| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002745 | 607597 = | 107 (0.450) | 8 (0.040) +GCTATCTGAGTCTGAG |
3/432 | 12.2 | 6.3% | coding (2383/2862 nt) | sdrC | MSCRAMM family adhesin SdrC |
| ? | NC_002745 | = 607832 | 150 (0.630) | coding (2618/2862 nt) | sdrC | MSCRAMM family adhesin SdrC | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002745/607799‑607597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTG < NC_002745/607832‑607611 |||||||||||||||| GAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCTGAATCGCTATCTGAGTCTGAGTCTCTTTCCGAATCTGAATCGCTGTCTGAGTCTCAGTCGCGATCTGAGTCCGATTCCCTTTCTGAGTTTGACTCTCTCTCTGggctc > 1:1241199/1‑229 GTCTGAATCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAGTCTGAG < 1:1342225/49‑1 TCTGAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGTC < 2:1226377/38‑1 CTGAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGT > 2:888168/1‑36 GAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTATCTGAGTCTGAG < 1:266090/63‑1 GAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAGTCTGAG < 2:256390/45‑1 TCTGAGTCACTATCTGAGACGAGGTCGCTGTCTAAGTCTGAGTCGCTGTCTAGATCTGAGTCGATGTCTAAGTCTGAATCGCTATCTGATTCTGAATCGCTATCTGAGTCTGGGTCGCTATCTGAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAGTCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAA < 1:765989/234‑1 CGCTATCTGAGTCTGAGTCGCTGTCTGAGTCTGAG < 1:727003/35‑1 gcgGAGTCTGAGTCGTAGGCGGTGTCTGAGTCTGTATCCGTATCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAATCTGAATCTCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGACTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCTGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTG < 2:474192/231‑1 |||||||||||||||| GAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAGTCTGAGTC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_002745/607799‑607597‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TCGCTGTCTGAGTCTGAGTCGCTATCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAATCTGAATCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAGTCGCTATCTGAGTCTGAATCGCTGTCAGAATCTGAGTCGTTGTCTGAGTCCGAATCGCTATCTGAATCTGAGTCGCTATCCGAATCTGAATCGCTGTCTGAATCTGAGTCGCTG < NC_002745/607832‑607611 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |