Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_008463 5,395,470 Δ1 bp intergenic (‑103/+50) PA14_RS24730 ← / ← PA14_RS24735 hypothetical protein/ATP‑binding protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084635,395,4670G.95.4% 1603.3 / 81.8 380intergenic (‑100/+53)PA14_RS24730/PA14_RS24735hypothetical protein/ATP‑binding protein
Reads supporting (aligned to +/- strand):  ref base G (0/5);  major base . (165/184);  minor base T (0/17);  total (165/215)
Fisher's exact test for biased strand distribution p-value = 4.69e-05
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 400 total aligned reads displayed.

CGCGTGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGGCGGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGCCGAG  >  NC_008463/5395318‑5395612
                                                                                                                                                     |                                                                                                                                                 
cgcgTGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAg                                                                                                                                                   <  1:3880972/150‑1 (MQ=255)
 gcgTGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAgg                                                                                                                                                  >  1:746785/1‑150 (MQ=255)
 gcgTGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGGTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAgg                                                                                                                                                  >  1:2019961/1‑150 (MQ=255)
  cgTGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAggg                                                                                                                                                 <  2:28173/150‑1 (MQ=255)
    tGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAgggcg                                                                                                                                               >  2:1505614/1‑148 (MQ=255)
      gTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAgggcggg                                                                                                                                             <  2:6274642/150‑5 (MQ=255)
       tCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCgggg                                                                                                                                           <  1:59768/150‑1 (MQ=255)
        cAGCCCCAGACAAGGGGGGATGATGCAGTGGTTACGCTGCATGGCGTCATCCTCACGGGGGGTCCAAGTTTTGTGCCTACTCCTGCCGCCAGGTTCAGCATAGGGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCggggc                                                                                                                                          <  2:10296701/150‑2 (MQ=255)
         aGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCggggct                                                                                                                                         <  1:3050118/150‑3 (MQ=255)
                gACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGc                                                                                                                                 <  1:4554247/150‑1 (MQ=255)
                   aaGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGcccc                                                                                                                              <  1:7835579/150‑1 (MQ=255)
                    aGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCg                                                                                                                             <  1:2454466/150‑1 (MQ=255)
                          gATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCAAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGCGCTTTCCAGCCCCGCCCTCg                                                                                                                       >  2:5805221/1‑150 (MQ=255)
                           aTGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCgg                                                                                                                      <  2:5407943/150‑1 (MQ=255)
                            tGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGc                                                                                                                     <  1:2865902/150‑1 (MQ=255)
                             gAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCa                                                                                                                    <  2:9242154/150‑1 (MQ=255)
                             gAGGCAGAGGTTACGCGGCAGGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCa                                                                                                                    <  1:10201561/150‑1 (MQ=255)
                              aGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAg                                                                                                                   >  2:2170536/1‑150 (MQ=255)
                              aGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAg                                                                                                                   <  2:4566280/150‑1 (MQ=255)
                                gCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGt                                                                                                                 <  2:7522094/150‑1 (MQ=255)
                                gCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGt                                                                                                                 <  2:8069717/150‑1 (MQ=255)
                                   gagGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTcc                                                                                                              >  1:5321591/1‑150 (MQ=255)
                                    agGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTCCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCg                                                                                                             <  2:8594456/150‑1 (MQ=255)
                                     ggTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACCCCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCTCGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCgg                                                                                                            <  2:7907421/150‑1 (MQ=255)
                                     ggTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCgg                                                                                                            >  1:873087/1‑150 (MQ=255)
                                      gTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGc                                                                                                           >  1:11058479/1‑150 (MQ=255)
                                        tccgcgCCATGGCGGCAGCCACACGGGGGTTCCCTTTTTTGCGCCTACACCTGCCGCCAGGTTCCGCATCGCGCCGGCGGCAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCaa                                                                                                         <  1:2576959/148‑1 (MQ=255)
                                             ggCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACgcgc                                                                                                    >  2:1681514/1‑150 (MQ=255)
                                             ggCATGGCGGCAACCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTACCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAACAGCACGAGGGCGGCGCTATCCAGCCCCGCCCTCGGCAGGTTCCGGCAACgcgc                                                                                                    >  2:7727120/1‑150 (MQ=255)
                                              gCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGcc                                                                                                   >  1:5152750/1‑150 (MQ=255)
                                                      gcATCCTCCCGGGGGTTCCCTTTTTTGAGCCTACACCTGCCGCCCGGTTCCGCATCGCGCCGGCGGTAACTGGTCCACAGGGCTTACACGCACGTGGGCGGGGCTTCCCCGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAg                                                                                           <  1:995455/150‑1 (MQ=255)
                                                         tCCTCACGGGGGTTCCCAGTTTTGAGCCTACCCCTGCCGCCAGGTTCCGCATCGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTcc                                                                                        <  2:388457/150‑1 (MQ=255)
                                                         tCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCTCGAGGGCGGGGCGTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCCGTcc                                                                                        >  1:6144248/1‑150 (MQ=255)
                                                         tCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTcc                                                                                        >  1:7569627/1‑150 (MQ=255)
                                                         tCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTcc                                                                                        >  2:5261051/1‑150 (MQ=255)
                                                         tCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCAGAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCACCGCGCCGGACTCAGTcc                                                                                        >  2:4128955/1‑150 (MQ=255)
                                                              aCGGGGGTTCCCTTTTTTGCCCCTACACCTGCCGCCAGTGTCCCCATAGCGCCGGCGGGACCTTGTCCACTGGGCTGAAACGCCCGAGGGCGGGGCTTACCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCcttctt                                                                                   <  1:379265/150‑1 (MQ=255)
                                                              aCGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCcttctt                                                                                   >  1:402110/1‑150 (MQ=255)
                                                              aCGGGGGTCCCCAGTTTTGAGCCTACCCCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAACCGCCCGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCcttctt                                                                                   <  2:1911292/150‑1 (MQ=255)
                                                               cGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCatcttc                                                                                  >  2:5487134/1‑150 (MQ=255)
                                                                gggggTTCCCATTTTTGACCCTACACCTGCCCCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTTAACCGCACGAGGGCGGGGCTTACCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTcg                                                                                 <  1:8534291/150‑1 (MQ=255)
                                                                 ggggTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTcgc                                                                                >  2:3737766/1‑150 (MQ=255)
                                                                 ggggTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTcgc                                                                                <  2:7396515/150‑1 (MQ=255)
                                                                         cAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCt                                                                        <  2:10619165/150‑1 (MQ=255)
                                                                         cAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCt                                                                        <  2:5038828/150‑1 (MQ=255)
                                                                           gTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCGTCTTCGCCGCGGCCTTg                                                                      >  2:10945054/1‑150 (MQ=255)
                                                                           gTTTGGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTg                                                                      <  1:6979839/150‑1 (MQ=255)
                                                                            ttttGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGt                                                                     <  2:1204690/150‑1 (MQ=255)
                                                                            ttttGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGt                                                                     >  1:4885521/1‑150 (MQ=255)
                                                                              ttGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTcc                                                                   >  1:1750150/1‑150 (MQ=255)
                                                                                gcgCCTACACCTGCCGCCTGGTTCCGCATAGCGCCGGCGGTAAGTTGTCCACAGGGCTGAAACGCAGGAGGGCGGGGCTTTCCCGCCCCCCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCtt                                                                 <  1:1442415/148‑1 (MQ=255)
                                                                                gacccTACACCTGCCCCCAGGTTCCGCAGCGCGCCGGCGGCAACTTGTCCACCGGGCTGAAACGCACGAGGGCGGGGCGTGCCCGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCtt                                                                 <  1:66283/147‑1 (MQ=255)
                                                                                gAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCtt                                                                 >  2:10478767/1‑150 (MQ=255)
                                                                                 aGCCTACACCTGCCGCCTGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACCGGGCTGAAACGCACGCGGGCGGGGATTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTc                                                                <  1:5484965/150‑1 (MQ=255)
                                                                                  gCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTcg                                                               <  2:4439397/150‑1 (MQ=255)
                                                                                     tACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTcgccg                                                            >  1:9559851/1‑150 (MQ=255)
                                                                                      acacCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTcgccgc                                                                             >  1:4734879/1‑132 (MQ=255)
                                                                                        acCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGACCTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTAGTCCTTCGCCGCGa                                                         >  2:6722840/1‑150 (MQ=255)
                                                                                           tGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCCCGCGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACgg                                                      <  1:8294627/150‑1 (MQ=255)
                                                                                                ccAGGTTCCGGATTGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTGCTTCTGCGCCGCGGCCTGGTCCTGCGCCGCGACGGTctct                                                 >  2:5828391/1‑150 (MQ=255)
                                                                                                ccAGGTTCCGCATCGCGCCGGCGGGAACTTGTCCACCGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTctct                                                 <  1:8099032/150‑1 (MQ=255)
                                                                                                ccAGGTTCCGCATAGCGCCGGCGGGAACTGGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGtctcg                                                 <  2:9577705/150‑2 (MQ=255)
                                                                                                ccAGGTTCCGCATAGCGCCGGCGGGAACTAGTCCACAGGGCTGAAACGCACGAGGGCGGGGCGTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCATTCGCCGCGACGGTctct                                                 >  2:5120616/1‑150 (MQ=255)
                                                                                                  aGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCttt                                               >  2:11031786/1‑150 (MQ=255)
                                                                                                    gtaccGCATAGCGCCGGCGGGAACTTGTCCACCGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTtct                                             <  1:9878829/147‑1 (MQ=255)
                                                                                                     ttCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTtctc                                            >  1:4959559/1‑150 (MQ=255)
                                                                                                     ttCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCGTCGCCGCGACGGTCTCTTtctc                                            >  2:3155992/1‑150 (MQ=255)
                                                                                                        cGCATAGCGCCGGCGGGAACTTGTCCACTGTGCTGAAACGCACGAGGGCGGGGCTTTCCTGCCCCGCCCTCGGCAGGTTCAGGCAACGCGCCGGAATCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTccgc                                         <  2:2603859/150‑1 (MQ=255)
                                                                                                           aTAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCgg                                      <  2:1283678/150‑1 (MQ=255)
                                                                                                              gcgcCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCtt                                   >  2:7852153/1‑150 (MQ=255)
                                                                                                               cgcCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTg                                  <  1:10033044/150‑1 (MQ=255)
                                                                                                                 ccGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTc                                >  1:4225298/1‑150 (MQ=255)
                                                                                                                 ccGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGGTCCGGCCACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTAGTc                                >  2:2365329/1‑150 (MQ=255)
                                                                                                                  cggcggGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTcc                               <  2:8692203/150‑1 (MQ=255)
                                                                                                                  cggcggGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTcc                               >  2:4921260/1‑150 (MQ=255)
                                                                                                                  cggcggGAACGTCTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCGTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTcc                               <  2:7077952/150‑1 (MQ=255)
                                                                                                                   ggcggGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCt                              >  1:10711122/1‑150 (MQ=255)
                                                                                                                    gcggTAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCtt                             <  1:3225706/150‑1 (MQ=255)
                                                                                                                    gcggGAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCtt                             <  1:7263727/150‑1 (MQ=255)
                                                                                                                        gAACTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTcc                         >  1:5540949/1‑150 (MQ=255)
                                                                                                                          aCTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCtt                       >  2:93410/1‑150 (MQ=255)
                                                                                                                          aCTTGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCtt                       >  2:8148741/1‑150 (MQ=255)
                                                                                                                           cTTGTCCACAGGGCTGAAACGCACGCGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTg                      <  1:1150408/150‑1 (MQ=255)
                                                                                                                            ttGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTTCTTgt                     <  2:7959828/150‑1 (MQ=255)
                                                                                                                             tGTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTgtc                    <  2:881300/150‑1 (MQ=255)
                                                                                                                             ggTCCACAGGGCTGAAACGCACGCGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTgtc                    <  1:5824396/149‑1 (MQ=255)
                                                                                                                              gTCCACAGGGCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTgtcg                   <  2:9052221/150‑1 (MQ=255)
                                                                                                                                    aGGGCTGAAACGCACGTGGGCGGGTCTTTCCAGCCCCGCCCTCGGCAGGTTCCTGCATCGAGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCctct             <  1:8847103/150‑1 (MQ=255)
                                                                                                                                     gggCTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCtt            <  2:3221102/150‑1 (MQ=255)
                                                                                                                                        cTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCa         <  1:4134966/150‑1 (MQ=255)
                                                                                                                                        cTGAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCa         <  1:10354282/150‑1 (MQ=255)
                                                                                                                                          gAAACGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATg       >  2:6032826/1‑150 (MQ=255)
                                                                                                                                           aaaCGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGc      <  1:9044126/150‑1 (MQ=255)
                                                                                                                                           aaaCGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCGTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGc      >  1:5191651/1‑150 (MQ=255)
                                                                                                                                           aaaCGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCGTCTTCGCCGCGGCCTTGTCCGTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTACTTGTCGTCCTCTTCCATGc      >  2:986517/1‑150 (MQ=255)
                                                                                                                                            aaCGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGcc     <  2:3604816/150‑1 (MQ=255)
                                                                                                                                            aaCGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCGTCTTAGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGcc     >  2:3336517/1‑150 (MQ=255)
                                                                                                                                              cGCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGCCGa   <  1:6257918/150‑1 (MQ=255)
                                                                                                                                               gCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGCCGAg  >  1:2130206/1‑150 (MQ=255)
                                                                                                                                               gCACGAGGGCGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGCCGAg  >  1:2662237/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                 
CGCGTGGTCAGCCCCAGACAAGGGCGGATGAGGCAGAGGTTACGCGGCATGGCGGCATCCTCACGGGGGTTCCCAGTTTTGAGCCTACACCTGCCGCCAGGTTCCGCATAGCGCCGGCGGGAACTTGTCCACAGGGCTGAAACGCACGAGGGGCGGGGGCTTTCCAGCCCCGCCCTCGGCAGGTTCCGGCAACGCGCCGGACTCAGTCCTTCTTCGCCGCGGCCTTGTCCTTCGCCGCGACGGTCTCTTTCTCCGCCGGCTTGTCCTTTTCCTTGTCGTCCTCTTCCATGCCGAG  >  NC_008463/5395318‑5395612

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: