| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | 3904777 = | 301 (1.030) | 28 (0.100) | 19/278 | NT | 8.5% | coding (109/1041 nt) | pstS | periplasmic phosphate binding protein, high‑affinity |
| ? | CP009273 | 4487998 = | NA (NA) | intergenic (+241/‑91) | intB/insC1 | pseudogene, integrase homology;IS, phage, Tn; Phage‑related functions and prophages; KpLE2 phage‑like element; P4‑like integrase/IS2 repressor TnpA | |||||
GCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3904925‑3904777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGA > CP009273/4487998‑4488143 GCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCT < 2:3038378/150‑1GCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCT > 1:3482492/1‑150 CAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACT < 2:681842/150‑1 CAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACT < 2:5051654/150‑1 CAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCC > 1:1502843/1‑150 CAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCC > 1:5197442/1‑150 ATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATC > 2:937585/1‑150 GAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTC > 1:3566746/1‑150 TCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACA > 2:4258216/1‑150 CATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA > 1:2265631/1‑150 CATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA > 1:2267243/1‑150 CATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTACTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCA > 1:1361489/1‑150 ACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTT > 1:3729856/1‑150 GTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA < 1:658097/150‑1 GTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTA < 1:660040/150‑1 GTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATGGTCTTAATACTAGTTTTTAGAC > 1:4598460/1‑150 GACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATT < 1:2696087/150‑1 CGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACA > 1:3103557/1‑150 CGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACA < 2:4649921/150‑1 CGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACA < 2:4649951/150‑1 ATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGA > 1:516472/1‑150 TCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGT > 1:420483/1‑150 TCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGT > 1:420335/1‑150 CTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTT < 1:3556426/150‑1 GAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA < 2:5011378/150‑1 GAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGA < 2:5011422/150‑1 AGGTGCAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACA < 1:4258216/150‑1 CAACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGA > 2:1247440/1‑150 AACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA < 2:3482492/150‑1 AACCTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAA < 1:3873276/150‑1 CTTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAG > 1:3068663/1‑150 TTCCTAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGA < 1:1700159/150‑1 GCCAACAAACAATGCTTTATGAATCCTCCCAGGAGACATTATGAAAGTTATGCGTACCACCGTCGCAACTGTTGTCGCCGCGACCTTATCGATGAGTGCTTTCTCTGTGTTTGCAGAAGCAAGCCTGACAGGTGCAGGTGCAACCTTCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP009273/3904925‑3904777‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TAGACTGGCCCCCTGAATCTCCAGACAACCAATATCACTTAAATAAGTGATAGTCTTAATACTAGTTTTTAGACTAGTCATTGGAGAACAGATGATTGATGTCTTAGGGCCGGAGAAACGCAGACGGCGTACCACACAGGAAAAGA > CP009273/4487998‑4488143 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |