > 2:3794640/1‑151 (MQ=18) gTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacg > 1:1242716/1‑151 (MQ=33) gAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggc < 1:7996150/151‑1 (MQ=33) aaCGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcg < 1:8624249/151‑1 (MQ=18) aaCGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcg < 1:1924907/151‑1 (MQ=18) aaCGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcg > 2:5705236/1‑151 (MQ=33) aCGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcga > 1:5490982/1‑151 (MQ=33) cGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgac < 2:5388463/151‑1 (MQ=18) cGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgac < 1:5072876/151‑1 (MQ=18) cGCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgac < 2:2048937/151‑1 (MQ=18) cGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgac < 1:10098408/151‑1 (MQ=33) gCCCGCGAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgacg < 2:4734062/151‑1 (MQ=18) cccGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgacgg < 1:2484267/151‑1 (MQ=33) cccGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgacgg < 2:8763740/151‑1 (MQ=33) ccGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAacggcgacggc < 2:4469145/151‑1 (MQ=33) gcgAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGAcggcgg < 1:655969/151‑1 (MQ=33) gcgAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGAcggcgg < 1:6749345/151‑1 (MQ=33) gAGCAACTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACggcgggc < 1:5760677/151‑1 (MQ=25) gAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACggcgggc > 2:3515669/1‑151 (MQ=35) aaCTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGGCGGCt > 2:1367969/1‑151 (MQ=25) aCTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGGCGGCTc > 1:1502014/1‑151 (MQ=35) cTGGACAGCCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGGCGGCTCg > 2:6093160/1‑151 (MQ=25) ggACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGGCGGCTCGAc > 1:7883751/1‑151 (MQ=35) | ACCTTCGCGCCGACACGCTCGACAACAGCCAGTCCGGGCTGATCGCCGCGAATGGCGGCATCGCTATCGAGGCGCGGCAGGTCGACAACCGCGCCGGCGAGATTTCCAGCACCTCGAAGGTCGCCGTGAACGCCCGCGAGCAACTGGACAACCGCGGCGGCAAGGTCATCGGCGACAGCGGCCTGCGCCTCACCGTGCAGCGCCTGCTGAACCAGGCCAAGGGGGTGCTGGCCGGGCGTGACGGCCTGAGCCTGGACGGCGGCGAACTGTTCAACGGCGACGGCGGGCGGCTCGACAGCCA > NC_008463/2855106‑2855406 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |