New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002745	= 612188	114 (0.480)	6 (0.030)	4/448	11.7	5.2%	coding (3746/4158 nt)	sdrD	MSCRAMM family adhesin SdrD
	?	NC_002745	612213 =	110 (0.480)					coding (3771/4158 nt)	sdrD	MSCRAMM family adhesin SdrD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCGACTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/611948‑612188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactcagaCTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAACC  >  NC_002745/612213‑612443                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGATTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCG                                                                                                                                                                                                                                                <  1:484950/234‑1  CTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGACACCGATTCCGACTCAGATAGCGACTCAGACTCAGACAGCGACTCCGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGATTCAGCCAGCGACTCCGATTCAGACAGCGA                                                                                                                                                                                                                                               >  1:1290923/1‑234    CAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGAGATTCAGCTTCAGACAGCGACc                                                                                                                                                                                                                                             >  1:604165/1‑233        CTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGCGACTCAGA                                                                                                                                                                                                                                         >  1:1014323/1‑234        CTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCAGACAGAGATTCAGATTCAGACAGCGACTCCGA                                                                                                                                                                                                                                         >  1:342228/1‑234                    TTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATGCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGA                                                                                                                                                                                                                             >  1:525956/1‑234                      CAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCCGATAGCGACTCAGACTCAGACAGAGATTCAGATTCAGACACCGACTCAGACTCAGATCGCGATT                                                                                                                                                                                                                           >  1:1269710/1‑234                      CAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGACTCAGACAGAGATTAAGATTCAGACACCGACACAGACTCAGATACCGATa                                                                                                                                                                                                                           >  1:507571/1‑233                        GATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTCAGAGTCAGACAGCGATTCCGATTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGCTAGCGACTCc                                                                                                                                                                                                                         >  1:12423/1‑233                                      TTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATACCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCAGACGCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATACAGATTCAGACTCAGACAcaga                                                                                                                                                                                                           >  1:976736/1‑230                                                                                                                                                                                                                                       nnCGACTCAGACTAAGATAGCGATTCAGATTCAGACAGAGGCACTGACTCAGACAGCGACTCAGACTCAGACAGTGATTCAGATACAGATAGCGACTCAGACTCAGATAGCGACGCAGATTCAGAAGGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCT          <  1:1077861/232‑1                                                                                                                                                                                                                                        caaACTCAGACTCAGATAGCGATTCAGATTCAGGCAGCAGCTCAGATTCGAACGGCGACTCAGACTCGGGCAGTGATTCAGATTCAGGTAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTG         <  1:168480/231‑1                                                                                                                                                                                                                                          nACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTT       <  1:454121/233‑1                                                                                                                                                                                                                                          GACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTT       <  1:1443625/234‑1                                                                                                                                                                                                                                            CTCAGACTCAGATAGCGATTCAGATTCAGACAGCG                                                                                                                                                                                                            <  1:1321762/35‑1                                                                                                                                                                                                                                             ttAGACTCAGATAGCGATTCAGAATGAGGCTGCGACTCAGATTCGGACAGCGACTCAGACTCCGACAGTGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGACTCAGAGTCAGATAGCGATTCAGCCTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAA    <  1:547075/232‑1                                                                                                                                                                                                                                             gCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAA    <  1:214794/233‑1                                                                                                                                                                                                                                               gGACTCAGATAGAGATTCAGAGTGAGGAACCGAGTCAGCGTCGGAGAGCGATACAGAGTAAGATAGAGATTCAGACTCAGATAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAACC  <  2:739053/233‑1                                                                                                                                                                                                                                               AGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAACC  <  1:284386/234‑1                                                                                                                                                                                                                                               AGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAACC  <  1:914123/234‑1                                                                                                                                                                                                                                                                                                                                                                                                                                                                                          ACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCGACTCAGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/611948‑612188 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gactcagaCTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAGATGCAGGTAAGCACACACCTGTTAAACC  >  NC_002745/612213‑612443

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.