Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_008463 5,131,729 Δ34 bp pseudogene (288‑321/1180 nt) PA14_RS23490 ← acyl‑CoA dehydrogenase family protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_008463 5131729 5131762 34 613 [0] [0] 614 PA14_RS23490 acyl‑CoA dehydrogenase family protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_008463 = 51317280 (0.000)551 (1.250) 211/262 0.0 100% pseudogene (322/1180 nt) PA14_RS23490 acyl‑CoA dehydrogenase family protein
?NC_008463 5131763 = 0 (0.000)pseudogene (287/1180 nt) PA14_RS23490 acyl‑CoA dehydrogenase family protein

Only 100 of 613 total aligned reads displayed.

ACCGCCGTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGGCGCAGCGATGTCCGAATGTAGGGCGCAGCGATGTCCGAATGCAGGGAGAAACCGATCCCGGTCAGGCCGGCCCGACCGATCTCTTCGATGACCACGGCGCTGTAGAGGAAGTCCGCGCCCATCCCGCCATACTCTTCCGGCAGGT  >  NC_008463/5131579‑5131874
                                                                                                                                                     |                                                                                                                                                  
aCCGCCGTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATG                                                                                                                                                    <  1:2406692‑M1/150‑1 (MQ=255)
  cgccgTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtc                                                                                                                                                  >  1:7368454‑M1/1‑148 (MQ=255)
   gccgTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtcc                                                                                                                                                 <  1:10266526‑M1/150‑4 (MQ=255)
    ccgTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccg                                                                                                                                                <  2:918979‑M1/150‑5 (MQ=255)
    ccgTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccg                                                                                                                                                >  1:10001019‑M1/1‑146 (MQ=255)
     cgTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccga                                                                                                                                               >  2:7838703‑M1/1‑145 (MQ=255)
     cgTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccga                                                                                                                                               <  1:7724219‑M1/150‑6 (MQ=255)
      gTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaa                                                                                                                                              <  2:5999740‑M1/150‑7 (MQ=255)
      gTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaa                                                                                                                                              >  2:5528984‑M1/1‑144 (MQ=255)
       tGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaat                                                                                                                                             >  2:8155873‑M1/1‑143 (MQ=255)
       tGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaat                                                                                                                                             >  2:5354896‑M1/1‑143 (MQ=255)
       tGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaat                                                                                                                                             <  2:4482119‑M1/150‑8 (MQ=255)
              cACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCTGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcaggga                                                                                                                                      >  2:4774761‑M1/1‑136 (MQ=255)
                ccccTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggaga                                                                                                                                    >  2:7065904‑M1/1‑134 (MQ=255)
                 cccTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaa                                                                                                                                   <  1:9787377‑M1/150‑18 (MQ=255)
                    ttGCAGGTCGGAACCGTCCCCCGGCTCGGTCATGGAGATGGCCGCGACCATCTCGCAGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaacc                                                                                                                                <  1:9480635‑M1/150‑21 (MQ=255)
                      gCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccga                                                                                                                              <  1:4439232‑M1/150‑23 (MQ=255)
                      gCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccga                                                                                                                              <  1:890747‑M1/150‑23 (MQ=255)
                         ggTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcc                                                                                                                           >  1:8138698‑M1/1‑125 (MQ=255)
                         ggTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcc                                                                                                                           <  2:1208128‑M1/150‑26 (MQ=255)
                         ggTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcc                                                                                                                           >  1:5291342‑M1/1‑125 (MQ=255)
                             ggAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggt                                                                                                                       <  2:10286346‑M1/150‑30 (MQ=255)
                                aCCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTCGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcag                                                                                                                    <  1:4115129‑M1/150‑33 (MQ=255)
                                  cGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggc                                                                                                                  <  2:9376246‑M1/150‑35 (MQ=255)
                                   ggCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggcc                                                                                                                 <  2:2523248‑M1/150‑36 (MQ=255)
                                    gCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccg                                                                                                                <  1:2010997‑M1/150‑37 (MQ=255)
                                    gCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGGAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccg                                                                                                                >  2:8364778‑M1/1‑114 (MQ=255)
                                     cccccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccgg                                                                                                               >  1:2857743‑M1/1‑113 (MQ=255)
                                      ccccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggc                                                                                                              <  1:6231486‑M1/150‑39 (MQ=255)
                                        ccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTATGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggccc                                                                                                            <  2:3868916‑M1/150‑41 (MQ=255)
                                        ccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggccc                                                                                                            <  2:5129696‑M1/150‑41 (MQ=255)
                                        ccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggccc                                                                                                            <  2:791556‑M1/150‑41 (MQ=255)
                                        ccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggccc                                                                                                            >  1:673029‑M1/1‑110 (MQ=255)
                                        ccGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggccc                                                                                                            <  1:7154276‑M1/150‑41 (MQ=255)
                                         cGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCATCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccg                                                                                                           >  2:7201192‑M1/1‑109 (MQ=255)
                                           gCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgac                                                                                                         <  2:10413462‑M1/150‑44 (MQ=255)
                                           gCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgac                                                                                                         <  2:286777‑M1/150‑44 (MQ=255)
                                                gTCTTGGCGATGGCCGCGACAATCTCGCCGGATACCTGCTTCGGCAGGTTATTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcatggagtaaccgatcccggtcatgccggcccgaccgatc                                                                                                    <  1:5559321‑M1/150‑49 (MQ=255)
                                                gTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatc                                                                                                    <  1:2611764‑M1/150‑49 (MQ=255)
                                                   aTGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctct                                                                                                 <  1:2119168‑M1/150‑52 (MQ=255)
                                                    tGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctctt                                                                                                <  2:970611‑M1/150‑53 (MQ=255)
                                                    tGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctctt                                                                                                >  2:2365902‑M1/1‑98 (MQ=255)
                                                    tGGCGATGGCCGCGACCATCTCGCCGGAGACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctctt                                                                                                <  2:2142753‑M1/150‑53 (MQ=255)
                                                        gATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgat                                                                                            <  2:1660026‑M1/150‑57 (MQ=255)
                                                        gATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggacaggccggcccgaccgatctcttcgat                                                                                            >  2:4225842‑M1/1‑94 (MQ=255)
                                                          tGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatga                                                                                          >  1:8731296‑M1/1‑92 (MQ=255)
                                                          tGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatga                                                                                          <  1:6198421‑M1/150‑59 (MQ=255)
                                                             ccGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGAGGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgacca                                                                                       <  2:7628030‑M1/150‑62 (MQ=255)
                                                               gcgACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtctggccggcccgaccgatctcttcgatgaccacg                                                                                     <  2:1076132‑M1/150‑64 (MQ=255)
                                                               gcgACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGGAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacg                                                                                     >  2:10028351‑M1/1‑87 (MQ=255)
                                                                cgACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacgg                                                                                    >  1:6836792‑M1/1‑86 (MQ=255)
                                                                cgACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacgg                                                                                    <  2:1322171‑M1/150‑65 (MQ=255)
                                                                  aCCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCTCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcg                                                                                  <  1:6013994‑M1/150‑67 (MQ=255)
                                                                   ccATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgc                                                                                 >  2:5260084‑M1/1‑83 (MQ=255)
                                                                   ccATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgc                                                                                 >  1:5102972‑M1/1‑83 (MQ=255)
                                                                      tctcGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgt                                                                              <  1:3803645‑M1/150‑71 (MQ=255)
                                                                           ccGGATACCAGCGTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagagg                                                                         <  2:6833221‑M1/150‑76 (MQ=255)
                                                                            cGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagagga                                                                        <  1:3119283‑M1/150‑77 (MQ=255)
                                                                            cGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagagga                                                                        <  2:10702308‑M1/150‑77 (MQ=255)
                                                                            cGGAGACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagagga                                                                        <  1:9285485‑M1/150‑77 (MQ=255)
                                                                              gATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagtgagaaaccgatcccggtcaggccggcccgtccgatctcttcgatgaccacggcgctgtagaggaag                                                                      <  2:8936853‑M1/150‑79 (MQ=255)
                                                                              gATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaag                                                                      <  1:1181960‑M1/150‑79 (MQ=255)
                                                                                 aCCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtcc                                                                   <  2:1478386‑M1/150‑82 (MQ=255)
                                                                                  ccAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccg                                                                  >  1:7885603‑M1/1‑68 (MQ=255)
                                                                                       ttCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgccc                                                             <  1:9060118‑M1/150‑88 (MQ=255)
                                                                                       ttCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgccc                                                             <  1:421532‑M1/150‑88 (MQ=255)
                                                                                            cAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatccc                                                        <  2:3202509‑M1/150‑93 (MQ=255)
                                                                                             aGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccg                                                       <  2:5786772‑M1/150‑94 (MQ=255)
                                                                                             aGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccg                                                       <  1:3932533‑M1/150‑94 (MQ=255)
                                                                                                  cTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccata                                                  >  2:1150537‑M1/1‑52 (MQ=255)
                                                                                                     gcgcTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactc                                               >  2:2827172‑M1/1‑49 (MQ=255)
                                                                                                     gcgcTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgacctcttcgatgaccacggcgctgtagaggcagtccgcgcccatcccgccatactc                                               <  2:1919678‑M1/150‑102 (MQ=255)
                                                                                                       gcTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactctt                                             >  1:937534‑M1/1‑47 (MQ=255)
                                                                                                          tCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgaacccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccg                                          <  1:7049826‑M1/150‑107 (MQ=255)
                                                                                                            aGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggc                                        >  1:4329041‑M1/1‑42 (MQ=255)
                                                                                                            aGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggc                                        >  1:1513794‑M1/1‑42 (MQ=255)
                                                                                                             gcgcCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggca                                       <  1:141259‑M1/150‑110 (MQ=255)
                                                                                                                ccTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggt                                    <  1:3444078‑M1/150‑113 (MQ=255)
                                                                                                                  tCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgc                                  >  1:4728171‑M1/1‑36 (MQ=255)
                                                                                                                       gCCGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaaca                             <  1:6597599‑M1/150‑120 (MQ=255)
                                                                                                                        ccGTAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacag                            <  1:10703298‑M1/150‑121 (MQ=255)
                                                                                                                           tAGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagc                         <  2:2689954‑M1/150‑124 (MQ=255)
                                                                                                                            aGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagca                        <  2:6395330‑M1/150‑125 (MQ=255)
                                                                                                                            aGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagca                        <  2:8700247‑M1/150‑125 (MQ=255)
                                                                                                                            aGTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgcggtagaggaagtccgcgcccatcccgccatactcttccggccggtgcgaacagagca                        >  1:5743107‑M1/1‑26 (MQ=255)
                                                                                                                             gTGGAGGATGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcat                       >  2:7365626‑M1/1‑25 (MQ=255)
                                                                                                                                gaggaTGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattcc                    <  1:8520968‑M1/150‑129 (MQ=255)
                                                                                                                                gaggaTGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattcc                    <  1:1786137‑M1/150‑129 (MQ=255)
                                                                                                                                gaggaTGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattcc                    <  1:4943649‑M1/150‑129 (MQ=255)
                                                                                                                                   gaTGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggc                 <  2:4164467‑M1/150‑132 (MQ=255)
                                                                                                                                   gaTGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggc                 >  2:3711045‑M1/1‑19 (MQ=255)
                                                                                                                                     tGTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcct               <  1:9892534‑M1/150‑134 (MQ=255)
                                                                                                                                      gTAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctc              <  2:6613891‑M1/150‑135 (MQ=255)
                                                                                                                                       tAGGGCGCAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcg             <  2:3023565‑M1/150‑136 (MQ=255)
                                                                                                                                             gcAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcgccggcc       <  1:7508871‑M1/150‑142 (MQ=255)
                                                                                                                                             gcAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcgccggcc       <  1:11051416‑M1/150‑142 (MQ=255)
                                                                                                                                             gcAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcgccggcc       >  2:859322‑M1/1‑9 (MQ=255)
                                                                                                                                             gcAGCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcgccggcc       >  1:832955‑M1/1‑9 (MQ=255)
                                                                                                                                                gCGATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcgccggccttg    <  1:8962011‑M1/150‑145 (MQ=255)
                                                                                                                                                  gATGtccgaatgcagggagaaaccgatcccggtcaggccggcccgaccgatctcttcgatgaccacggcgctgtagaggaagtccgcgcccatcccgccatactcttccggcaggtgcgaacagagcattccggcctcgccggccttgtt  >  1:5497401‑M1/1‑4 (MQ=255)
                                                                                                                                                     |                                                                                                                                                  
ACCGCCGTGGTCTTCACCCCTTGCAGGTCGGAACCGGCCCCCGGCTCGGTCATGGCGATGGCCGCGACCATCTCGCCGGATACCAGCTTCGGCAGGTACTTGCGCTTCAGCGCCTCGCTGCCGTAGTGGAGGATGTAGGGCGCAGCGATGGCGCAGCGATGTCCGAATGTAGGGCGCAGCGATGTCCGAATGCAGGGAGAAACCGATCCCGGTCAGGCCGGCCCGACCGATCTCTTCGATGACCACGGCGCTGTAGAGGAAGTCCGCGCCCATCCCGCCATACTCTTCCGGCAGGT  >  NC_008463/5131579‑5131874

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑