Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_008463 3,515,863 T→C intergenic (+617/+267) PA14_RS16005 → / ← PA14_RS16010 AAA family ATPase/DUF4354 family protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084633,515,8630TC99.0% 1132.1 / NA 302intergenic (+617/+267)PA14_RS16005/PA14_RS16010AAA family ATPase/DUF4354 family protein
Reads supporting (aligned to +/- strand):  ref base T (0/0);  major base C (140/159);  minor base G (3/0);  total (143/159)
Fisher's exact test for biased strand distribution p-value = 1.05e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 302 total aligned reads displayed.

TATACAGCCCCTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCTTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAGGCAACCAAA  >  NC_008463/3515716‑3516009
                                                                                                                                                    |                                                                                                                                                   
   aCAGCCCCTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGACTGTGGTGTTGGCCCTCAcc                                                                                                                                                >  2:8884417/1‑150 (MQ=255)
   aCAGCCCCTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCAcc                                                                                                                                                <  2:5635838/150‑1 (MQ=255)
     aGCCCCTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCAcccc                                                                                                                                              <  1:7911500/150‑1 (MQ=255)
       ccccTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCGCACCCCaa                                                                                                                                            >  1:4047793/1‑150 (MQ=255)
       ccccTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCaa                                                                                                                                            <  2:8506778/150‑1 (MQ=255)
         cctccctAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAAcc                                                                                                                                          <  2:4038964/150‑1 (MQ=255)
         cctccctAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACAACCCaaac                                                                                                                                          >  1:6702784/1‑148 (MQ=255)
         cctccccACGCCATAGCCCTTCCCCATACCTGAACCGCACACCTAGTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAAcc                                                                                                                                          <  2:5570832/150‑1 (MQ=255)
          ctccctAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTCGTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAAccc                                                                                                                                         <  2:10304021/150‑1 (MQ=255)
             cctAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCctct                                                                                                                                      <  2:2525750/150‑1 (MQ=255)
              ctAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCtctc                                                                                                                                    <  2:8926434/150‑1 (MQ=255)
               tAAGACATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTcc                                                                                                                                   <  2:5108267/150‑1 (MQ=255)
                aaGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCGCACCCCAACCCACAccc                                                                                                                                  >  2:1787308/1‑150 (MQ=255)
                 aGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCTCAACCCCACACACTcccc                                                                                                                                 >  1:4719952/1‑149 (MQ=255)
                 aGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTGTTGGAATGTGGTGTTGGGCCTCACCCCAACCCTCTCCCg                                                                                                                                 >  2:5923243/1‑150 (MQ=255)
                     aTAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCACTCCCCCAcg                                                                                                                             >  2:9669160/1‑150 (MQ=255)
                         cccTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCggg                                                                                                                         <  2:3647016/150‑1 (MQ=255)
                             tCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGagag                                                                                                                     <  2:8038862/150‑1 (MQ=255)
                              ccccATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCTCAACCCAACCCACAACCGCACGCGGGAGAgg                                                                                                                    >  2:3621935/1‑150 (MQ=255)
                               cccATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAggg                                                                                                                   <  1:1046829/150‑1 (MQ=255)
                                 cATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCCCACCCCCACCCACAACCCCCCCCGGGGGAggggg                                                                                                                 >  1:1622854/1‑150 (MQ=255)
                                 cATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCGCTCCCCCACCCGGGGGAggggg                                                                                                                 >  2:5260371/1‑150 (MQ=255)
                                  aTACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGc                                                                                                                <  1:4183799/150‑1 (MQ=255)
                                  aTACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGc                                                                                                                <  2:7711418/150‑1 (MQ=255)
                                  aTACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCCCACCCCAACCCAAAACCCCACCCGGGGGAGGGGGc                                                                                                                >  2:1155975/1‑150 (MQ=255)
                                   tACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCGCACCCCAACCCTCTCCCGCACCCCGGAGAggggggc                                                                                                               >  1:8698679/1‑148 (MQ=255)
                                    aCCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTTGCCCTCACCCCAACCCACAACCGCCAGCGGGAGAGGGGGGCg                                                                                                              >  1:10765114/1‑150 (MQ=255)
                                    aCCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACACCCCAACCCACACCCGCACGCGGGAGAGGGGGCCg                                                                                                              >  2:169656/1‑150 (MQ=255)
                                     ccTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCgg                                                                                                             <  1:6073686/150‑1 (MQ=255)
                                      cTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGTGGGGGCCggg                                                                                                            >  2:7870633/1‑150 (MQ=255)
                                        gAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCCCCCCAACCCACTCCCCCCCGCGGGAGAGGGGGCCCGGCg                                                                                                          >  2:8264102/1‑150 (MQ=255)
                                          aCGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCACCCCCCAACCCACTACCCGCCGCGGGGGAGGGGGCCGGGCggg                                                                                                        >  1:5302699/1‑148 (MQ=255)
                                            ggCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGcc                                                                                                      <  2:9199070/150‑1 (MQ=255)
                                            ggCACACCTATTCCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCGAACCCCCAACCACACCCCCACGCGGGGGAGGGGGCCCGGccgggc                                                                                                      >  1:9102850/1‑145 (MQ=255)
                                             gCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCt                                                                                                     <  1:5092368/150‑1 (MQ=255)
                                               acacCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACAACCCAAACCTCACCCGCACGCCGGAGTGGGGggcgggcggggcgtg                                                                                                   >  2:10292690/1‑143 (MQ=255)
                                                  ccTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGACTGTGGTGTTGGGCCGCCACCCCACCCGCTCCCCCCCGCGGGACATGGGGGCGGGGGTGCCATGAgg                                                                                                >  2:3764473/1‑150 (MQ=255)
                                                  ccTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGGTGGCCCCCACCCCCACCCTCACCCGCACGCGGGGGAGGGGGCCGGGCGGGGCtggtgg                                                                                                >  2:3019943/1‑150 (MQ=255)
                                                  ccTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGGGGGGCCGCACCCCCACCCTCGCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTgg                                                                                                >  2:4790390/1‑150 (MQ=255)
                                                    tATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGt                                                                                              <  2:4250872/150‑1 (MQ=255)
                                                     aTTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTc                                                                                             <  2:4830934/150‑1 (MQ=255)
                                                     aTTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACAACCCAAACCACACCCGCCCCGGGGTGGGGGGGGCGGGCGTGCCTTGTGGGTc                                                                                             >  1:8247132/1‑150 (MQ=255)
                                                         ccACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCGCAACCCCAACCACAACCCCACCCCGGGGGGGGGGGCCGGCGTGGCGTGGGGGtggggg                                                                                         >  1:450073/1‑145 (MQ=255)
                                                          cACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCGTGTGGGTCGAgcg                                                                                        >  2:3449371/1‑150 (MQ=255)
                                                          cACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTAAACCCCAACCACTCCCGCACGCGGGCGAGGGGGCCGGGCGTGGCTTGTGGGTCGAgcg                                                                                        >  2:2106075/1‑150 (MQ=255)
                                                               gCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACACCCCCAACCACTACCCCACGCGGGGGGGGGGGCCGGGGGGGCCGGGTGGGGGGCGCGCcacg                                                                                   >  1:5757815/1‑150 (MQ=255)
                                                                 aaaaCCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCGCACCCCCACCCCATACCGCCCGCGGGGGGGGGGGCCGGGGGGGCCGTGTGGGGCGGGCGCctcgcg                                                                                 >  1:9201601/1‑149 (MQ=255)
                                                                   aaCCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCGCACCCCAACCCAAACCCGCACGCGGGAGAGGGGGCCCGGCGTGGCTTGTTGGTGCATCGCctcgctcc                                                                               >  2:7084760/1‑149 (MQ=255)
                                                                   aaCCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACACCCCAACCCACGCCCGCACGCGGGCGAGGGGGCCGGGGGTGCCGTGTGGGGCGAGCGCctcgctcg                                                                               >  2:6352094/1‑150 (MQ=255)
                                                                     ccaccaCCTCCCCCGCGGCTACCCGCAATCGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCCCCCCACCCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCggg                                                                             <  2:6153807/150‑1 (MQ=255)
                                                                     ccACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACAACCCCACCCCCAACCCCCCGCGGGCGAGGGGGGCGGGCGGGGCGGGTGGGGGGAGCGCCACCCGCggg                                                                             >  2:2030513/1‑150 (MQ=255)
                                                                     ccACAACCACCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCggg                                                                             <  2:5467691/150‑1 (MQ=255)
                                                                       acaACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCAAACCCCCACACACACCCGCCCCCCGGGGGGGGGGGCGGGCGGGGCCTGTGGGTGGAGCGGCGCGCACggggg                                                                           >  1:7442567/1‑148 (MQ=255)
                                                                       acaACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACACCCCAACCCACAACCCCACCCCGGGGAGGGGGGCGGGCGGGGCGTGTGGGGGGGGCGCcacgcaccgggg                                                                           >  1:846689/1‑143 (MQ=255)
                                                                        ccaCCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGgcgc                                                                          <  2:5067609/148‑1 (MQ=255)
                                                                           ccgccccccCTGCTAACCGCAATCGCTGCGGCTAGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGATGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGCGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCACGGGCGCAGc                                                                       <  2:2217097/147‑1 (MQ=255)
                                                                               ccccGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCTCAACCCCAACCACAACCCCCCCCGGGTGTGGGGGGCGGGGGGGCCTGGTGGGTCGGGCGCCGCCCGCGGGCGCCGCCTgg                                                                   >  2:9444552/1‑150 (MQ=255)
                                                                               ccccGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCGCACCCCCACCCACGACCCCACGCGGGGGAGGGGGGCGGGCGGGCGGTGTGGGTGGTGGGCCGCGCTCGGGCgccgccgcg                                                                   >  1:11187978/1‑147 (MQ=255)
                                                                                cccGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCGCACCCCCACCCAATACCGCACCCCGGGGGGGGGGGCGGGCGTGGCTGTTGGGGCGGGCGGCGCGCTGGGGGGCAggcgggg                                                                  >  1:7043659/1‑144 (MQ=255)
                                                                                 ccGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGTTCGGTTTTTGGAATGTGGTGTTGGGGCGCACCCCAAACCGATCCCGCACGCGGGGGCGGGGGGCGGGCCGGCCGGGTGGGGGGTGCGCCGCGCTCGGGGGCGGccatgag                                                                 >  1:7750554/1‑145 (MQ=255)
                                                                                 ccGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCTCACCCCAACCCACACCCCCACCCCGGAGAGGGGGCCCGGGGGGCCGTGTGGGTCGAGCGCCGCCCGCCGGCGCAGCCGGGaa                                                                 >  1:3489818/1‑150 (MQ=255)
                                                                                 ccGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGaa                                                                 <  1:7287844/150‑1 (MQ=255)
                                                                                  cGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCTCACCCCAACCCCCAACCCCCAGCGGGTGTGGGGGCCGGGCGTGCCATGTGGGTAGAGCGCCGCGGGCGGGCGCCGCCGGGAAc                                                                >  2:7448704/1‑150 (MQ=255)
                                                                                  cGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCGCACCCCCACCCACAACCCCACCCCGGGGTGGGGGGCGGGCGGGCCGTGTGGGTCGAGCCCCGCGCACGGGCGCAGCCAGGTAc                                                                >  1:3683406/1‑150 (MQ=255)
                                                                                    ctgctAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCACCCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGa                                                              <  2:2453635/150‑1 (MQ=255)
                                                                                    ctgctAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGa                                                              <  1:638729/150‑1 (MQ=255)
                                                                                     tgctAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCACACCCCAACCCACAACCGCACGCGGGAGAGGGGGCCGGGCGTGGCGGGTGGGTCGAGCGCCGCGCACGGGCGCAACCggggaacat                                                             >  2:1662458/1‑144 (MQ=255)
                                                                                      gctAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCCAAACCCAAACCACAACCCCACCCCGGGGGGGGGGCCGGGCGGGGCGTGTGGGGGGGGCGCCGCCCGCGGGCGCCGCCCGGAAccctg                                                            >  1:7222373/1‑146 (MQ=255)
                                                                                       ctAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCACCCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGt                                                           <  1:18543/150‑1 (MQ=255)
                                                                                        tAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTc                                                          <  2:8669786/150‑1 (MQ=255)
                                                                                         aaCCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCt                                                         <  1:10106268/150‑1 (MQ=255)
                                                                                          aCCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCACACCCCCACCCACACCCCCCCCCCGGGGAGGGGGGCGGGCGGGGCGTGTGGGTGGCTGGCCCCGCGCCGGCGCAGCCCGGGACGATGACTa                                                        >  1:1238129/1‑150 (MQ=255)
                                                                                             gCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTAccc                                                     <  1:4025963/150‑1 (MQ=255)
                                                                                                aTAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCAAACCCGCACGCCGGAGAGGGGGCCGGGCGTGCCGTGTGGGTCGAGCGCCGCGCAAGGGGGCCGCCAGGAACGATGTCAAACCTcc                                                  >  2:4535630/1‑150 (MQ=255)
                                                                                                  aGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCACCCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTcccc                                                <  1:1718357/150‑1 (MQ=255)
                                                                                                  aGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTcccc                                                <  1:6557124/150‑1 (MQ=255)
                                                                                                  aGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTcccc                                                <  2:6747510/150‑1 (MQ=255)
                                                                                                   gCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCGCACCCCAACCCGGTCCCGCACGCGGGTGGTGGGGCCGGGCGGGGCGTGTGGGTGGAGCGCCGCGGGCGGGGGCAGCCCGGGAAGATGTGTAACccccccg                                               >  1:10002275/1‑149 (MQ=255)
                                                                                                   gCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCt                                               <  2:6041767/150‑1 (MQ=255)
                                                                                                   gCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCt                                               <  1:7068283/150‑1 (MQ=255)
                                                                                                   gCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCCCACCCCCAACCACACCCCCCCCCGGGTGAGGGGGGCCGGGGGGCCGTGTGGGGCGAGCCCCCCCCGCGGGGGCACCCAGGGAAGAGGTCTACCCAcccca                                               >  1:4409127/1‑149 (MQ=255)
                                                                                                         gCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGccc                                         <  1:9923379/150‑1 (MQ=255)
                                                                                                          cTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGcccc                                        <  2:1392163/150‑1 (MQ=255)
                                                                                                           ttGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGGCCAAACCCCAAACCACGACCGCCCCCCGGGGCTGGGGGCGGGCGGGGCTTGTGGGGCGGGCGCCACGCGCGGGCGCCGCCGTGAACCAATTCGACCCACCCCCAGGGCCCg                                       >  2:3251055/1‑150 (MQ=255)
                                                                                                             gAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCggg                                     <  1:6913245/150‑1 (MQ=255)
                                                                                                                 gtCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATc                                 <  2:4347179/150‑1 (MQ=255)
                                                                                                                   cgcgGATCGGTTTTTGGAATGTGGTGTTGGCCCACAACCCAACCCACTCCCGCACCCGGGTGAGGGGGCCGGGCGGGCCGTGTGGGTCGAGCGCCACGCGCGGGCGGCCCCGGGCACCGAGGCTACCCCCCCCCAGGCCCCcgggcaagg                               >  2:6506563/1‑144 (MQ=255)
                                                                                                                    gcgGATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCCACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTgg                              <  1:3096557/150‑1 (MQ=255)
                                                                                                                      ggATCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGaa                            <  1:180328/150‑1 (MQ=255)
                                                                                                                        aTCGGTTTTTGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAAtt                          <  2:210990/150‑1 (MQ=255)
                                                                                                                         tccgTTTTTGGAATGTGGTGTTGGCCCACAACCCAACCCACACCCGCACGCGGGAGAGGGGGCCGGGCGTGCCGTGTGGGTCGAGCGCCACGCTCGGGCGCAGCCGGGAACGATGTCTACCCAACCCTAGGCCCCGGGTGTCTGGAATTc                         >  2:3372336/4‑150 (MQ=255)
                                                                                                                              ttttGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGccc                    <  1:2122599/150‑1 (MQ=255)
                                                                                                                               tttGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGcccc                   <  1:1732387/150‑1 (MQ=255)
                                                                                                                                 tGGAATGTGGTGTTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCccca                 <  1:1382395/150‑1 (MQ=255)
                                                                                                                                      tgtgGTGTTGGCCCGCACCCCAACCCACACCCGCACCCCGGAGAGGGGGCCGGGCGTGCCGTGTGGGTCGAGCGCCACCCTCGGGGGCACCCGGGAACCATGTCTACCCACCCCTAGGCCCCCGGTAACTGGAATTAGGCCcccccccca            >  2:8086897/1‑150 (MQ=255)
                                                                                                                                        tggtgTTGGCCCTCACCCCCACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAgg          <  2:1010581/150‑1 (MQ=255)
                                                                                                                                           tgtTGGCCCTCCCCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAGGCaa       <  1:9824916/150‑1 (MQ=255)
                                                                                                                                            gtTGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAGGCAAc      <  2:5199248/150‑1 (MQ=255)
                                                                                                                                             ttGGCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAGGCAAcc     <  2:11036388/150‑1 (MQ=255)
                                                                                                                                                 gCCCTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAGGCAACCaaa  <  1:154402/150‑1 (MQ=255)
                                                                                                                                                    |                                                                                                                                                   
TATACAGCCCCTCCCTAAGCCATAGCCCTTCCCCATACCTGAACGGCACACCTATTGCCACCCGCAAAACCACAACCTCCCCCGCTGCTAACCGCAATAGCTGCGGCTTGAGTGTCGCGGATCGGTTTTTGGAATGTGGTGTTGGCCTTCACCCCAACCCTCTCCCGCACGCGGGAGAGGGGGCCGGGCGTGCCTTGTGGGTCGAGCGCCTCGCTCGGGCGCAGCCTGGAACGATGTCTACCCTCCCCTAGGCCCCGGGTATCTGGAATTCGGCCCCCAGCCCAGGCAACCAAA  >  NC_008463/3515716‑3516009

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: