| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_008463 | 6,205,906 | Δ1 bp | intergenic (‑11/+186) | PA14_RS28345 ← / ← PA14_RS28350 | type VI secretion system tip protein VgrG/Hcp family type VI secretion system effector |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_008463 | 6,205,903 | 0 | C | . | 99.7% | 465.8 / ‑2.5 | 290 | intergenic (‑8/+189) | PA14_RS28345/PA14_RS28350 | type VI secretion system tip protein VgrG/Hcp family type VI secretion system effector |
| Reads supporting (aligned to +/- strand): ref base C (0/0); major base . (131/158); minor base T (1/0); total (132/158) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 300 total aligned reads displayed.
ACGGGGCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTCCCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTT > NC_008463/6205753‑6206019 | cGGGGCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTcc < 2:5814144/151‑1 (MQ=31) gggCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccct < 2:9511379/151‑2 (MQ=14) gggCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTccct < 2:1068950/151‑2 (MQ=14) aGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCTAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgatt < 1:558131/151‑1 (MQ=0) gTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcg > 2:6827999/1‑151 (MQ=11) tCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcga < 1:4027648/151‑1 (MQ=11) tCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcga < 1:2424451/151‑1 (MQ=11) cGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcgat > 2:1328822/1‑151 (MQ=11) gAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcgatt < 2:7269247/151‑1 (MQ=11) gAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcgatt < 2:9002518/151‑1 (MQ=11) gAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcgatt < 1:8711894/151‑1 (MQ=11) gAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACcgattcgatt < 1:8326005/151‑1 (MQ=11) ggCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTc < 2:4983541/151‑1 (MQ=11) gCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcc > 1:3158981/1‑151 (MQ=11) gAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctg > 2:2568115/1‑151 (MQ=11) gAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTccta < 2:5353415/151‑2 (MQ=11) aaCGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTGGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTcctgc > 2:7847141/1‑151 (MQ=2) ggctggctGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACAGATTCTATTGTcctgcctg > 2:8506481/1‑151 (MQ=2) gctggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTgg < 2:3405911/151‑1 (MQ=11) gctggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTgg > 1:5391284/1‑151 (MQ=11) tggctgATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcg < 1:1198373/151‑1 (MQ=11) ggctgATGGCTTCGCGGCCGCTGAAGGAGAGCCCCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTT‑TTCCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGgcgc > 2:4219713/1‑151 (MQ=2) tgATGGCTTCGCGGCCGCTGATGGAGAGCACCAGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCggg < 2:1896395/151‑1 (MQ=2) aTGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCg < 2:8278656/151‑1 (MQ=11) tGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCga < 1:637584/151‑1 (MQ=11) tGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCga > 1:7411233/1‑151 (MQ=11) ggCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCgag > 1:11117940/1‑151 (MQ=11) gCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCgaga > 1:1808603/1‑151 (MQ=11) gCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCgaga > 1:3257523/1‑151 (MQ=11) cTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGAc < 2:7745224/151‑1 (MQ=11) cTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGAc > 2:8639511/1‑151 (MQ=11) ttCGCGGCCGCTGAAGGTGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACa > 1:8421142/1‑151 (MQ=2) cgcgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAg > 1:2520564/1‑151 (MQ=11) cgcgGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAg > 2:5238470/1‑151 (MQ=11) ggCCGCTGAAGGAGAGCACCTGCAGGTCGTTGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgc < 2:6246765/151‑1 (MQ=2) gCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcg < 1:8789464/151‑1 (MQ=11) ccGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgc > 1:5688004/1‑151 (MQ=11) cGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgcg > 2:6916538/1‑151 (MQ=11) cGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgcg > 1:6091651/1‑151 (MQ=11) gCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgcgc > 1:8157138/1‑151 (MQ=11) gCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGgcgcgc > 1:3741736/1‑151 (MQ=11) cTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCa > 1:10765081/1‑151 (MQ=11) cTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCa < 2:143759/151‑1 (MQ=11) cTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCa < 2:5861607/151‑1 (MQ=11) tGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAg > 1:2110180/1‑151 (MQ=11) gAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAgg > 1:9214469/1‑151 (MQ=11) aGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCt > 1:6593474/1‑151 (MQ=11) aGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCt < 1:791570/151‑1 (MQ=11) ggAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTc < 1:7208400/151‑1 (MQ=11) agCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGTAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACGGGCGCAGGCGACCGATTCGATTGACCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATc > 2:1719739/1‑151 (MQ=2) agCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATc < 1:5793349/151‑1 (MQ=11) agCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATc > 2:3205126/1‑151 (MQ=11) gCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCg < 2:11350299/151‑1 (MQ=11) gCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCg < 1:8693882/151‑1 (MQ=11) cACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCgg < 1:9754804/151‑1 (MQ=11) cACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCgg < 2:3496665/151‑1 (MQ=11) cACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCgg < 1:3024483/151‑1 (MQ=11) aCCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGa > 1:6316053/1‑151 (MQ=11) aCCGGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGa < 2:6574357/151‑1 (MQ=2) ccTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGaa < 1:10041888/151‑1 (MQ=11) ccTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGaa < 2:1214445/151‑1 (MQ=11) ccTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGaa < 1:9914939/151‑1 (MQ=11) ccTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGaa < 1:9481679/151‑1 (MQ=11) cTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAg > 2:9576860/1‑151 (MQ=11) gCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCt < 1:6476600/151‑1 (MQ=11) gTCGAGGGCGAGGCCGTCGATGGCGAGGCTGTAATGGGTCTGGTTGGCGGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGccg > 2:7421659/1‑150 (MQ=2) gTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCt < 1:1510136/151‑1 (MQ=11) gAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTaca > 1:7000824/1‑151 (MQ=11) gAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTaca > 2:7278504/1‑151 (MQ=11) gggCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTacaac > 1:6112415/1‑151 (MQ=11) ggCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTacaaca > 2:5391717/1‑151 (MQ=11) ggCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCAGCCTacaaca > 2:1982273/1‑151 (MQ=2) cGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACaaa < 2:4271191/151‑1 (MQ=11) gAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAg > 1:4950543/1‑151 (MQ=11) gAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAg < 1:7792223/151‑1 (MQ=11) gAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAg > 2:4109339/1‑151 (MQ=11) aGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGc < 2:2622455/151‑1 (MQ=11) ggCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCTCAGGCTCGATCGGAAGCTGCCTACAACAAAGCg < 2:8248178/151‑1 (MQ=2) gCCGTCGATGGCGAGGCTGAAATCGGTCTGGTTTGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCgg < 2:6437651/151‑1 (MQ=2) cGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCa < 2:10362907/151‑1 (MQ=11) tCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATc > 1:8497762/1‑151 (MQ=11) tCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATc < 1:45273/151‑1 (MQ=11) tCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATc > 1:4178419/1‑151 (MQ=11) tCGATGGCGAGGCTGAAATGGGTCTGGTGGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATc < 1:43665/151‑1 (MQ=2) gATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGa > 2:4712959/1‑151 (MQ=11) gATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGa > 2:2865848/1‑151 (MQ=11) gATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGa < 2:1578213/151‑1 (MQ=11) aTGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGAc < 1:9082379/151‑1 (MQ=11) gAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGgc < 2:2467241/151‑1 (MQ=11) aGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGgcg > 1:7335414/1‑151 (MQ=11) aGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGgcg < 1:5310434/151‑1 (MQ=11) gCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGcgcg > 1:10622481/1‑151 (MQ=11) cTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCgg > 1:3520238/1‑151 (MQ=11) cTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCgg < 1:1699621/151‑1 (MQ=11) cTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCgg < 2:965567/151‑1 (MQ=11) tGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCggg > 2:6627548/1‑151 (MQ=11) tGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCggg < 2:9066595/151‑1 (MQ=11) gAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGc > 2:4076446/1‑151 (MQ=11) gAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGc < 1:9547965/151‑1 (MQ=11) aaaTGGGTCTGGTTGGCTGCTGCGAACATCCGTTGT‑CCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCt > 2:6872509/1‑151 (MQ=11) | ACGGGGCGTTCGCCGACCAGCTCCAGGTCGAAGGCGAACGGCTGGCTGATGGCTTCGCGGCCGCTGAAGGAGAGCACCTGCAGGTCGAGGGCGAGGCCGTCGATGGCGAGGCTGAAATGGGTCTGGTTGGCTGCTGCGAACATCCGTTGTCCCCTCACTGGCGCAGGCGACCGATTCGATTGTCCTGCCTGGCGCGGGCGAGACAAGGGCGCGCAGGCTCGATCGGAAGCTGCCTACAACAAAGCGGCATCGACCCGGCGCGGGCTT > NC_008463/6205753‑6206019 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |