New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_002745 = 776241257 (0.950)14 (0.050)
+GCCGGCAAGGT		 6/442 10.2 6.1% intergenic (+111/‑228) hisC/SA_RS03870 histidinol‑phosphate transaminase/5'‑3'‑deoxyribonucleotidase
?NC_002745 1952189 = 192 (0.710)intergenic (+194/+237) SA_RS09785/SA_RS09790 aromatic acid exporter family protein/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AAGCACTTTTAAATGTAGGGTGTATTACGCGACCATTTCCAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/776009‑776241
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGC  >  NC_002745/1952189‑1952263
                                                                                                                                                                                                                                          |||||||||||                                                                           
AAGCACTTTTAAATGTAGGGTGTATTACGCGACCATTTCCAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCG                                                                                       <  2:503350/234‑1
 AGCACTTTTAAATGTAGGGTGTATTACGCGACCATTTCCAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCGC                                                                                      <  1:426054/234‑1
                            GCGACCATTTCCAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAA                                                            >  2:1417438/1‑234
                                               GTTAGAATTACAATTGGTTTTAAAGAACAACATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATT                                         >  1:199343/1‑234
                                                       TACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCA                                 <  1:1417438/234‑1
                                                           ATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA                             >  2:1183670/1‑234
                                                           ATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA                             >  2:478686/1‑234
                                                           ATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCA                             >  2:982716/1‑234
                                                           ATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC                                      <  1:1628858/225‑1
                                                           ATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTC                                      >  2:1628858/1‑225
                                                           ATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATCTTCGTTCAGTCA                             >  1:386536/1‑234
                                                                               ggaaAAAATGTTAGAAGTTTTTTCAAATTTTAAATCAGAATAGTAAGGGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCGAACCCCAGCTTGCTTTGCCGGTAGAAATTGGGAATCCAATTTCTCTGTATTGGGGCCCCACCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTC         <  1:1232487/230‑1
                                                                               TGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTC         <  1:1183670/234‑1
                                                                               TGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTC         <  1:478686/234‑1
                                                                               TGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAATAAGTGGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCGCAACTTGCATTGTCTGTAGAAATTGGGAATCGAATTTCTCTGTGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTC         <  2:607748/234‑1
                                                                                      ATGTTAGAAGGTTTATCAAATTTTAAATACAAATAGTAAGTGGGGGGTGGGACAGAAATGATATTTTCCCAAAATTTATTGCGTCGTCCCACCCCAACTTGCATGGGCTGTAGAAATTGGGAATCCAATTTCTCTGGGTTGGGGCCCCGCCGGCAAGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGC  <  2:199343/234‑1
                                                                                                                                                                                                                                          |||||||||||                                                                           
AAGCACTTTTAAATGTAGGGTGTATTACGCGACCATTTCCAACTGGTGTTAGAATTACAATTGGTTTTAAAGAACAAAATGATAAAATGTTAGAAGTTTTATCAAATTTTAAATACGAATAGTAAGTGGGGAGTGGGACAGAAATGATATTTTCTCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGCCTGTAG‑AATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_002745/776009‑776241
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGC  >  NC_002745/1952189‑1952263

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.