Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084634,616,4500TG30.5% 254.3 / 11.7 161intergenic (‑170/+32)hda/PA14_RS21180DnaA regulatory inactivator Hda/DUF2066 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (35/56);  new base G (38/2);  total (98/63)
Fisher's exact test for biased strand distribution p-value = 2.02e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 165 total aligned reads displayed.

CCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGC  >  NC_008463/4616300‑4616600
                                                                                                                                                        |                                                                                                                                                       
ccGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑t                                                                                                                                                         <  1:101566/151‑1 (MQ=255)
ccGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑t                                                                                                                                                         <  1:6352990/151‑1 (MQ=255)
  gAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑Tcc                                                                                                                                                       <  1:8903280/151‑1 (MQ=255)
     aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCGC‑GCCggt                                                                                                                                                    >  1:4795456/1‑149 (MQ=255)
     aaCGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑Tccagt                                                                                                                                                    >  2:401014/1‑148 (MQ=255)
       cgccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTAGACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑CGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGc                                                                                                                                                  <  1:2400692/151‑1 (MQ=255)
        gccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCa                                                                                                                                                 <  2:868991/151‑1 (MQ=255)
         ccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGcca                                                                                                                                                >  2:8849924/1‑149 (MQ=255)
         ccgcAGGAGACACCGTAAAGGCTGCACAGCTTATACGCCTCGGCAATGCCGCACACAGAGCAACGAGGCAAGCAAACTCAA‑CGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑t                                                                                                                                               <  2:267067/151‑1 (MQ=255)
          cgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAC‑ACGTTTGCCGATAGCCGAGGCTCCTGGCCCAGAGCATCGGCCGGACGCGCGCCGGCCCGC‑TCCGTTGCA‑Ta                                                                                                                                              <  2:3017275/151‑1 (MQ=255)
           gcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑GCCCGTGCA‑TAg                                                                                                                                             >  2:4891609/1‑151 (MQ=255)
             aGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGa                                                                                                                                           <  2:7924844/151‑1 (MQ=255)
              ggAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAg                                                                                                                                          <  2:4945434/151‑1 (MQ=255)
               gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTCGGCAAGCAAAATCAC‑AGGTGTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGc                                                                                                                                         <  2:3765754/151‑1 (MQ=255)
               gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGc                                                                                                                                         <  2:6627488/151‑1 (MQ=255)
                aGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCg                                                                                                                                        <  2:10340634/151‑1 (MQ=255)
                aGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑GCCGGTGGA‑TAGGGGCg                                                                                                                                        >  2:4789860/1‑151 (MQ=255)
                 gTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAACATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCgg                                                                                                                                       <  2:2173974/151‑1 (MQ=255)
                 gTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑GCCGGTGGA‑TATGAGCgg                                                                                                                                       >  1:10756446/1‑151 (MQ=255)
                 gTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGACGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGATCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCgg                                                                                                                                       <  2:2173818/151‑1 (MQ=255)
                  tCACCGTAAAGGCTGCAAAGTTTCTCCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑ACCGGTGCA‑AAGgcgccgg                                                                                                                                      >  2:3456349/1‑148 (MQ=255)
                   cACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGAt                                                                                                                                     <  1:1543616/151‑1 (MQ=255)
                    aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCGC‑TCCGGTGCC‑TGGGAGCGGGTc                                                                                                                                    >  2:1552846/1‑151 (MQ=255)
                    aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑ACCGTTGCA‑TAGGAGAggtta                                                                                                                                    >  2:8722720/1‑148 (MQ=255)
                    aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑ACCGTTGCA‑TAAGAGCGGATc                                                                                                                                    >  2:8002414/1‑151 (MQ=255)
                    aCCGTAAAGGCTGCAAAGCGTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑CCGTTTGCCGATAGCCGAGGCTCCATGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATc                                                                                                                                    <  2:7713377/151‑1 (MQ=255)
                     ccGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑CGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCg                                                                                                                                   <  1:4874614/151‑1 (MQ=255)
                     ccGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCg                                                                                                                                   <  1:4348068/151‑1 (MQ=255)
                     ccGTAAAGGCTGCAAAGATTATACGCCACGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCg                                                                                                                                   <  1:7004172/151‑1 (MQ=255)
                       gTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAGGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCGC‑GCCCGTGCC‑TGGGAGCgggtgggg                                                                                                                                 >  1:9974296/1‑145 (MQ=255)
                       gTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑GCCGTTGCA‑TAGGAGCGGATCGgc                                                                                                                                 >  2:10757663/1‑151 (MQ=255)
                       gTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGgc                                                                                                                                 <  2:1894640/151‑1 (MQ=255)
                        tAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCCCGCCCGTTG‑A‑AAGGAGCgggaggggg                                                                                                                                >  2:4588387/1‑144 (MQ=255)
                         aaaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGgcgc                                                                                                                               <  2:4512093/151‑1 (MQ=255)
                         aaaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGgcgc                                                                                                                               <  1:6926328/151‑1 (MQ=255)
                         aaaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑GCCCGTGGC‑TATGCGCGGCTCGgcgc                                                                                                                               >  2:9159323/1‑151 (MQ=255)
                          aaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑TCCGGTGCA‑TAGGAGCCGCTCGgcgcg                                                                                                                              >  2:6506033/1‑151 (MQ=255)
                           aGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑ACCGGTGGA‑TAGGAGCGGATCGgcgcgc                                                                                                                             >  2:3408459/1‑151 (MQ=255)
                           aGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCCC‑GCCCGTGGA‑GATGAGCCGGTCGgcgcgc                                                                                                                             >  2:690697/1‑151 (MQ=255)
                            ggCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGcc                                                                                                                            <  1:4686504/151‑1 (MQ=255)
                            ggCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGcc                                                                                                                            <  2:5534386/151‑1 (MQ=255)
                            ggCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGcc                                                                                                                            <  1:6241180/151‑1 (MQ=255)
                                  aaaGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCCC‑GCCCGTGGA‑TAAGAGCGGAACGGCGcccccgcaca                                                                                                                      >  1:8037890/1‑145 (MQ=255)
                                     gTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑CCCGTTGGA‑GAGGAGCGGATCGGCGCGCCGAcccccgg                                                                                                                   >  2:9264460/1‑145 (MQ=255)
                                       ttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑GCCGGTGGA‑TAGGAGCGGGTCGGGGCGCCCACACACAGcc                                                                                                                 >  2:7603490/1‑151 (MQ=255)
                                       ttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑TCCGGTGCC‑TAGGAGCGGAACGGCGCGCCGACACACAGcc                                                                                                                 >  2:3501789/1‑151 (MQ=255)
                                         ataCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGGCCCC‑ACCCGTGGA‑AATGGGCGGGTAGGGGCGCCCACGCACAGCCac                                                                                                               >  1:722093/1‑150 (MQ=255)
                                             ggcTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCCTCGGCCGGTCGCGGGCCGGCCCGG‑GGCGGTGCA‑TGGGGTGGGATGGGCGGGCCCACGCAAGGGCAGCggg                                                                                                           >  1:7958494/3‑150 (MQ=255)
                                             gCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCGC‑GCCGGTGGC‑TGTGAGCGGATCGGCGCGCCGACGCCCTGGCAGCGGa                                                                                                           >  2:6110801/1‑151 (MQ=255)
                                              ccTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCCC‑GCCGGTGCA‑TGGGAGCGGGTGGGCGGGGCGCCACCCAGCCAGCggga                                                                                                          >  2:4522064/1‑149 (MQ=255)
                                                tCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TTGGAGCGGATCGGCGCGCCGACTCACAGCCCACGGGAAt                                                                                                        >  2:9681541/1‑151 (MQ=255)
                                                tCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCCTTTCA‑TAGGAGCGGATCGGCGCGCCGCCGCACTGCCCGCGGacaa                                                                                                        >  2:10623018/1‑148 (MQ=255)
                                                   gCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑GCCCGTGGG‑TATGGGCGGGTCGGCGCGCCGACACCCAGCCACCGGGAAttaa                                                                                                     >  2:4394356/1‑149 (MQ=255)
                                                    ccaGGCCGCACATTGAGAAAATA‑GCAACTAAAAAAAATTGGTTTGCATATAGCGGTGGATCCTTCCCAACCGAACCGGCCGGCGGCCCGCGGGCCCGC‑T‑CGTTGTATTTGGTGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAg                                                                                                    <  2:10611786/149‑1 (MQ=255)
                                                     aaGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCCGCCCGC‑ACCCGTGGA‑TGGGTGCGGGTCGGGCCGCCGGCGCCCAGCCCGCGGAAATTCAgg                                                                                                   >  2:8140417/1‑150 (MQ=255)
                                                      aGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑TCCCGGGGA‑TAGGGCGGGGTCGGCGCGGCGACGCACAGCCCGCGGACATTcggat                                                                                                  >  2:9506635/1‑147 (MQ=255)
                                                          cGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑GCCGGTGGC‑TAGGTGGGGGTCGGGGCGCCGACGCACAGCCCCCGGGAAGTAAGTTtggg                                                                                              >  2:7241453/1‑150 (MQ=255)
                                                              caATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCCGCGCGCCGACACACAGCCCGCGGGAATTCAGTTGGgacgac                                                                                          >  2:8761371/1‑151 (MQ=255)
                                                              caATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑CCCGGTGCC‑TAGGGGGGGCGCTGCGCGGCCCCGCACAGCCACCGGGAAAACAGTTgggggggc                                                                                          >  1:9751756/1‑146 (MQ=255)
                                                               aaTGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCCC‑GCCCTTGGA‑TAGGGTCGGAGCGGCGCGCCGGCGCACAGCCAGCCGGAATTGAGATGGggcgacg                                                                                         >  1:8924555/1‑151 (MQ=255)
                                                                 tGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑GCCCGTGCA‑GAGGAGCGGGGAGGCGCGCCCCCGCACAGCCCCCCGGAATTGAGATTGggcgacgac                                                                                       >  2:3946515/1‑151 (MQ=255)
                                                                    gCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGGCCCC‑GCCGGGGGC‑TAGGAGCGGGTAGGGGCGCCGACACCAAGCCCGCGGAACATCAGTTTGGAGGACGTCggg                                                                                    >  1:6550134/1‑150 (MQ=255)
                                                                                caaaaaACAA‑TGGTTGCCCTATCGCCGCGTCACCTTCCCCAGCGCATCGGCGGGCCGCCCGCGGCCCCGC‑TCCGTTGAT‑TAGGAGGGTAGCGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTg                                                                        <  2:1630768/149‑1 (MQ=255)
                                                                                 caaAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCGC‑ACCCGTGGA‑TAGGGGCGGGTAGGGGCCCCGACACACAGCCACCGGGAAATACCATGGGGCGACGACCGCCCCCCCCCGCggg                                                                       >  2:10125774/1‑151 (MQ=255)
                                                                                  aaaaTCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑ACCGGTGGC‑AAGGAGCGGTGCGGCGCGCCCACACACAGGCCGCCGGAAATAAGTTGGGACCCCGACCGCAACCCCGCGCTggg                                                                      >  2:6772116/1‑151 (MQ=255)
                                                                                    aaTCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGGCCCC‑GCCCATGCA‑AAGGTGCGGAACGGCGCCCCCACACACAGCCCCCGGGAATAAAGTTGGGACGAACCCGGCCCCGCCGCCCTGGgcg                                                                    >  2:9746396/1‑151 (MQ=255)
                                                                                       cAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCCGCCCGTGGCA‑‑ATGCGCGGGTAGGGGCGCCGCCACACAGCCCCCGGGAAATAAGTTGGGTCGACGACGGGACCGCCCCGCGGGGGGCTg                                                                 >  2:6625076/1‑151 (MQ=255)
                                                                                         a‑aGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑ACCCTGGGA‑TATGAGGGGTGGGGGGCGCCGCCGGACGGCCCCCGGGCAAGGAGTTGGGTCGGAGACGGCACCGCCGCGCGGGgcgcgggg                                                               >  2:3064033/1‑147 (MQ=255)
                                                                                           aGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCGC‑ACCGGTTGA‑TGTGCGCGGGTGGGCGCGCCGACCCACGGGCCGCCGCAATTGAGGTGGGTCGCCGACGGCACCCCCCCCCAGGgcgcctcgg                                                              >  2:5971825/1‑146 (MQ=255)
                                                                                             gTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCCGCCCCC‑GCCGGTGGC‑GAGGGGCGGCTCGGGGCGCGCACACCCAGCCACCCGAACAAAAGTTTGGGGGAGGCCGGCACCCCCCCCCGGGGCGCTGCGGGc                                                            >  2:3613312/1‑151 (MQ=255)
                                                                                                tGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCGC‑GCCCGTGGA‑GTGGGGAGGTGCGGCGCGCCGACACACGGCCCGCGGAAAAACTGTTGGGGCGAGCCCGGCCCCGCCCCGCGGGGCGCGGCggggggg                                                         >  2:4816338/1‑147 (MQ=255)
                                                                                                 gCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCGC‑ACCGGTGGA‑TAGGGGCGGAGAGGGGCCCCCTCACACTGGCACCCGAAAATAAATTTGGACGAAGAACGCACCCGCCCGCAGGGGCCAGCgggcgggc                                                        >  2:5324996/1‑151 (MQ=255)
                                                                                                 gCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGGCCGC‑ACCCGTTCA‑AAGGAGCGGATCGGCGCGCCCACTCAAATGCAGCGGGAATTATGTTTGGACGTCGAGGGCACCCCCGCGCGGGGGGCGGCCGGCgggg                                                        >  2:9470233/1‑150 (MQ=255)
                                                                                                    gATCGCCGAGGCGCCGGGCCCAGAGCACCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTGGCA‑TTGGCGCGGAGCGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCgg                                                     <  2:6950773/151‑1 (MQ=255)
                                                                                                            aGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑GCCGGTTGA‑GTGGTGCGGATCGGCGCGCCCACGACATGCCAGCCGGAATTGATGTGGGGCGCCGACGGCACCGCCGCCCGGGGCGGGGGGGGGTGGGcggcgggcacc                                             >  2:5008023/1‑146 (MQ=255)
                                                                                                                         cgtcctgcggcggGGCGCGCGCCGGCCCGC‑TCCGTTGAT‑TTGGCGCGGCCGGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGt                                <  2:5367908/144‑1 (MQ=255)
                                                                                                                           acctgcGGCCGGTCGCGCCCCGGCCCGC‑TCGGGGGCA‑GAGGTGCGTAGCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCg                              <  2:10634821/146‑1 (MQ=255)
                                                                                                                              cggggCGGGCCGGGCGCCGGCCCTC‑GCGGGTGCA‑GCGGCGCGGCCCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGcc                           <  2:7345021/148‑1 (MQ=255)
                                                                                                                              cggggCCGGTCGCCCGCCGGCCCGC‑TCGGTTGCA‑TTGGCGCGGAGCGCCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGcc                           <  2:9564758/148‑1 (MQ=255)
                                                                                                                                        cgcgcgCCGGCCCGC‑TCCGTGGCA‑TCGCGGCGTATCGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                 <  2:9519586/151‑1 (MQ=255)
                                                                                                                                        cgcgcgCCGCCCCGC‑TGCTGTGCT‑TTGGCGCGTCGCGGCCCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                 <  2:934551/151‑1 (MQ=255)
                                                                                                                                        cgcgcgCCGCCCCCC‑TCGGGTCCA‑GCGCCGCGCAGCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                 <  2:7024387/151‑1 (MQ=255)
                                                                                                                                         gcgcgcCGGCCCGC‑TCCGTTGCA‑TAGGCGCGTCGCGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTg                <  2:10262118/151‑1 (MQ=255)
                                                                                                                                          cgcgcgGCCCGGC‑TCGTTTGCA‑TGGGCGGGGCCGGGCCCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGc               <  1:3963279/151‑1 (MQ=255)
                                                                                                                                          cgcgcCGGCCCGC‑ACCGTTTCA‑TCGGCGCGGATCGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGc               <  2:3178841/151‑1 (MQ=255)
                                                                                                                                           gcgcCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCa              >  1:8410/1‑151 (MQ=255)
                                                                                                                                           gcgcCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCa              >  2:2403155/1‑151 (MQ=255)
                                                                                                                                             gcCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc            >  1:4858774/1‑151 (MQ=255)
                                                                                                                                               gggCCCGC‑CCCGTTCCA‑TCGGCGCGGAGCGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTg          <  1:6917124/150‑1 (MQ=255)
                                                                                                                                               cGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTg          >  1:10082937/1‑151 (MQ=255)
                                                                                                                                                ggCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCAGTCGGCCGGGATTTCCTGCACCTgc         >  2:2487417/1‑151 (MQ=255)
                                                                                                                                                  cccGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcgc       >  2:9925926/1‑151 (MQ=255)
                                                                                                                                                    cGC‑TCCTTTGCA‑TGGGCGGGGGGGGGCGCCCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCa     <  1:10441130/151‑1 (MQ=255)
                                                                                                                                                     gC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCCGCGGTACGCTGTCGGCCGGGATTTCCTGCTACTGCGCCAg    >  2:10020926/1‑151 (MQ=255)
                                                                                                                                                     gC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg    >  2:7424043/1‑151 (MQ=255)
                                                                                                                                                     gC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg    >  1:3012611/1‑151 (MQ=255)
                                                                                                                                                     gC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGGTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg    >  2:3542918/1‑151 (MQ=255)
                                                                                                                                                      c‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGAGTTCCTGCAACTGCGCCAgg   >  1:6071218/1‑151 (MQ=255)
                                                                                                                                                        tCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGc  >  1:9849918/1‑151 (MQ=255)
                                                                                                                                                        tCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCGGTCGGCCGGGATTTCCTGCAACTGCGCCAGGc  >  2:8388411/1‑151 (MQ=255)
                                                                                                                                                        |                                                                                                                                                       
CCGAAAACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAA‑AGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑TCCGTTGCA‑TAGGAGCGGATCGGCGCGCCGACTCACTGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGC  >  NC_008463/4616300‑4616600

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑