| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 2,170,724 | G→T | 19.9% | intergenic (‑41/+267) | gatY ← / ← fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 2,170,724 | 0 | G | T | 19.9% | 199.6 / 6.9 | 96 | intergenic (‑41/+267) | gatY/fbaB | D‑tagatose 1,6‑bisphosphate aldolase 2, catalytic subunit/fructose‑bisphosphate aldolase class I |
| Reads supporting (aligned to +/- strand): ref base G (35/37); new base T (13/8); total (49/47) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.28e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170575‑2170873 | tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAATATAATg > 2:1987495/1‑150 (MQ=255)tttCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTCAAAATATAATg > 2:4616500/1‑150 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaa < 1:4818774/150‑1 (MQ=255) tCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTATATTTAAAAAAAAAATTaa > 1:2522353/1‑150 (MQ=255) cTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGaaa < 2:4463116/150‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAat < 1:4762431/150‑1 (MQ=255) tACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAat < 2:3694056/150‑1 (MQ=255) accaccACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAatt < 1:3083802/150‑1 (MQ=255) ccacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTAttt < 1:3927872/150‑1 (MQ=255) cacTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTg < 1:603958/150‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttt < 1:4739655/150‑1 (MQ=255) ttGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGttt < 1:4739741/150‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaa < 2:22190/150‑1 (MQ=255) aTCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAAATAAATTATtttttttttt > 2:3504050/1‑148 (MQ=255) tCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTaaa < 1:3203460/150‑1 (MQ=255) cGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAat < 1:974359/150‑1 (MQ=255) tttCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAatat < 1:345687/150‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCg < 2:416786/150‑1 (MQ=255) tCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCg < 2:1509140/150‑1 (MQ=255) gagaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCgag < 2:485418/150‑1 (MQ=255) gaTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGAt < 1:2771144/150‑1 (MQ=255) aTTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATAAAATGAAAATATTTTTTTTTAAAAATCCCGATa > 2:3870585/1‑150 (MQ=255) ttGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATaa < 2:4187871/150‑1 (MQ=255) tgtgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAAc < 2:1299867/150‑1 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGTTTTAAAAATATAATGTAATTTTTTTTTTTTTAATATCTAGAttaaga > 2:3273150/1‑145 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGTAATTATTTTTTTTTTAATATAGAGATAACGa > 2:214503/1‑150 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTAAATTAATTTTTTTTAAAAATAGAGATAAcca > 2:307510/1‑148 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGGTTTAGATTTAAAAATATAAAGAAAATATTTTTTTTTAAATATACAGATAAAGa > 2:5080309/1‑150 (MQ=255) tgAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTAAAAATATAAAGAAATTATTTTTTTTTTAATATAGGGTTAACGa > 2:213609/1‑150 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATTAAAATATTTGTTTTTAAATATCGAGATAACGAt > 2:767628/1‑150 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATAGAGATAAAGAt > 2:767951/1‑150 (MQ=255) gAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAAAGAAATTATTTTTTTTTAAATATAGAGATAACGAt > 2:767565/1‑150 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTGTTTTGTTTTGAAAAAATAATTTAATTATTTTTTTTTTAATTTGTAGATTACgcata > 1:1012205/1‑146 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTAAAAATATAATGAAATTATTTTTTTTTAAATATAGGGATAAAGATca > 2:2566909/1‑150 (MQ=255) atatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGGTTTTTGTTTGAATATATAATTTAAATATTTTTTTTTTTATTAAGAGATAAAGATca > 1:1012937/1‑150 (MQ=255) tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcac < 1:1108668/150‑1 (MQ=255) tatTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcac < 1:547573/150‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAGTGAAATTATTTGTTTTTAAATATCGAGATAACGATcac‑a < 2:377956/150‑1 (MQ=255) atTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATcac‑a < 2:377881/150‑1 (MQ=255) ggAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTGGATTTCAAAAAAAAAAGAAAATATTTTTTTTTTAATATAGAGATTACGATAAC‑AAAAACGACac > 2:2271383/1‑149 (MQ=255) gaaTAACCGCCGCGCTGTGCGTTTTTCAGCATCTTCTTTGTCGATACCAGTTAAATTTTCATATCCTGTCTTTTGTTTTCTATTTAAAAATATAATTAAATTATTTGTTTTTAAATATCGAGATAACGATCAA‑AAAAACGACAATATGaa < 2:4464957/148‑1 (MQ=255) cATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAATATAATGAAATTATTTTTTTTTAAAAATATAGATAAAGATAAA‑AAAAACGACAAAATTaaa > 2:1693891/1‑150 (MQ=255) ccgccgCGGTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGAAAATTTACATATCCTTTCGTTTTTTTTCGATTTAAAAATATAATTAAATTATTTTTTTTAAAATATCTAGATAACTATAAA‑AAAAACGACAATATGAAAattat < 1:3480247/150‑1 (MQ=255) cgcgGTGTGCTTTGTTCAGAATCTGCTTTGTCGATACCACGTACATTTTAATATCCTGTCGTTTTTTTTCGTTTTAAAAATATATTTAAATTATTTTTTTTTAAATATCGAGATACCGATCAC‑AAAAACGACAATATGAAAATTATTCga < 2:2776971/150‑1 (MQ=255) cgcgCTGTGCGTTGTTCAGAATCGGCTTTGTCGAAACCACGTACATTTACATATCCTGTCGTTTTTTTACTATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCga < 2:2777110/150‑1 (MQ=255) cTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAATATAATTTAAATATTTTTTTTTAAATATAGAGGTTAAGATAAA‑AAAAAAGAAAAAATTAAAATTATTAgagggg > 1:2167970/1‑148 (MQ=255) gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTGAAAAAAAAATTAAAATAATTTTTTTTAAATATAGAGATAAACAAAAC‑AAAAAAGAAAAAAATAAAAATATTAgaggaggg > 1:3057885/1‑148 (MQ=255) gtgCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAAAAAAGAAAATATTTTTTTTTAAATAACGATATAAACATCAC‑AAAAAAGACAAAATTAAAAATATTCGTGGtgtg > 1:3056662/1‑150 (MQ=255) tgCGTTGTTCAGCATCTGCTTTGTCTATACCACGTAAATTTTCATATCCTGTCTTTTTTTTTCTATTTCAAAATAAAATGAAATTATTTTTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑a < 2:1266266/150‑1 (MQ=255) gttgttCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTAAAAATATAATTTAATTATTTGTTTTTAAATATAGATATAAAGATCAA‑AAAAAAAACAAAATTAAAATTATTAGAGGAGTG‑AAA‑g > 2:1934109/1‑150 (MQ=255) aTCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTTGTTTTAAAAAAATAATTAAAATATTTTTTTTTTTATTTAGAGATTAAGATAAA‑AAAAAAGACAAAAAGAAAAATATTATAGGAGTT‑AAATTGCaaaaaaa > 2:1021149/1‑150 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTTTTTTAGATTTAAAAAAAAAAAAAAAATATTTTTTTTTAAAAAAAGAGATAAACATAAC‑AAAAAAAAAAAAAAGTAAAATATTAGATGAGTGTAAT‑GACaaaaaaaa > 2:498811/1‑149 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTAAAAAAAAAATTAAATTATTTTTTTTTAAAAATAGTGAAAAAGAAAAA‑AAAAAAAAAAAAATTTAAAATATTAGAGGATTG‑TAA‑GGGaaaaaaaaa > 1:2103648/1‑148 (MQ=255) tCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTGTGTTTGTGTTTTTAAAAAAAAATGAAATTATTAGTTTTTATATATAGATATAAACAAGACAAAAAACAAAAAAATTAAAA‑TATACGAGTATTG‑AAA‑TCaaaaaaaaaa > 1:2103640/1‑148 (MQ=255) tgatttGTCGATACAACTTACATTTTAATATCCTTTCGTTTTTTTTCTATTTAAAAATATATTTAAATTATTTTTTTTTAAATATCTATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGc < 2:2522353/147‑1 (MQ=255) cGATACCACTTATATTTTCTTATCATGTCGTTTTTTTTCTTTTTAAAAATATAATTAAATTATTTGTTTTTAATTATCGATATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGAt < 2:4467665/150‑1 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTTTTTTTTGGATTTCAAAAAATAATGAAAATATTTTTTTTTAAATATAGAGATAAAGAACAC‑AAAAACGACAAAATGAAAATTATTAGAGGCGTG‑TAA‑GGCAAAAAAAAGGCCTCCCGCTa > 2:5223672/1‑150 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATTTAAATATTTTTTTTTAAATATAGAGATAACGATAAC‑AAAAAACACAATATTAAAAATATTCGAGGAGTG‑AAA‑GGCCAAAAAAAGGCCACCCGATa > 2:5224471/1‑150 (MQ=255) gATACCACGTACATTTTCATATCCTGTCGTTTGTTTTAGATTTCAAAAAAAAATGAAATTATTTTTTTTTTAATATAGAGATAAAGATAAC‑AAAAAAGAAAAAATTAAAATTATTAGAGGAGTG‑TAA‑TGCAAAAAAAACGCCAccccaga > 2:5224608/1‑146 (MQ=255) aTACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAATATAATGAAATTATTTTTTTTTAAATATAGATATAAAGATCAC‑AAAAAAGAAAATATGAAAATTATTAGTGGATTG‑AAA‑GGCAAAAAAAAGGGCTCCCGCTat > 2:2010191/1‑149 (MQ=255) aTACCACGTACATTTTCATATCCTGTCGTGTGTTTTCGATTTCAAAAAAAAATGAAATTATTTTTTTTTATATATCGAGATAAAGATAAC‑AAAAACGACAATATGAAAATTATTAGAGGTGTG‑AAA‑GGGCAAAAAACTGCCTACCGGTAg > 2:3495883/1‑150 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTGTGTTTTGGATTTGAAAATATAATTTAATTATTTTTTTTTTTATATCGGGTTTAAGATAAC‑AAAAAACACAAAATGGGCAGTATTGGGGGGGTG‑GAT‑GGGAAAAAAAAGGCCGCCCgcgagg > 2:4057998/1‑145 (MQ=255) tACCACGTACATTTTCATATCCTGTCGTGTGTTTTAGATTTAAAAAAATAATGTAAATATTTTTTTTTTAATATCGAGATGACGATCAC‑AAAAAAGACAAAATGAAAAATATTAGAGGAGGG‑ACA‑TGCGAAAAAACGGCCTCCCGAGAgg > 2:4057948/1‑150 (MQ=255) cttaaaTTTTAATATCCTGTGTTTTTTTTTCTATTAAAAAATATATTGAAATTATTTTTTTTTAAATATCTATATACCGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGc < 1:2431808/145‑1 (MQ=255) ttaatttttCATATCCTGTCTTTTGTTTTATATTTAAAAATATAATTAATTTTTTTTTTTTTAAATATCTATATAACTATAAA‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGcc < 1:4616500/145‑1 (MQ=255) ttaatttttCATATCCTGTCGTTTTTTTTCTTTTTCAAAATATAATGAATTTATTTTTTTTTAAATTTCTAGATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGcc < 1:1987495/145‑1 (MQ=255) tttCATATCCTGTCGTGTTTTTTAGATTTAAAAATATAAAGAAATTATTTTTTTTTAAAAATAGAGCTAACGATAAC‑AAAAAAGACAAAAATAAAAATATTAGAGGAGTG‑AAA‑GGCAAAAAAAAGGCCAACCCATATGGAAGCCGTAGCa > 2:5166828/1‑150 (MQ=255) ttaaatatCCTGTCGTTTGTTTTCTATTTAAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACTATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCa < 2:2979368/146‑1 (MQ=255) cATATCCTGTCGTTTGTTTTCTATTACAAAATATAATTAAATTATTTGTTTTTAAATATCTATATAACGAACAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAg < 1:2554921/150‑1 (MQ=255) tttCCTGTCGTTTTTTTTCGATTACAAAATAAAATGAAATTATTTGTTTTTAAATATCGATATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTg < 2:1144225/148‑1 (MQ=255) atCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGATATACCGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTgc < 1:2596408/150‑1 (MQ=255) cGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGtt < 2:2455835/150‑1 (MQ=255) ttgtttTCGATTTCAAAATATATTTAAATTATTTTTTTTTAAATATCGATATAACGATCAA‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt < 1:395322/150‑1 (MQ=255) ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt > 1:2959834/1‑150 (MQ=255) ttgtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGttttt > 1:3971814/1‑150 (MQ=255) tgtttTCTATAACAAAATATATTCAATTTATTTTTTTTTAAATATCGATAAAACTAAAAA‑AAACACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTa < 1:4422524/150‑1 (MQ=255) gtttTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTAt > 1:3341732/1‑150 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 1:1847854/1‑150 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGcc > 1:1847877/1‑150 (MQ=255) ttCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATGCGAGGAGTG‑AAA‑GGCAAAATAACGGCCTCCCGATAGGGAAGCCGTAGCACAGTGCGCGTGTGGTTATGcc > 1:448815/1‑150 (MQ=255) aTTTCAAAATATAATGAAATTATTTTTTTTTAAATATCGCGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 2:4713653/150‑1 (MQ=255) aTTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAACACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGAt < 1:2575872/150‑1 (MQ=255) tttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATg > 1:4631949/1‑150 (MQ=255) ttCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGc > 1:811197/1‑150 (MQ=255) tCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGTGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCg > 2:71171/1‑150 (MQ=255) tCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGGTTTTATGCCGGATGCg > 2:73531/1‑150 (MQ=255) aaaaTATAATGAAATTATTTGTTTTTAAATGTCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt > 1:339988/1‑150 (MQ=255) aaaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGACGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt > 2:4348510/1‑150 (MQ=255) aaaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgt > 2:1036777/1‑150 (MQ=255) aaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg < 2:4439827/150‑1 (MQ=255) aaaTATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGgtg > 1:4716834/1‑150 (MQ=255) tataTTAAAATTATTTTTTTTTAAATATCGAGATAACGAGCAC‑AAACACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa < 2:458584/150‑1 (MQ=255) tataATGAAATTATTTGTTTTTAAATATCGAGATAACGAACAC‑AAACACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa < 2:459403/150‑1 (MQ=255) tataATGAAATTATTTGTTTTTAAATAGCGAGATAACGATCAC‑AAAACCGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaa < 2:5167729/150‑1 (MQ=255) ataATGAAATTATTTGTTTTTAAATATCGAGATACCGATCAC‑ACACACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa < 2:4109959/150‑1 (MQ=255) ataATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTaaa > 1:3794438/1‑150 (MQ=255) taATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAAc > 1:16344/1‑150 (MQ=255) aaTGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACa > 2:1974281/1‑150 (MQ=255) gAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAc > 2:3019841/1‑150 (MQ=255) | TTTCTACCACCACTTGCATCGTTTCGAGATTGTGAATATTGAATGCCGGAACCGCATAACCGCCGCGCTGTGCGTTGTTCAGCATCTGCTTTGTCGATACCACGTACATTTTCATATCCTGTCGTTTGTTTTCGATTTCAAAATATAATGAAATTATTTGTTTTTAAATATCGAGATAACGATCAC‑AAAAACGACAATATGAAAATTATTCGAGGAGTG‑AAA‑GGCAAAAAAACGGCCTCCCGATAGGGAAGCCGTAGCAAAGTGCGCGTGTTTTTATGCCGGATGCGGTGTAAACATAC > CP009273/2170575‑2170873 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |