| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_008463 | 4,590,213 | 0 | T | C | 23.3% | 1516.9 / inf | 554 | T254T (ACT→ACC) | PA14_RS21015 | site‑specific integrase |
| Reads supporting (aligned to +/- strand): ref base T (215/209); new base C (66/63); total (282/272) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
Only 100 of 561 total aligned reads displayed.
GCAGGAGGCCGATAGAGCCGGATTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACCACATGCGTGCCGTGCTG > NC_008463/4590063‑4590363 | cAGGAGGCCGATAGAGCCGGATTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTc < 1:7846789/151‑1 (MQ=33) agagCCGGATTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTcc < 1:2713500/151‑1 (MQ=33) agCCGGATTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCgg < 1:136297/151‑1 (MQ=34) ccGGATTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGca > 2:2976906/1‑151 (MQ=35) ggATTCGCCGATGACGACCAGTTGTTCACCGTCAACCGGTTCTCACCGCACTTCGAGAGCACGGTGTTGAACTCCGACCAGGTCGAAGCCATGTACCGGCAGTTGACCGAGAAGGGTGGGGGGCGGATGACCCCGCACCGTTTCCGGcaca > 2:4405115/1‑151 (MQ=11) aTTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACAcc < 1:1210501/151‑1 (MQ=35) cGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTg > 2:10774077/1‑151 (MQ=35) cGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTg < 2:1339678/151‑1 (MQ=35) cGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTg < 1:3960714/151‑1 (MQ=35) cGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTg > 1:11212164/1‑151 (MQ=35) cGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTg > 2:10673600/1‑151 (MQ=14) cGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTg < 1:6961604/151‑1 (MQ=14) ccGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGc > 1:3022968/1‑151 (MQ=14) ccGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGGTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGc > 2:6539731/1‑151 (MQ=14) cGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGcc > 1:1556331/1‑151 (MQ=35) cGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGcc > 2:2791517/1‑151 (MQ=35) gATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGACGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCCCACCCTGGCCa > 2:8830010/1‑151 (MQ=25) aTGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCAc > 2:1958321/1‑151 (MQ=35) tGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCAcc < 2:3398865/151‑1 (MQ=35) gacgacCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCg < 1:2046858/151‑1 (MQ=35) gacgacCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCg < 1:9219313/151‑1 (MQ=35) cgacCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGAc < 1:7609011/151‑1 (MQ=14) gacCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACt < 1:10916694/151‑1 (MQ=14) acCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACtt > 1:7526743/1‑151 (MQ=35) acCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACtt < 2:10967154/151‑1 (MQ=35) acCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACtt < 1:10212400/151‑1 (MQ=14) gttgttCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTtgatg > 1:10586134/1‑151 (MQ=35) ttgttCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTtgatga > 2:7673209/1‑151 (MQ=14) ttCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAgg > 2:8990605/1‑151 (MQ=14) ttCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAgg < 1:5737865/151‑1 (MQ=14) tCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGc < 1:2202223/151‑1 (MQ=35) tCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGc < 2:6346590/151‑1 (MQ=35) aaCGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCAc > 1:7974609/1‑151 (MQ=14) aCGTCAACGGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCAcc > 2:167202/1‑151 (MQ=25) aCGTCAACCGGTTCTCACCGCACTACAAGTGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGACGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGGCCACCATGGCCACCGACTTGATGAAGGCAcc > 2:10587394/1‑151 (MQ=255) cGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCAccc > 1:7738357/1‑151 (MQ=14) gTCAGCCGGTTCTCTCCGCACTACAAGAGCAAGGTGAGGAACTGCGACCAGGTCGAAGCCTTGTACCGGTAGTTGACCGTGTGGGGTGGGGTGCGGATGAGTCGGCAGCGGTTCGGGCAGACCCTGGCCACCGGCGGGGGGATGGCACCCg > 2:7335603/1‑151 (MQ=2) gTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCg > 1:8462235/1‑151 (MQ=35) tCAACCGGTTCTCACCGCACTCCAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTAGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGa < 2:5385701/151‑1 (MQ=25) tCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGa < 2:9406454/151‑1 (MQ=35) cAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAg < 1:8999828/151‑1 (MQ=35) cAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAg < 1:4246763/151‑1 (MQ=14) aaCCGGTTCTCACCGCACGACAAGAGCAAGGTGATGAACTCCGACCCGGTCGCTGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGc < 2:6851049/151‑1 (MQ=255) aCCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCg < 2:8235550/151‑1 (MQ=14) gTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAAc < 2:1872942/151‑1 (MQ=35) ttCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACa > 2:4813280/1‑151 (MQ=14) tctcACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACAt < 1:4530608/151‑1 (MQ=14) tcACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATcc < 1:6723750/151‑1 (MQ=37) cACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCa < 2:4162965/151‑1 (MQ=38) aCCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCAc > 2:7544062/1‑151 (MQ=38) gCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTc > 1:3276346/1‑151 (MQ=38) aCTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCAc > 1:3892799/1‑151 (MQ=38) aCTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCAc > 1:1683794/1‑151 (MQ=38) aCTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCAc < 1:1889157/151‑1 (MQ=38) aCTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCAc < 1:3413356/151‑1 (MQ=38) aCTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACCCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATACACCTCAc > 2:3096530/1‑151 (MQ=14) aCAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGaa > 2:916347/1‑151 (MQ=38) aCAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGaa > 2:3850767/1‑151 (MQ=38) cAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAg > 2:2503938/1‑151 (MQ=38) cAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAg < 2:2227590/151‑1 (MQ=38) agCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGcc < 1:6120215/151‑1 (MQ=38) aaGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGAACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGc > 2:5565400/1‑151 (MQ=38) aGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCt < 1:9814496/151‑1 (MQ=38) aGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCt < 1:10052072/151‑1 (MQ=38) gatgaACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAAc < 1:8139307/151‑1 (MQ=38) tgaACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCa > 2:3649508/1‑151 (MQ=38) aaCTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACt < 1:5509672/151‑1 (MQ=38) aCTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTc < 1:6319806/151‑1 (MQ=38) tCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGa < 2:7450029/151‑1 (MQ=38) ccGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGaa > 2:5884078/1‑151 (MQ=38) ccGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGaa > 1:8859470/1‑151 (MQ=38) ccGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGaa > 2:1515613/1‑151 (MQ=38) gACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAata > 2:10173989/1‑151 (MQ=38) aCCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAatat < 1:9918388/151‑1 (MQ=38) aGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCa > 2:11108919/1‑151 (MQ=38) tCGAAGCCATGTACCGTAAGTTGACCGAGAAGGTTGGGGTGCGGTTGAATCCGCACCGTTTCCGGCTCACCCTGGCCACCGACTTGATGAAGGCAGCCGAGCGGAACATCCACCTCACGATGTGCCTGCTCAACCACTCGAATATCCAGac < 2:3946428/151‑1 (MQ=11) tCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGac < 1:4726343/151‑1 (MQ=38) gtaGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGacca < 2:1568795/149‑1 (MQ=38) gAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGacca < 1:3722715/151‑1 (MQ=38) gCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGAccacca > 2:10356028/1‑151 (MQ=39) ccATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCAt < 1:5953643/151‑1 (MQ=40) tGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAg < 2:5007064/151‑1 (MQ=40) tGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAg < 1:730135/151‑1 (MQ=40) aCCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCtc > 1:2657099/1‑150 (MQ=40) ggAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCTGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACAt < 2:3246007/151‑1 (MQ=255) gAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATc < 1:8219552/151‑1 (MQ=40) gAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATc > 2:1718882/1‑151 (MQ=40) aGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGa > 2:9734234/1‑151 (MQ=40) tGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGc > 1:5212312/1‑151 (MQ=40) gACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGcc > 1:5345792/1‑151 (MQ=40) ccGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGa < 1:4109390/151‑1 (MQ=40) gagaAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGAATTGATGAAGGCACCCGAGCGGTACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACt < 1:1956689/151‑1 (MQ=255) agaAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTa < 1:1086023/151‑1 (MQ=40) gaAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTAc > 1:8577301/1‑151 (MQ=40) aGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGATCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGa > 2:858757/1‑151 (MQ=255) tGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACcac > 1:2330620/1‑151 (MQ=255) ggggTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACcaca < 1:5042229/151‑1 (MQ=255) gCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACCACATGcgt < 2:8128957/151‑1 (MQ=255) ggATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACCACAAGcgtgc > 2:11182502/1‑151 (MQ=255) aCTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACCACATGcgtgccgtgc < 1:9588166/151‑1 (MQ=255) | GCAGGAGGCCGATAGAGCCGGATTCGCCGATGACGACCAGTTGTTCAACGTCAACCGGTTCTCACCGCACTACAAGAGCAAGGTGATGAACTCCGACCAGGTCGAAGCCATGTACCGGAAGTTGACCGAGAAGGTTGGGGTGCGGATGACTCCGCACCGTTTCCGGCACACCCTGGCCACCGACTTGATGAAGGCACCCGAGCGGAACATCCACCTCACGAAGTGCCTGCTCAACCACTCGAATATCCAGACCACCATGAGCTACATCGAGGCCGACTACGACCACATGCGTGCCGTGCTG > NC_008463/4590063‑4590363 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |