| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_008463 | 6,206,069 | 0 | T | G | 48.7% | 618.0 / inf | 692 | intergenic (‑174/+23) | PA14_RS28345/PA14_RS28350 | type VI secretion system tip protein VgrG/Hcp family type VI secretion system effector |
| Reads supporting (aligned to +/- strand): ref base T (184/171); new base G (161/176); total (345/347) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.01e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 696 total aligned reads displayed.
GCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCGGGTCCT > NC_008463/6205919‑6206219 | tcgattGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCGGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTg > 2:2738039/1‑151 (MQ=14) cctgcctgGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTc < 1:8203332/151‑1 (MQ=31) cctgcctgGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTc < 1:1704386/151‑1 (MQ=31) tgcctgGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTcgc > 1:1102304/1‑151 (MQ=32) gcgcGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCCTCGACCCGGCGCGGGCTTTCCGGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCa < 2:3761278/151‑1 (MQ=9) gCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGc < 2:8223645/151‑1 (MQ=14) cGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCg < 2:2397431/151‑1 (MQ=35) gagaCAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGa > 2:5047921/1‑151 (MQ=14) agaCAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGAc > 1:9231555/1‑151 (MQ=35) agaCAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGAc > 1:2291489/1‑151 (MQ=35) gaCAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGAcc > 2:5793671/1‑151 (MQ=14) aCAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCg > 1:3349185/1‑151 (MQ=14) aaGGGCGCGCAGGCTCGATCGGAAGCTGCCTACACCAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCggg < 2:3179512/151‑1 (MQ=25) gggCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGa > 2:2319890/1‑151 (MQ=35) gggCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGa < 2:1409075/151‑1 (MQ=14) ggCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAg > 2:5982744/1‑151 (MQ=14) cgcgcAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAgcg > 1:9101918/1‑151 (MQ=35) cgcgcAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAgcg < 1:9901625/151‑1 (MQ=14) cgcgcAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAgcg < 2:9743877/151‑1 (MQ=14) gcgcAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAgcgc < 2:5327435/151‑1 (MQ=14) cAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAg > 1:8748917/1‑151 (MQ=14) ggCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCGGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAgtc > 2:5473164/1‑151 (MQ=25) cTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAgtcgt < 1:7550585/151‑1 (MQ=14) cGATCGGAAGCTGCCTACAACAACGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGtcgtcg < 1:6462161/151‑1 (MQ=25) gATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCgg > 1:10012456/1‑151 (MQ=35) aTCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGa > 2:923754/1‑151 (MQ=35) aTCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGa > 1:10508929/1‑151 (MQ=14) tCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAg > 1:9421266/1‑151 (MQ=35) cGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGc > 1:9601524/1‑151 (MQ=14) ggAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGcc > 2:8777530/1‑151 (MQ=35) ggAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGcc < 2:10315064/151‑1 (MQ=35) ggAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGcc < 1:6706611/151‑1 (MQ=35) ggAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGcc < 1:4146306/151‑1 (MQ=14) ggAAGCTGCCAACAACTAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGcc < 2:6783129/151‑1 (MQ=25) gAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCg > 1:10252321/1‑151 (MQ=35) gAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCg < 2:1883259/151‑1 (MQ=14) gAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCg < 2:749667/151‑1 (MQ=14) aGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGa < 2:4342213/151‑1 (MQ=35) aGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGa > 1:5708639/1‑151 (MQ=35) cTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAgg > 2:1137095/1‑151 (MQ=14) gCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTg > 1:1477513/1‑151 (MQ=35) gCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTg < 1:2960717/151‑1 (MQ=35) ccTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGc > 1:7157191/1‑151 (MQ=14) cTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGTCCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGcc > 1:899225/1‑151 (MQ=25) tACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCg > 1:9772459/1‑151 (MQ=14) tACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGCCCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCg > 2:9379312/1‑151 (MQ=9) caacaaAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGga > 1:5531822/1‑151 (MQ=35) aacaaAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGgag < 1:1852752/151‑1 (MQ=14) aacaaAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGgag < 1:2714954/151‑1 (MQ=14) aaaGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACt > 2:7821600/1‑151 (MQ=35) aaGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACtt < 1:2422138/151‑1 (MQ=14) aGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTc > 1:1265260/1‑151 (MQ=35) gCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTgg < 2:7700572/151‑1 (MQ=14) cATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTggg > 1:6255890/1‑151 (MQ=35) tCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTc < 1:6619850/151‑1 (MQ=35) gACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCTTCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCATCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCa > 2:624248/1‑151 (MQ=25) gACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCa > 1:733321/1‑151 (MQ=14) gACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCa > 1:7453553/1‑151 (MQ=14) cccGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCCGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAgg < 2:4504798/151‑1 (MQ=14) ggCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGa > 1:9998059/1‑151 (MQ=35) ggCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGa > 1:3157865/1‑151 (MQ=14) gggCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTg > 1:6169878/1‑151 (MQ=35) gggCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTg > 1:4919311/1‑151 (MQ=35) ggCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGc < 1:7005489/151‑1 (MQ=35) ggCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGc < 2:4156338/151‑1 (MQ=14) gCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCGTGCg > 2:2616762/1‑151 (MQ=14) ttCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTa < 1:504821/151‑1 (MQ=14) ccTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAgg < 2:4924582/151‑1 (MQ=14) ggCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCTGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGa < 2:10745823/151‑1 (MQ=25) ggCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGa < 2:4772781/151‑1 (MQ=14) cACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGt > 1:7990188/1‑151 (MQ=35) cACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTCGGTGAAGt > 2:9045424/1‑151 (MQ=14) cACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGt > 2:6891015/1‑151 (MQ=14) aCGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTg < 1:5278235/151‑1 (MQ=35) cGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGc > 1:1950698/1‑151 (MQ=14) gcgcTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCAc > 2:3352642/1‑151 (MQ=14) cgcTGTGGGTCATCGCGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACg < 2:8591812/151‑1 (MQ=25) tgtgGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGAGAAGTGCACGTCt < 2:9564539/151‑1 (MQ=25) tCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAgg < 2:7150711/151‑1 (MQ=35) gAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAggtgggt < 2:4614841/151‑1 (MQ=35) gAGGGCACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAggtgggt > 1:4614258/1‑151 (MQ=14) gCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAg < 2:10117724/151‑1 (MQ=35) cACGACGGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGCGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGt < 1:776299/151‑1 (MQ=14) acgacgGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCTACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTg < 2:5690433/151‑1 (MQ=25) acgacgGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTg < 2:5234550/151‑1 (MQ=14) cgacgGCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTgg < 2:10598995/151‑1 (MQ=14) ggCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGt > 2:7048693/1‑151 (MQ=35) ggCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGt < 1:8608817/151‑1 (MQ=14) ggCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGt > 1:1610569/1‑151 (MQ=14) gCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGAGGGTCCAGGTGATCTTGCGGTAGGGGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGtt > 1:8374531/1‑151 (MQ=25) gCCAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGtt < 1:2136500/151‑1 (MQ=14) ccAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTg < 2:2909126/151‑1 (MQ=35) cAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGc > 2:8129041/1‑151 (MQ=35) cAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGc > 2:8480538/1‑151 (MQ=35) cAGCGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGc < 2:6527196/151‑1 (MQ=14) cGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCg < 1:259406/151‑1 (MQ=35) cGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCg < 2:3644463/151‑1 (MQ=14) cGAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCg > 1:3526538/1‑151 (MQ=14) gAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCgg > 1:3825978/1‑151 (MQ=35) gAGGCGGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCgg < 1:3614454/151‑1 (MQ=14) | GCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTTTCCTGGCCACGGCGCTGTGGGTCATCGAGGGCACGACGGCCAGCGAGGCTGGCCGCGTGCGGCGGTCGCGGCTCAGCCGGCGACCGGGGAGCGCCAGTCGTCGGAGCCGGAGGTGCCGGAGACTTCGTGGGTCCAGGTGATCTTGCGGTAGGTGAAGTGCACGTCTTCCAGGTGGGTGAAGTGGGCGTTGCCCGGGTCCT > NC_008463/6205919‑6206219 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |