| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_008463 | 5,931,608 | (T)6→5 | intergenic (‑27/‑151) | PA14_RS27130 ← / → PA14_RS27135 | LysR family transcriptional regulator/MFS transporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_008463 | 5,931,603 | 0 | T | . | 99.8% | 2068.7 / ‑3.4 | 424 | intergenic (‑22/‑156) | PA14_RS27130/PA14_RS27135 | LysR family transcriptional regulator/MFS transporter |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base . (132/291); total (133/291) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.14e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 462 total aligned reads displayed.
GATTTCCTCCTCCAGCGCCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTATTTAGGTGTTTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCACCGTCCCCA > NC_008463/5931453‑5931748 | aTTTCCTCCTCCAGCGCCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTGtt > 2:8952353/1‑150 (MQ=255) gtcctcctccCGCGCCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTGtttt < 2:6274570/149‑1 (MQ=255) cctcctccAGCGCCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTGttttta < 2:7983430/150‑2 (MQ=255) ctcctccAGCGCCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTGtttttac < 1:922796/150‑3 (MQ=255) cgcCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATc < 2:4707573/150‑1 (MQ=255) cgcCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATc > 2:4877360/1‑150 (MQ=255) gcCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAAACg < 1:3766116/150‑1 (MQ=255) ccTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCgt > 2:2951490/1‑150 (MQ=255) cTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCgtg < 1:8610957/150‑1 (MQ=255) tGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCgtgt < 1:569555/150‑1 (MQ=255) ggATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTc < 2:2012670/150‑1 (MQ=255) aTCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGa < 2:2742597/150‑1 (MQ=255) aTCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGa > 2:8819185/1‑150 (MQ=255) tCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGAt < 1:4204054/150‑1 (MQ=255) ctgctgGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATc < 2:1187755/150‑1 (MQ=255) tgctgGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCa < 2:7896166/150‑1 (MQ=255) gctgGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCaa < 1:7506107/150‑1 (MQ=255) tgGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAata < 2:1299589/150‑1 (MQ=255) ggCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATCTCAATCGTGTCGAGCAatat > 2:9877505/1‑150 (MQ=255) ggCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatat < 2:10733817/150‑1 (MQ=255) gCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatata < 1:2335195/150‑1 (MQ=255) gCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatata < 1:1691330/150‑1 (MQ=255) cTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatatat > 1:2687241/1‑150 (MQ=255) cTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatatat < 1:6969962/150‑1 (MQ=255) cTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatatat < 2:7787125/150‑1 (MQ=255) cTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAatatat < 1:7996206/150‑1 (MQ=255) aaCGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTgg < 1:7619705/150‑1 (MQ=255) aaCGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTgg < 2:6710137/150‑1 (MQ=255) ggcTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCa < 2:3344081/150‑1 (MQ=255) gcTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCat < 2:6600190/150‑1 (MQ=255) cTGGGAGATCCCCTCGCGCTCGGCGGCGCGGCCGTAGTGCAGCTGCTCGGCGACGGCGATGAAATAGCGCTGGTGCCTGTGTTCCAACCGGACCATCCTA‑TTAGGTG‑TATTTACATATCAATCTTGTCGATCAATATATTGGAAATCata < 2:6083171/150‑1 (MQ=255) cTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCata < 2:8426483/150‑1 (MQ=255) gggAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCAtata < 2:932840/150‑1 (MQ=255) ggAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATaa < 1:3514819/150‑1 (MQ=255) ggAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATaa < 1:1052103/150‑1 (MQ=255) gagaTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATaaa < 1:10144152/150‑1 (MQ=255) agaTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATTTAAAc < 2:9724020/150‑1 (MQ=255) agaTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAAc < 2:11075973/150‑1 (MQ=255) agaTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAAc < 2:7061203/150‑1 (MQ=255) agaTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAAc < 2:10290483/150‑1 (MQ=255) gaTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAAcc < 1:6152482/150‑1 (MQ=255) aTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACct < 1:8180471/150‑1 (MQ=255) aTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACct < 1:8464381/150‑1 (MQ=255) aTCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACct < 1:10573434/150‑1 (MQ=255) tCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACcta > 1:10348417/1‑150 (MQ=255) ccccAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACctat < 2:6439220/150‑1 (MQ=255) aGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACctatctat < 1:1925649/150‑1 (MQ=255) ggCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCtata < 2:3892038/150‑1 (MQ=255) cTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCt < 1:4338282/150‑1 (MQ=255) ggcggcGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTg < 2:1057915/150‑1 (MQ=255) ggcggcGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTg > 2:2182447/1‑150 (MQ=255) gcggcgcggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCATTCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGc < 1:675475/150‑1 (MQ=255) cggcgcggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGcc < 2:10534653/150‑1 (MQ=255) cggcgcggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGcc > 1:9865478/1‑150 (MQ=255) ggcgcggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCca < 2:825210/150‑1 (MQ=255) gcggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACAt < 2:3110900/150‑1 (MQ=255) cggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATCTAAACCTATCTATATCCTTTGCCACATa > 2:4398848/1‑150 (MQ=255) ggcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATaa > 1:6493093/1‑150 (MQ=255) gcCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAAc > 2:5899701/1‑150 (MQ=255) cGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCATGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCt < 2:10924295/150‑1 (MQ=255) gAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTc < 2:2577976/150‑1 (MQ=255) gAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTc < 1:10002803/150‑1 (MQ=255) aaGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTcc < 2:4202254/150‑1 (MQ=255) aGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCca < 1:8860819/150‑1 (MQ=255) aGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCca < 2:9018072/150‑1 (MQ=255) gTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCcaa < 2:5380198/150‑1 (MQ=255) cAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCcaacaa < 1:2912584/150‑1 (MQ=255) ctcctcGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGa < 2:1770242/150‑1 (MQ=255) ctcctcGGAGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGa < 2:10031014/150‑1 (MQ=255) ctcGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGAccc > 1:5274962/1‑150 (MQ=255) tcGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGAcccc < 1:4930335/150‑1 (MQ=255) tcGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGAcccc < 2:8692607/150‑1 (MQ=255) cggcgacggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCt < 2:3699402/150‑1 (MQ=255) cggcgacggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCt < 2:7577547/150‑1 (MQ=255) cggcgacggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCt > 2:9604049/1‑150 (MQ=255) ggcgacggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCtt < 2:818402/150‑1 (MQ=255) acggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTcc < 1:4004286/150‑1 (MQ=255) cggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTccc < 1:9308606/150‑1 (MQ=255) ggcgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCt < 2:4794312/150‑1 (MQ=255) cgaTGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGa > 1:2409860/1‑150 (MQ=255) tGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTAGTCCCTGAAAt > 2:7352690/1‑150 (MQ=255) gcgcAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTg < 1:10450205/150‑1 (MQ=255) gcAGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACACCGACCCCTTGTCCCTGAAATCCAGGTGgc < 2:5580900/150‑1 (MQ=255) aGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGgcgc < 1:7817350/150‑1 (MQ=255) aGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGgcgc < 1:2249371/150‑1 (MQ=255) aGGTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGgcgc < 1:6238103/150‑1 (MQ=255) ggTGCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGACATCTTATAATCCTAGCTCTATCCTTTGCCAGATAACCTCCAACAACGTCCCCTTGTCCCTGAAATCCAGGTGGcgcg > 1:744847/1‑150 (MQ=255) gCCTGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGcc < 2:1834883/150‑1 (MQ=255) ccTGAGTTCCAAGCGGCCCCTCCGA‑TTAGGTG‑TTTTTACATATCAATCGAGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAAACTCCAACAACGACCCCTGGTCCCTGAAATCCAGGTGGCGCGGCCt > 2:3602344/1‑150 (MQ=255) tGAGTTCCAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCg > 2:1507182/1‑150 (MQ=255) cAAGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGcc > 1:6570805/1‑150 (MQ=255) aGCGGCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTg > 1:4751104/1‑150 (MQ=255) ggCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTc > 1:5940734/1‑150 (MQ=255) gCCCCTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCg > 1:727748/1‑150 (MQ=255) ccccTCCTA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGc < 2:109681/150‑1 (MQ=255) tcctA‑TTAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCAcc < 2:679911/150‑1 (MQ=255) tattAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCACCGTc > 2:5471052/3‑150 (MQ=255) attAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCACCGTcc > 1:3182135/2‑150 (MQ=255) ttAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCACCGTccc > 1:1290842/1‑150 (MQ=255) tAGGTG‑TTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCACCGTcccc < 1:10906811/150‑1 (MQ=255) | GATTTCCTCCTCCAGCGCCTGGATCTGCTGGCTCAACGGCGGCTGGGAGATCCCCAGGCGCTCGGCGGCGCGGCCGAAGTGCAGCTCCTCGGCGACGGCGATGAAATAGCGCAGGTGCCTGAGTTCCAAGCGGCCCCTCCTATTTAGGTGTTTTTTACATATCAATCGTGTCGATCAATATATTGGAAATCATATAAACCTATCTATATCCTTTGCCACATAACCTCCAACAACGACCCCTTGTCCCTGAAATCCAGGTGGCGCGGCCTCGTTGTGCCTGCTCGCCACCGTCCCCA > NC_008463/5931453‑5931748 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |