New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002745 = 612200219 (0.810)10 (0.040) 7/460 10.0 4.4% coding (3758/4158 nt) sdrD MSCRAMM family adhesin SdrD
?NC_002745 612207 = 214 (0.800)coding (3765/4158 nt) sdrD MSCRAMM family adhesin SdrD
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCGAC‑‑‑‑‑‑TCAGATTCAGATAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/611967‑612200
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAG  >  NC_002745/612207‑612415
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
TTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATAGCGATTCAGACTCAGACAGCGACTCAGACTCAGATAGTGATTCAGATTCAGACCGCGATTCCGATTCCGATAGCGATTGCGATTTAGAGAGTGAA‑‑‑‑‑‑ACAGATTCAGATAGCGA                                                                                                                                                                                                                   >  1:230360/1‑234
  CAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGAGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATACAGACTCAGATACTGATTCAGACTCAGACAGCGATACAGATTCAGACAGTGACCCAGACTCAGACACTGAC‑‑‑‑‑‑TCAGATCCACATAGCGACT                                                                                                                                                                                                                 >  1:975846/1‑234
    GATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTAAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTTAGACTAAGAAAGCGATTCAGACTCAGATAGCGACTCAGACTAAGATAGAGATTCAGATTCAGACAGCGATTCAGAATAAGACAGTGATTCAGATTCAGACAGCGAC‑‑‑‑‑‑TCAGATGCAGATAGCAACTCA                                                                                                                                                                                                               >  1:1669951/1‑234
      TTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATACAGATTCAGACTGTGATACAGACTCAGACAGCGAC‑‑‑‑‑‑ACAGATTCAGATAGCGACTCAGA                                                                                                                                                                                                             >  1:624676/1‑234
                                   aacCAGACTCCGGCAGCGACTCACGCTCAGATAGCGAATCAGAATCGGACAGCGATTCAGACTCAGAGAGCGAGTCAGAAGCAGACAGCGATGCAGACACAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGACTCAGACAGCGAT‑‑‑‑‑‑TCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCG                                                                                                                                                                                <  2:187837/231‑1
                                                      CTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGCGATTCGGACTCAGACAGCGAT‑‑‑‑‑‑TCAGATTCAGACAGCGACTCAGACTCGGATAGCGATTCAGATTCAGACAGCGACTCAGACTCGGAtnnnnn                                                                                                                                                             >  1:187837/1‑228
                                                           ACTCAGATGGAGACTCAGATTCTGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATATCGACTCAGACTCAGATTGAGATTCAGATTCAGACAGCGATTCAGATTCAGACTCTGATTGCGATTCAGACTCCGACTCCGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCG                                                                                                                                                              <  1:193726/234‑1
                                                                                                                                                                                        GATTCAGACAGCGATTCAGATTCAGACAGCGAC‑‑‑‑‑‑TCAGATTCAGATAGCGACTC                                                                                                                                                                                                                <  2:308268/53‑1
                                                                                                                                                                                                      TTCAGATTCAGACAGCGAC‑‑‑‑‑‑TCAGATTCAGATAGCG                                                                                                                                                                                                                    <  1:781155/35‑1
                                                                                                                                                                                                                 agAGCGAC‑‑‑‑‑‑TCAGATTCAGATAGCGACTCAGACTCAGACAGCTATTCAGATTCAGAGAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGAGTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAG  <  2:1094301/232‑1
                                                                                                                                                                                                                                        GATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGA                                                                                                                                                                                     >  1:1054583/1‑38
                                                                                                                                                                                                                                          TAGCGACTCAGACTCAGATAGCGATTCAGATTCAG                                                                                                                                                                                      <  1:59382/35‑1
                                                                                                                                                                                                                                              GACTCAGACTCAGATAGCGATTCAGATTCAGACAGCG                                                                                                                                                                                <  1:1722356/37‑1
                                                                                                                                                                                                                                              GACTCAGACTCAGATAGCGATTCAGATTCAGACAGCG                                                                                                                                                                                <  1:457749/37‑1
                                                                                                                                                                                                                                              GACTCAGACTCAGATAGCGATTCAGATTCAGACAGCG                                                                                                                                                                                <  2:854206/37‑1
                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
TTCAGATTCAGATAGCGATTCAGACTCAGACAGCGATTCAGATTCAGACAGCGACTCAGACTCAGATAGCGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGACAGTGATTCAGATTCAGACAGCGAC‑‑‑‑‑‑TCAGATTCAGATAGCGA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/611967‑612200
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gaCTCAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGATTCGGACAGCGACTCAGACTCAGACAGTGATTCAGATTCAGATAGCGACTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGTGACTCAGATTCGGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGTGATTCAGACTCAG  >  NC_002745/612207‑612415

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.