| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 877,980 | G→T | 6.1% | Q71K (CAA→AAA) | deoR ← | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 877,980 | 0 | G | T | 6.1% | 817.7 / 6.2 | 256 | Q71K (CAA→AAA) | deoR | deoxyribose‑5‑phosphate‑inducible deoxyribose operon transcriptional repressor; repressor of nupG and tsx |
| Reads supporting (aligned to +/- strand): ref base G (114/117); new base T (23/2); total (137/119) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.65e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 259 total aligned reads displayed.
AACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACT > CP009273/877831‑878129 | aaCGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTg < 1:4138941/150‑1 (MQ=255) ggcggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATc > 1:1714055/1‑150 (MQ=255) gcggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCg > 2:1632062/1‑150 (MQ=255) ggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCt > 2:2941981/1‑150 (MQ=255) ggTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGACGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCt > 2:886478/1‑150 (MQ=255) gTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTGCACCACGCGGGATTTTTGATAGCtt > 1:726683/1‑150 (MQ=255) tAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTACACCACGCGGGCTTTTTGATCGCTTa > 1:4464606/1‑150 (MQ=255) aaaGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTATTCCACCAGGCGGGATTTTTTATCGCTTAAc > 2:3597749/1‑150 (MQ=255) aaGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTaaaa > 1:2066892/1‑148 (MQ=255) aaGCGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACa < 2:3234066/150‑1 (MQ=255) aGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGCTTTTTGATCGCTTAACAg > 1:2901240/1‑150 (MQ=255) aGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAg < 1:804435/150‑1 (MQ=255) aGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTACACCAGGCGGGATTTTTGATCGCTTAACAg > 1:2901256/1‑150 (MQ=255) aGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGCCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAg < 1:387856/150‑1 (MQ=255) ggATTTCAGTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGt < 2:3129433/150‑1 (MQ=255) ttCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTACACCAGGCGGGTTTTTTGATCGCTTAACAGGTAAtg > 2:2299117/1‑150 (MQ=255) ttATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtggctg < 2:462704/150‑1 (MQ=255) tATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAttgctgg > 2:700514/1‑150 (MQ=255) tATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtggcggg > 1:2953650/1‑150 (MQ=255) aTCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAtggctggc < 1:4387258/150‑1 (MQ=255) tCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACAAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTACACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCa > 2:236706/1‑150 (MQ=255) aaTCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACt < 2:1764450/150‑1 (MQ=255) gCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGGTTTTTGTTCGCTTAACAGGTAAAGGCGGGCACTgcgc > 1:1050865/1‑150 (MQ=255) cTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGcgcg > 1:322432/1‑150 (MQ=255) ttCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCgg > 2:3326553/1‑150 (MQ=255) ttCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCgg > 1:5173396/1‑150 (MQ=255) cAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGtt < 2:3946228/150‑1 (MQ=255) ataatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTcc < 1:1202573/150‑1 (MQ=255) ataatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCACGCGGGATTGTTGATCGCTTAACAGGTAATGGCGGGCCCTGCGCGGTTcc > 2:4865424/1‑150 (MQ=255) taatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCa > 1:5234726/1‑150 (MQ=255) taatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCa > 1:2521060/1‑150 (MQ=255) taatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTACACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCa > 2:4890130/1‑150 (MQ=255) aatCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAg < 1:3522305/150‑1 (MQ=255) tCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTATTCCACCAGGCGGGCTTTTTTATCGCTTAAAAGGTAATTGCTGGCACTGCGCGGTTCCAGa‑a > 1:3690685/1‑150 (MQ=255) ccACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑Ac < 2:482962/150‑1 (MQ=255) cACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACa > 2:4013021/1‑150 (MQ=255) aCGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTGTTTGGTGCACCACGCCGGCTTTTTGTTAGCGGAACAGGTTATGGCTGGCACTGCGCGGGGCCCGA‑ACaa > 1:1332516/1‑150 (MQ=255) cGGCGTGGTTGTGCCACAGTCAAAAAAGAGGTTCTGATCGGGTTCTACCAGCGTCGCATCCAGTTTTGCCGCCCGGCGTTTTTATTCCACCATGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAat < 2:233745/150‑1 (MQ=255) cGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATAGCTTAACAGGTAATGGCTGGCACTTCGCGGTTCCAGA‑ACAat > 1:761788/1‑150 (MQ=255) gCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCAGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAatat < 1:3024133/150‑1 (MQ=255) cGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAAtata < 2:672489/150‑1 (MQ=255) cGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAAtata < 2:4822609/150‑1 (MQ=255) ggtggtgCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCGACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTGCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAgcc < 2:3093632/150‑1 (MQ=255) gCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTGTTTATTCCACCAGGCGGGATTTTTGATCGCTTAAAAGGTAATGGCGGGCACTGCGCGGTTACAGA‑ACAATATAGCCGCCGAg > 2:4456404/1‑150 (MQ=255) tCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTACACCAGGCGGGATTTTTTATCGCTTAACAGGTAATGGCTGGCACAGCGCGGTTCCAGA‑ACAAAATATCCGCCGAGCAAAacg > 1:2034229/1‑150 (MQ=255) tCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTATTCCACCAGGCGGGATTTTTGATCGCTTAACACGTAATGGCGGGCACTGCGCGGTTCCACA‑ACAATATAGCCCCCGAGCaaaaac > 1:4667370/1‑148 (MQ=255) aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTGTTACACCAGGCGGGCTTTTTTTTAGCTTAACAGGTAATGGCGGGCCCGTCGCGGGTGCAGA‑ACAAAATAGCCGCCGAGCaaaaacac > 1:1870700/1‑146 (MQ=255) aaaaaaGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAacgac < 2:1478218/150‑1 (MQ=255) tgagGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGgcg < 2:4201097/149‑1 (MQ=255) tGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATAAAGCCGCCGAGCAAAACGACGGGCGCACTGTgg > 2:1683087/1‑150 (MQ=255) gATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAGGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGAAAAACGACGGGCGCACTGTGgt < 1:627352/150‑1 (MQ=255) gATCGGGTTCTACCAGCGTCGCAGCCAGTTTGGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAAGGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGgt < 1:4888665/150‑1 (MQ=255) aTCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTACTGGCTGGCACTGCGCGGGTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTgggt > 2:3812718/1‑148 (MQ=255) aTCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTGTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATTGCCGCCGAGCAAAAAGACGGGCGCACTGTGgtt > 2:4825244/1‑150 (MQ=255) tCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGTATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATCGCCGCCGAGCAAAACGACGGGCGCACTGTGgttg < 1:5014081/150‑1 (MQ=255) ggTTCTACCAGCGTCGCAGCCAGATTTGCCGCCCGGCGTTTTTCTTCCACCAGGCTGGATTTTTGATCGCTTAACTGGTAATGGCTGGCACTGCGCGGTTCCTGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTc < 2:402269/150‑1 (MQ=255) ttCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCCGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCACA‑ACAATATAGCCGCCGAGCAAAACCACGGGCGCACTGTGGGTGTTCAg > 2:5026734/1‑150 (MQ=255) ttCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAg > 2:4334905/1‑150 (MQ=255) cTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACGGTGGTTGTTCAGAt > 2:4191946/1‑150 (MQ=255) tcccAGCGTCGCAGCCTGTTTGGCCGCCCGGCGTTTTTCTTCCCCCAGGCGGGATTTTTGATCGCTTAACCGGTACGGGCTGGCACTGCGCGGTTCCAGA‑ACAATATCGCCGCCGAGCAACACGACGGGCGCACTGTGGTTGTTCAGATc < 1:3945197/148‑1 (MQ=255) tACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCCGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATCGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATc < 1:4028952/150‑1 (MQ=255) tACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATc > 2:1930405/1‑150 (MQ=255) tACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTATTACACCACGCGGGATTTTTTTTAGCTTTAAAGGTAATTGGTGGCACTGCGCGGGTCCCGA‑ACAAAATATCCCCCCAGCAAAAACAACGGCGCACAGTTGTTTTTCAGAta > 1:4984646/1‑149 (MQ=255) cAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTTATCGATTAACAGTTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATcgcg < 1:963944/150‑1 (MQ=255) aGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGcga > 2:3417418/1‑150 (MQ=255) gTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTGTTACACCACGCGGGATTTTTGTTAGCGTAACAGGTAATGGCTGGCACAGCGCGGTTACAGACACAA‑AAATCCGCCGAGCAAAACCACCGGCGCACAGTGGTTGTTCAGATCGcgacga > 1:1172109/1‑150 (MQ=255) gTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGcgacga < 1:3832571/150‑1 (MQ=255) tCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGcgacgga > 2:5106348/1‑148 (MQ=255) tCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGaa < 1:2480562/150‑1 (MQ=255) tCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGaa < 1:2491539/150‑1 (MQ=255) cAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCAt < 2:3520302/150‑1 (MQ=255) cAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCAt < 2:3522001/150‑1 (MQ=255) cAGTTTTGCCGCCCGGCGTTTTTATTACACCCGGCGGGCTTTTTGATCGCATAAAAGGTAATGGCTGGCACAGCGCGGTTCCAGA‑ACAATAAAGCCGCCGAGCAAAACCCCGGGCGCACGGTGGTTGTTCAGATCGCGACGAAACGTcct > 2:4816767/1‑148 (MQ=255) tttGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTcc < 1:3414010/150‑1 (MQ=255) cgccCGGCGTTGTTCTTCCCCCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGGTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAAc < 2:3864342/150‑1 (MQ=255) ccGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAAcccc < 2:1562931/150‑1 (MQ=255) ggCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCaa < 1:2567480/150‑1 (MQ=255) cGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGc > 1:2772345/1‑150 (MQ=255) gTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCa > 2:3027222/1‑150 (MQ=255) gTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCa > 1:2607451/1‑150 (MQ=255) gTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCa < 1:1198539/150‑1 (MQ=255) tttttCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAg > 2:4304125/1‑150 (MQ=255) ttttCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGGTGTTCAGATCGCGACGACTCGTCATCTCCGAAACCCCAAGCAgg > 2:2148874/1‑150 (MQ=255) ttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGggcggc > 1:165277/1‑150 (MQ=255) ttcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGggcggc < 2:1212433/150‑1 (MQ=255) tcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAACACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGggcggcg < 1:317208/150‑1 (MQ=255) tcCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGggcggcg > 2:2626259/1‑150 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCCCTGCGCGGTTCCAGA‑ACAATATCGCCGCCGAGCAACACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCtt < 1:196464/150‑1 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCtt < 1:4602813/150‑1 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCtt < 2:5173396/150‑1 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCtt < 2:2547304/150‑1 (MQ=255) ggCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCtt < 2:3260800/150‑1 (MQ=255) gCGGGATTTTTGATCGCTTAACCGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCttt < 1:944676/150‑1 (MQ=255) cGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTa > 2:4943347/1‑150 (MQ=255) ggATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAg < 2:286875/150‑1 (MQ=255) aTTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGAt < 1:3177268/150‑1 (MQ=255) tttttGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATCGCCGCCGAGCAACACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATg < 1:521274/150‑1 (MQ=255) tttttGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATg < 1:2342160/150‑1 (MQ=255) tttGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTa < 2:4528655/150‑1 (MQ=255) gATCGCTTAACAGGTAATGGCGGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACt < 1:1316033/150‑1 (MQ=255) | AACGGCGGTAAAAGGGATTTCATTATCAATCGCTTCAATAATCCACGGCGTGGTGGTGCCACAGTCAAAAAAGAGGGTCTGATCGGGTTCTACCAGCGTCGCAGCCAGTTTTGCCGCCCGGCGTTTTTCTTCCACCAGGCGGGATTTTTGATCGCTTAACAGGTAATGGCTGGCACTGCGCGGTTCCAGA‑ACAATATAGCCGCCGAGCAAAACGACGGGCGCACTGTGGTTGTTCAGATCGCGACGAATCGTCATCTCCGAAACCCCAAGCAGGGCGGCGGCGTCTTTAAGATGTAACT > CP009273/877831‑878129 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |