Predicted mutation | |||||||
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evidence | seq id | position | mutation | freq | annotation | gene | description |
RA | CP009273 | 161,068 | A→C | 27.5% | intergenic (+47/‑149) | hrpB → / → mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP009273 | 161,068 | 0 | A | C | 27.5% | 79.7 / 23.6 | 67 | intergenic (+47/‑149) | hrpB/mrcB | putative ATP‑dependent helicase/fused glycosyl transferase and transpeptidase |
Reads supporting (aligned to +/- strand): ref base A (27/21); new base C (2/17); total (29/38) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 7.88e-04 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAA > CP009273/160920‑161213 | cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CAt > 2:240676/1‑150 (MQ=255) cGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CAt > 2:240691/1‑150 (MQ=255) tGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCa > 2:2160509/1‑150 (MQ=255) gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAg > 1:4721589/1‑150 (MQ=255) gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAg > 1:4721485/1‑150 (MQ=255) gAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAg > 1:4425266/1‑150 (MQ=255) aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAgc > 1:267020/1‑150 (MQ=255) aGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAgc > 1:267059/1‑150 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCCgcgc > 1:3902661/1‑150 (MQ=255) gTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGGATTCGTAAGGGTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CCTGAgcgc > 1:3902710/1‑150 (MQ=255) gCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAgcgcgc > 1:2714881/1‑150 (MQ=255) cAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCCGCGCGCa > 1:345230/1‑150 (MQ=255) aaaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCCGCGCGCAc > 1:6596/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACg > 2:1906020/1‑150 (MQ=255) aaaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACg > 1:1616711/1‑150 (MQ=255) aaaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCCGCGCGCACGt > 2:751756/1‑150 (MQ=255) aaGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGtt > 1:5125952/1‑150 (MQ=255) gagaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCTACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCACTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACggtgt > 2:369694/1‑146 (MQ=255) ttaTGAATGGGGGTTATCCCAAACATGTCTGGCCGGACGACCGGGAAAAT‑ACTGCCCCGACGCGACGGACTAAAATGTTTTGGTATGGTTGGTTTTCTCCCTCTCCCTGTGGGAGTGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTtcac < 2:3926215/148‑1 (MQ=25) agaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGtgggg > 1:1135123/1‑146 (MQ=255) gaTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CCTCAGCGCGCACGtggggg > 1:29913/1‑145 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACgggggcgc > 1:689679/1‑143 (MQ=255) aTGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGtgggccc > 1:689527/1‑144 (MQ=255) tgactgggCTTTCTCCCAAACTTGTGTGGCGGGACTCCCCGGAAATT‑CCTGCACCGACGCGAGTGACTAAATTTTTTACTAATGGTTGGTTTACACCCACTCCCTGTGGTTTGGGGCGGGGTTGCGGG‑‑CATCAGCGCGCACGTtcaccct < 2:4367411/145‑1 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGtggggggc > 1:4492161/1‑143 (MQ=255) tGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGtggcccca > 2:4784897/1‑143 (MQ=255) ataGGGCGTTATCCCAAACTTGTCTGGCGGCACGACCCGTAAAAT‑CCGGCACCGACGCGACGGACTAAAATGTATTCGTATGGTTGTTTTTCTCCCCCACCCTGTGGGCGTGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTtcaccctca < 2:3862594/148‑1 (MQ=255) aGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTgcacccccacc > 2:3247833/1‑150 (MQ=255) gggtttACCCAAAACTTGTCTGGCCGCCCG‑CCCCGCAAATCAGTCCCCCGACCCGCCGCACTAAAAAGTTTTCGTATGGTTGTTTTACTCCCCCCCCGTGGGGGAGTGGGCGGGGGTGTGGC‑‑CATCAGCGCGCACGTTcaccctcaccct < 2:2043161/146‑1 (MQ=255) aTCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTgggcccgcacccacaccaa > 2:3718055/1‑143 (MQ=38) aTCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTggacccgcaccccagacca > 2:2039189/1‑143 (MQ=38) aTCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTGGCCCCGCACCCCAAaccc > 2:698298/1‑149 (MQ=38) cgtgggtGGCGGGCCGCCCGGGCAATT‑ACCGCCCCGCCGCGACGGCCGAAAATGTATGGGACTGGTGGTTTTTCCCCGCCGCCGGGGGGCTGTGGCCGGGGGTGTGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCa < 2:3379490/144‑1 (MQ=255) cATGTGGGGCCGGACGCCCCGACAAAA‑ACTCCCCCCCCGCCCCGGACCAAATTTTTTTGTTATGTTGGGTTTTCCCCCACCCCGGGTGGGTGGGGGCGGGGGTGGGGC‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCa < 2:4172100/150‑1 (MQ=255) ttggggggCGGGACGACCCGCAAAAT‑CCTCCCCCGCCGCCGGGGCCGAAAATGTTTTCGTTGGGTTGTTTTTCGCCCCCGCCGGGTGGTCGTGGGGGGGGGGGGGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCaa < 2:2408545/144‑1 (MQ=255) gtgggcccGGCCGCCCCGGAAAAT‑CCTGCCCCGCCGCGAGGTACTAAAATTTTTGCGAAAGGTGGGTTTTCCCCCGCGCCGGGTGGTTGTGGGCCGGGGTGGGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAgg < 2:2830631/144‑1 (MQ=255) gacgccCCGCCAAAT‑ACTGCCCCGCCGCGCCGGCCTAAAAAGTTTTCGTACGGTTGGTTTTCCCCCTCGCCCTGGGGGAGTGGGCCGGGGTGAGGG‑‑CATCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 2:3307403/150‑1 (MQ=37) gacgccCCGCCAAAT‑ACGGCCCCGACGCGCCGGACTAAAATGTATTCGTACGGTTGGTTTTCGCCCCCCCCCTGGGGGAGCGGGCCGGGGTGAGGC‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGa < 2:4366834/150‑1 (MQ=255) gccccGGCAAAT‑CCTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAAGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCg < 1:4501169/148‑1 (MQ=255) gacCCGGCAAAT‑ACTGCACCGACGCGCCGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAAGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCACGGGAGAGGGGACCg < 1:4501227/150‑1 (MQ=255) aaT‑ACGGCCCCGCCGCGCCGGACGAAAAATGTTTCGTAGGGTTGTTTTGCCCCCTCGCCCGGGGGGTGGGGGCGGGGGTGAGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGcac < 2:5148172/150‑1 (MQ=255) cggccccgccgCGCGGGACTAAAATGTTTTCGTATGGTTGGGTGTCCCCCCCCCCGTGTGGGAGGGGGCGGGGGTGCGGC‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAt < 1:3423828/145‑1 (MQ=255) tGCCCCCACGCGACGGACTAAAAAGTATTCGTTCGGTTGGTTGTCTCCCTCCCCCTGGGGTTGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCCCGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAAtt < 2:3818401/150‑1 (MQ=255) cgcgccgGACGAAAAATTTTTCTTTGGGTTGGTTTTCGCCCACGCCGGGGGGTTGGGGGCGGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTgagaga < 2:2403733/150‑1 (MQ=255) gcgaggGACTAAAATTTATTCTTTTGTTTGTTTTTCACCCTCCCCGTGTGGTTGTGGGCGGGGGGGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGat < 2:3210416/150‑1 (MQ=255) ggactAAAATGTTTTCGTATGGTTGTTTTTCTCCCTCTCCGTGGGGGTGTGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtctt < 2:3374050/150‑1 (MQ=255) aaattgTATTGTTATGGTGGGTTTTCTCCCTCGCCGTGGGGGAGTGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATAtcttcttct < 2:820846/145‑1 (MQ=255) aattttATTGGTATGGTTTTTTTTCTCCTTATCCTGTTGGTTGGGGGCCGGGTTTTGGC‑‑CATCAGCGATCACGTTCACACTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTATTCTg < 1:2160509/145‑1 (MQ=255) ttCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTGCACCCTAACACAAAAACAAACCCACAACGGAGAGGGGTACGATCAAGCAAAAAATTTGAGATATATAATATTATTTCTTGtt > 2:1203682/1‑149 (MQ=12) cGTATGTTTGTTTTACCCCCTCCCCGGGTGGGTGTGGGCCGGGGTGCGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAAc < 1:3251046/150‑1 (MQ=255) ttCCCCCACCCCGTGTGGCTGCGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaa < 1:2173436/150‑1 (MQ=255) tactccctctccctGTGGTTGCGGGCGGGGGTGAGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaa < 2:267059/148‑1 (MQ=255) taccccctccccttGTGGTTGTGGGCGGGGGTGCGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaaa < 1:2173555/146‑1 (MQ=255) tcgccccctccccGGGGGGGAGGGCGGGGGGGGGGGGCCCTCAGCGCGCACGGTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGaa < 1:3786592/147‑1 (MQ=255) ccccctcccccgGGGGGTGTGGGCGGGGGGGTGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAAt < 1:3489389/148‑1 (MQ=255) tccgtGTGGTTGTGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCtt < 2:2405599/150‑1 (MQ=255) ccctGTGGTTGTGGGCGGGGGTGTGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCttt < 2:4656722/150‑1 (MQ=255) ggtgtgggCCGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCt < 2:803118/145‑1 (MQ=255) gtgggCGGGGGTGAGGC‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 2:3621272/148‑1 (MQ=255) gggggCGGGGGTGCGGC‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 2:1616711/148‑1 (MQ=255) gcgggCCGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 2:2001330/148‑1 (MQ=255) gcgggCCGGGGGGTGGG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 2:3619545/148‑1 (MQ=255) gagGGCCGGGGTGAGTG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 2:2001180/150‑1 (MQ=255) gagGGCCGGGGTGAGCG‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGaa < 2:3619552/150‑1 (MQ=255) ggggTGCGGC‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCg < 1:46482/150‑1 (MQ=255) gggggcggg‑‑CCTCAGCGCGCACGGTCACCCTCACCCTCACCCTCGCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTGCTTCTGTCTTGTAACAGAAGAACAGAAACTCGGGCTTTTGCGCCTGAATATTGCgg < 2:3300276/144‑1 (MQ=255) ggg‑‑CCTCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGaaaa < 2:4492161/150‑1 (MQ=255) | CGTGAGGTGCAAAAAGAGATGAAAGGGCGTTATCCCAAACATGTCTGGCCGGACGACCCGGCAAAT‑ACTGCACCGACGCGACGGACGAAAAAGTATTCGTAAGGTTGGTTTTCTCCCTCTCCCTGTGGGAGAGGGCCGGGGTGAGGG‑‑CATCAGCGCGCACGTTCACCCTCACCCTAACCCTCTCCCTCAAGGGAGAGGGGACCGATCGAGCACAAATTTTGAGAGATATCTTCTTCTGTCTTGTAACAGAAGAACAGAAAATCGGGCTTTTGCGCCTGAATATTGCGGAGAAAA > CP009273/160920‑161213 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |