Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0084634,616,4540TG27.7% 317.4 / 18.6 162intergenic (‑174/+28)hda/PA14_RS21180DnaA regulatory inactivator Hda/DUF2066 domain‑containing protein
Reads supporting (aligned to +/- strand):  ref base T (56/59);  new base G (43/1);  total (101/61)
Fisher's exact test for biased strand distribution p-value = 6.64e-10
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 166 total aligned reads displayed.

AACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGCCCA  >  NC_008463/4616305‑4616603
                                                                                                                                                       |                                                                                                                                                        
  cgccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑G‑CCGGTg                                                                                                                                                        >  2:10083357/1‑150 (MQ=255)
    ccgcAGGAGTCACCGTAAAGGCTGCAACGTTTAGACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAACGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCa                                                                                                                                                      <  1:8685601/150‑1 (MQ=255)
    ccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCACAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CCGGTggg                                                                                                                                                      >  1:7620414/1‑148 (MQ=255)
    ccgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑A‑CCGGTGcc                                                                                                                                                      >  2:2427395/1‑149 (MQ=255)
     cgcAGGAGTCACCGTATAGGCTGATAAGTTTATCCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAATGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCAt                                                                                                                                                     <  2:2674350/150‑1 (MQ=255)
     cgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCGC‑G‑CCGGTgggt                                                                                                                                                     >  1:4933653/1‑147 (MQ=255)
     cgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑G‑CCCGTGCAt                                                                                                                                                     >  2:2959514/1‑150 (MQ=255)
     cgcAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCGGTGCag                                                                                                                                                     >  2:7695909/1‑149 (MQ=255)
        aGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCCCCC‑C‑CCGGTggcgtgg                                                                                                                                                  >  1:10496682/1‑144 (MQ=255)
         ggAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCGGTGGAGA‑ggg                                                                                                                                                >  1:9728190/1‑149 (MQ=255)
         ggAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑C‑CCGGTGCaataga                                                                                                                                                 >  2:3973264/1‑145 (MQ=255)
          gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑Ag                                                                                                                                              <  2:8463431/150‑1 (MQ=255)
          gAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑Ag                                                                                                                                              <  2:7894065/150‑1 (MQ=255)
            gTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCg                                                                                                                                            <  1:10206838/150‑1 (MQ=255)
             tCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCgg                                                                                                                                           <  2:8014048/150‑1 (MQ=255)
              cACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGa                                                                                                                                          <  1:616603/150‑1 (MQ=255)
              cACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAAAGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGa                                                                                                                                          <  2:7598220/150‑1 (MQ=255)
               aCCGTAACGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGAt                                                                                                                                         <  1:155740/150‑1 (MQ=255)
               aCCGTAAAGTCTGCACAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGAt                                                                                                                                         <  2:3958093/150‑1 (MQ=255)
               aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCCC‑A‑CCCGTGCATA‑GG‑GGCGGag                                                                                                                                         >  2:4045507/1‑149 (MQ=255)
               aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCCGCGCCC‑A‑CCGAGGCAGA‑GG‑GGCGGag                                                                                                                                         >  1:2333281/1‑149 (MQ=255)
               aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGaa                                                                                                                                         <  1:1154913/150‑2 (MQ=255)
               aCCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGAt                                                                                                                                         <  2:6564180/150‑1 (MQ=255)
                ccGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAACCTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATc                                                                                                                                        <  2:7493962/150‑1 (MQ=255)
                ccGTAAAGGCTGCAAAGTGTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATc                                                                                                                                        <  2:4981562/150‑1 (MQ=255)
                 cGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACACTGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCg                                                                                                                                       <  2:2659610/150‑1 (MQ=255)
                 cGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGACGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑C‑ACGGGGGATA‑GG‑TGCGGATCg                                                                                                                                       >  1:5148711/1‑150 (MQ=255)
                  gTATAGGCTGCATAGTTTAGTCGCCTCGGCAAGGCCGCACAATGAGCAACTTGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑ACGTTGCATA‑GG‑AGCGGATCgg                                                                                                                                      <  1:4852207/150‑1 (MQ=255)
                  gTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCgg                                                                                                                                      <  1:5557782/150‑1 (MQ=255)
                  gTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCgg                                                                                                                                      <  1:8086753/150‑1 (MQ=255)
                   tAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGgc                                                                                                                                     <  1:5336289/150‑1 (MQ=255)
                    aaaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGgcg                                                                                                                                    <  1:4141509/150‑1 (MQ=255)
                     aaGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCCC‑G‑CCCGTGCAGA‑TG‑AGCCGCTCGgcgc                                                                                                                                   >  1:9577520/1‑150 (MQ=255)
                      aGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑A‑CCCGTGCCTA‑GG‑AGCGGATCGgcgcg                                                                                                                                  >  2:3300474/1‑150 (MQ=255)
                           gCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCGC‑T‑CCGTGGCATA‑GG‑AGCGGGTCGGCGCGCCGAc                                                                                                                             >  2:3301199/1‑150 (MQ=255)
                             aaaGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑C‑CCCGTGCCTA‑GG‑TGCGGGTCGGGGCGCCgcacc                                                                                                                           >  1:8833167/1‑146 (MQ=255)
                               aGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑CCCGTGCCTA‑GG‑AGCGGATAGGCGCGCCGAccaca                                                                                                                         >  2:7101790/1‑146 (MQ=255)
                               aGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCCC‑G‑CCGGTGGCTA‑GG‑AGCGGCTCGGCGCGCCgccgacc                                                                                                                         >  2:9863635/1‑144 (MQ=255)
                               aGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACAAGGCAAGCTAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCGTTGCGGA‑GG‑GGCGGATCGGCGGGCCGaagcac                                                                                                                         >  2:5217552/1‑145 (MQ=255)
                                gTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑G‑CCGTTGCATA‑GG‑AGCGGCTCGGCGCGCCGACTCAC‑t                                                                                                                       >  2:8009930/1‑150 (MQ=255)
                                 tttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGGTGCCTA‑GG‑AGGGGATCGGCGCGCCGACACAC‑Tg                                                                                                                      >  2:6346645/1‑150 (MQ=255)
                                  ttATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCCC‑T‑CCGCAGGATA‑GG‑AGGGGGTCGGCGCGCCCacacacaga                                                                                                                      >  1:4207352/1‑147 (MQ=255)
                                   tataCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CCCGTGCGAC‑TG‑AGCGGCTGGGCGCGCCcacacaagagc                                                                                                                     >  1:2265393/1‑145 (MQ=255)
                                   tataCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCG‑G‑ACGGTGCCGA‑GG‑AGCGGAACGGCGCGCCGACTCAC‑AGcc                                                                                                                    >  2:1550578/1‑150 (MQ=255)
                                      aCGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCCGCCCCC‑C‑CCGGTGGCTA‑GG‑GGCGGGGCGGCGCGCCCACACAC‑AGCCCGc                                                                                                                 >  1:2584651/1‑150 (MQ=255)
                                        gCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCGGTGCATA‑GG‑CGCGGGTCGGCGCGCCGGCTCCC‑TGCCAGCgg                                                                                                               >  2:7254675/1‑150 (MQ=255)
                                         ccTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑GCGGTGCATA‑GG‑GGCGGGTCGGCGCGCCGGCGCAC‑TGCCAGCGGa                                                                                                              >  2:9089608/1‑150 (MQ=255)
                                                  ggCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCGGCCCGC‑G‑CCGGTGCAAA‑GG‑TGCGGTTCGGCGCGCCGGCTAAC‑AGCCCGCCGAAATTAAggt                                                                                                     >  2:5336333/1‑148 (MQ=255)
                                                      gCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCGTTGGATA‑GG‑TGCGGCTCGGCGCGCCGACGCAC‑AGCCACCGGCAAATAAGGTgggg                                                                                                 >  2:11032875/1‑149 (MQ=255)
                                                      gCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑A‑CCGGTGCATA‑GG‑AGCGGGGCGGCGCGCCGACTCCC‑AGCCAGCGGTAATTAAGGTgggg                                                                                                 >  2:480747/1‑149 (MQ=255)
                                                       cacaCTGACCAACTCGCAAAGCAAAACCAATGTTTTGCCTATCGCCGCGCCCCCTTCCCAAGCGCATCGGCGGGGCGCGCCCCGGCCCGC‑C‑CGGTTCAAGC‑GT‑CGCGGAGCGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGgac                                                                                                <  2:4383881/150‑1 (MQ=255)
                                                          aaTGAGCAACTAGGCAAGCAACATCAACGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCGGGCCGC‑G‑CCCTTGCCGA‑GG‑GGCGGATGGGCGCGCGGGCGCCC‑GGCCCGCGGAACTGCAGTGGGgccggc                                                                                             >  2:4392319/1‑148 (MQ=255)
                                                            ttaccAACTAGCAAACAAAAATCAACTGTTTGCCTATTGCGGTGGCTCCTTCCCCAGACAAGCGCCGGGGCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑TGGGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGgacgacga                                                                                           <  2:9082092/146‑1 (MQ=255)
                                                             gAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑G‑CCCTTGCATA‑GG‑GGCGGTGCGGCGCGCCGACACAC‑GGCCCGCGGGAAATGCGTTGGgacgacgac                                                                                          >  2:2635505/1‑150 (MQ=255)
                                                                   cTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCGG‑G‑CCGTTGGATT‑TG‑TAGGGAGAGGCGCGCCCGCACAA‑AGGCAGCGGGAATTGAGTGTGGGCGAGGACGGGAcc                                                                                    >  2:9803392/1‑150 (MQ=255)
                                                                   cTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCCGCCCGC‑A‑CCGGTTGAAA‑GG‑ATCGGAAAGGCGCGCCGACACAC‑AGCCCCCGGAAAATAATTTTGGACGAAGAAGGCAcc                                                                                    >  2:11074127/1‑150 (MQ=255)
                                                                       gcaagcaaAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑CCCTTGGAAA‑GG‑GGCGGATAGGCGCGCCCCCACAC‑AGCCACCCGCAAAAAAGGTGGGGCGTCGTCGGCAcccccc                                                                                >  1:6406335/1‑149 (MQ=255)
                                                                       caaacaaaaaTCATCGTTTTGCCGATCGCCGTGGCTCCTTCCCCCTCGCTTGGGCGGGGCGCGCGCCGGCCCGC‑C‑CGTTTCCATG‑GG‑CGCGGTGCGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCAccgccg                                                                                <  2:6151339/144‑1 (MQ=255)
                                                                         aagcaaATTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGGTGCATA‑TG‑AGCGGATCGGGGCGCCGACTCAA‑GTCCAGCGGTACATACGGTGGGAAGGCGTCGGCACCGCcgcg                                                                              >  2:6766266/1‑150 (MQ=255)
                                                                             aaaaTCAATGGTTTGCGTACCGCGGAGGCTCCTTGCCCAGCCCAGGGGCGGTGCGCCCGCGGGCCCGC‑T‑CGGTTTAATC‑GG‑AGGGTAGGGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTgg                                                                          <  2:5078105/150‑1 (MQ=255)
                                                                              aaaTCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGGCGGGCCGC‑TACCGGTG‑ATA‑GG‑AGGCGGTCGGGGCGGCCAATCAC‑AGCCACCGGTAAATCAGTTTGGACGACGACCGGACCGGCGCGCAggg                                                                         >  2:2471373/1‑150 (MQ=255)
                                                                                  cAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑A‑CCGTTTGCTA‑GG‑GGCGGTTCGGCGCGCCGCCGAAC‑AGCCCGCGGAAAATAAGGTGGGACACAGACGGCAACGCCGCGCTGGGGGCt                                                                     >  2:9924303/1‑150 (MQ=255)
                                                                                   aaaGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGGCGGCCCGC‑G‑CCGTTGGCTA‑GG‑TTCGGATCGGGGCGCCGCCACCC‑AGCCCCCGGTAATTCAGTTGGGGCGACCACGGGACCCCCGCGCGGGgcgcgg                                                                    >  2:7176865/1‑148 (MQ=255)
                                                                                   aaaGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑A‑CCGGTGGCTA‑GG‑AGCGGATAGGCGCGCCGCCTCAC‑AGCCACCGGAAAATAAATTGGGGCGGCGACGGCACCCCCGCGCGGGgcgcag                                                                    >  2:1653703/1‑148 (MQ=255)
                                                                                            ccGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGCGC‑CCGTTGC‑GA‑GG‑AGGGGGGGGGCGCGGCGCCACAC‑ATCCCCCCGAAAATAACGTGGGGCGACGGCGGCAACCCCGCGCGGGGGGCAGCgggcgggc                                                           >  2:3535840/1‑150 (MQ=255)
                                                                                             cGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGGTAGGCGCGCCGACACAC‑TGCCACCGGAAAATGAGTTTGGACGACGGCGGCACCGCCGCGCGGGGCGCTGCGGGCTGGcc                                                          >  2:10858076/1‑150 (MQ=255)
                                                                                               aTAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGCCCGC‑G‑CCCGTGCCGA‑GG‑GGCGGATGGGGGGGCCGCCGCAC‑GGCCCCCGGACATTGAGTGGGGGCGCCGCCGGCACCCCCCCGCGGGGGGCGGCGggcggggcgg                                                        >  2:6092168/1‑150 (MQ=255)
                                                                                                 ccccGCGGCGCCTTGCCCCGCGCAGCGGCGGGGCGCGCGCCGCCCGGC‑T‑CGGTTGCATC‑GG‑CGGGGCGCGGCGCGCCGACTCAC‑GGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAg                                                      <  2:576413/148‑1 (MQ=255)
                                                                                                      aGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCCC‑G‑CCGGTTGAGA‑GG‑TGAGGCGCGGCGCGCCCGCGGAC‑AGCCACCCGACACTCAGTTGGGGCGACGCACGCCCCCCCGCGCGGGGGGCCGCGGGGCTGCCggcggccac                                                 >  2:2911152/1‑147 (MQ=255)
                                                                                                       ggCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCCC‑G‑ACCTTGCATA‑GG‑AGCGGGTCGGCGCCCCGAAGCCCATGCCCCCGGAAA‑TAAGGTGGGGCGACGCCCGCCACCCCCCGCAGGGGCCAGCGGGGTGGCCCGGGGCaagc                                                >  2:9915018/1‑147 (MQ=255)
                                                                                                         cTCCTTGCCCAGAGCATCGGCCGGTCGCGGGCCGGGCCCC‑G‑CCCGTGGAGA‑GG‑GGCGGAGCGGCGCGCCCACCCAC‑AGGCCCCGGGAATTGAGTTGGGGCGGCGACGGGACCCCCGCCCGGGGGGCTGCGGGgggggcgggggccacccc                                              >  2:6886357/1‑144 (MQ=255)
                                                                                                           ccTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGGCCCC‑T‑CCGGTGGTTA‑GG‑AGGGGGTGGGCGGGCCCTCGCAC‑AGCCAGCGGGTAATGAGGTTGGTCGTCGACGGGCCCGCCGCGCTGGGCGCTGCGGGCGGGCCGGAGGCCTCAAGCg                                            >  2:7568669/1‑150 (MQ=255)
                                                                                                                 cactagCATGGCCGGGTCGCCCGCCGGCCCGC‑C‑CGTTTTCATA‑GG‑TGGGTTGGGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGc                                      <  2:5085891/146‑1 (MQ=255)
                                                                                                                      ccagcccccGGGCGCCCGCCGGCCCGC‑G‑CCGTAGAACT‑GC‑GGCTCTGCGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCg                                 <  1:8204760/143‑1 (MQ=255)
                                                                                                                         gcgcccGGGCGCGCGCCGCCCCGC‑‑‑CCGGTGGATT‑GGCCGCGGTGCGCCCCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGcc                              <  1:6761858/146‑1 (MQ=255)
                                                                                                                           ggCCGGTCGCGCCCCGGCCCGC‑T‑CCGTTTCATC‑GG‑CGGGGACCGCCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCAGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCgg                            <  2:1910919/150‑1 (MQ=255)
                                                                                                                              gggccgcgccCCGCCCCGC‑T‑CGGTGGAATC‑GG‑CGGTGACCGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGAt                         <  1:4224077/146‑1 (MQ=255)
                                                                                                                              cGGCCGCCCGCCGGCCCCC‑T‑CCG‑TGCAAACGG‑CGCGCAGCGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGAt                         <  1:6824863/150‑1 (MQ=255)
                                                                                                                                   gcgcccGGGCCCGC‑T‑CCGTTCCTTG‑GT‑CGGGTCCCGGCCCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                    <  1:8650734/150‑1 (MQ=255)
                                                                                                                                   ccgcgcCGCCCCGC‑C‑CGGTGGCACT‑GG‑CGCGGTCCGGCGCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCt                    <  2:5827944/149‑1 (MQ=255)
                                                                                                                                     gcgcCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGc                  >  1:8019332/1‑150 (MQ=255)
                                                                                                                                        ccGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc               >  2:2348587/1‑150 (MQ=255)
                                                                                                                                        ccGGCCCGC‑C‑CCGTTCCTTT‑CG‑CGGGGATCGGCCCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAAc               <  1:6929831/150‑1 (MQ=255)
                                                                                                                                         cGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCCGCGGACATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACt              >  2:4641469/1‑150 (MQ=255)
                                                                                                                                          ggCCCGC‑T‑CCGTTGCATC‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATGTCCTGCAACTg             >  2:1236573/1‑150 (MQ=255)
                                                                                                                                          ggCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTg             >  1:3503717/1‑150 (MQ=255)
                                                                                                                                          ggCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTg             >  1:1557328/1‑150 (MQ=255)
                                                                                                                                           gcccgc‑c‑cGGTGGCATT‑GT‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAAGTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgc            <  2:3089049/150‑1 (MQ=255)
                                                                                                                                            cccGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcg           >  2:6703525/1‑150 (MQ=255)
                                                                                                                                            cccGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcg           >  2:8671670/1‑150 (MQ=255)
                                                                                                                                             ccGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTgcgc          >  1:2381577/1‑150 (MQ=255)
                                                                                                                                              cGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGCTTTCCTGCAACTGCGcc         >  2:4815430/1‑150 (MQ=255)
                                                                                                                                               gC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCa        >  2:5163472/1‑150 (MQ=255)
                                                                                                                                                c‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg       >  1:7049321/1‑150 (MQ=255)
                                                                                                                                                c‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg       >  2:8256250/1‑150 (MQ=255)
                                                                                                                                                c‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg       >  1:3011756/1‑150 (MQ=255)
                                                                                                                                                c‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAg       >  1:10866439/1‑150 (MQ=255)
                                                                                                                                                  t‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAgg      >  1:9784877/1‑150 (MQ=255)
                                                                                                                                                    ccGTTGCTTG‑GG‑TGCGGCGCGGCCCCCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGc     <  1:3715492/150‑1 (MQ=255)
                                                                                                                                                    ccGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGc     >  1:10473686/1‑150 (MQ=255)
                                                                                                                                                       |                                                                                                                                                        
AACGCCGCAGGAGTCACCGTAAAGGCTGCAAAGTTTATACGCCTCGGCAAGGCCGCACAATGAGCAACTAGGCAAGCAAAATCAAAGGTTTGCCGATAGCCGAGGCTCCTTGCCCAGAGCATCGGCCGGTCGCGCGCCGGCCCGC‑T‑CCGTTGCATA‑GG‑AGCGGATCGGCGCGCCGACTCAC‑TGCCAGCGGAAATTCAGTTGGGACGACGACGGCACCGCCGCGCTGGGCGCTGCGGGCTGGCCGGAGGCATCCAGCGGTACGCTGTCGGCCGGGATTTCCTGCAACTGCGCCAGGCCCA  >  NC_008463/4616305‑4616603

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑