| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,039,409 | T→G | 19.5% | intergenic (‑149/+118) | ygfF ← / ← gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,039,409 | 0 | T | G | 19.5% | 449.8 / 40.5 | 270 | intergenic (‑149/+118) | ygfF/gcvP | putative NAD(P)‑dependent oxidoreductase with NAD(P)‑binding Rossmann‑fold domain/glycine decarboxylase, PLP‑dependent, subunit (protein P) of glycine cleavage complex |
| Reads supporting (aligned to +/- strand): ref base T (53/157); new base G (45/14); total (99/171) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.51e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 274 total aligned reads displayed.
TTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGA > CP009273/3039260‑3039556 | tttGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGt < 2:4928782/150‑1 (MQ=255) ttGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGtt < 2:2813466/150‑1 (MQ=255) tGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTc < 1:2956030/150‑1 (MQ=255) ttttCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTcccc > 2:4584858/1‑150 (MQ=255) tttCCGAGAAAAATTATTTCGTTGACGTATCTTTGATATTGCTAACAAACTGGCTCAATCTTAAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCt < 1:3748257/150‑1 (MQ=255) ccGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTcccccccc > 1:2551583/1‑146 (MQ=255) attaattCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACCCCCTCAcccc > 2:1465599/1‑149 (MQ=255) attaattCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCGCCCCCCAAacca > 2:4104542/1‑149 (MQ=255) attaattCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGGCCGCACCCCAAccca > 2:943042/1‑149 (MQ=255) aattCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCtc‑tc < 2:1362275/150‑1 (MQ=255) ttCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑Tccc < 2:1606330/150‑1 (MQ=255) tCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCCCACCCAAAaccacaaccc > 1:3713427/1‑143 (MQ=255) ttGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCAACCACACCCAC‑ACCCCcaa > 1:1733624/1‑150 (MQ=255) aCGTATCTTTGAGATTGCTAACAACCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAggg < 2:3045885/150‑1 (MQ=255) gTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGc < 1:1903416/150‑1 (MQ=255) gTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCGCACCCAAACCCTC‑TCCCCAAAGGGGc > 2:4269350/1‑150 (MQ=255) tATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCg < 2:1988062/150‑1 (MQ=255) tATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCg < 2:1834537/150‑1 (MQ=255) aTCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGa < 2:4392079/150‑1 (MQ=255) gagaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGAc < 2:4206606/150‑1 (MQ=255) gagaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTACCCACACCCAAAACCAA‑AACCCCAAAGGGCgggggggc > 1:3853704/1‑148 (MQ=255) agaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCACACCCGAACCCAC‑ACCCCAAAGGGGCGAGGGGAca > 1:3915354/1‑149 (MQ=255) gaTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTTCCCGCCCCCCAAACCAC‑AACCCAAAAGGGCgggggggcgg > 1:646006/1‑146 (MQ=255) aTTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGt < 2:1391831/150‑1 (MQ=255) tGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCACACCCAAAACCACAACCCCAACGggggggggggcggtgt > 2:893060/1‑144 (MQ=255) gCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCACACCCAAACCCAC‑ACCCCCAAAGGGCGCGGGGGCAGTcgg > 1:5012415/1‑148 (MQ=255) cTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGa < 2:4651286/150‑1 (MQ=255) cTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGa < 2:2046088/150‑1 (MQ=255) aaCACACTGGCTCAATCTTCAATGTTGGCACGCTTGTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑c < 2:4033070/150‑1 (MQ=255) cAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACACCCGAACCCAC‑TACCCCAAGGGGCGGGGGGCCTGTCTGTG‑CAc > 2:250900/1‑150 (MQ=255) aaaCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCCCCCCCCAAACCAC‑AACCCCACCCGGCGCGGGGCCGGTCTGAG‑GAca > 1:235592/1‑149 (MQ=255) aaCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACtt < 1:1983137/150‑1 (MQ=255) aCTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACttt < 2:3777795/150‑1 (MQ=255) cTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACtttt < 2:694837/150‑1 (MQ=255) tGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTg < 2:3907998/150‑1 (MQ=255) gCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTa < 2:4779793/150‑1 (MQ=255) gCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTa < 1:2049477/150‑1 (MQ=255) gCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTa < 2:4327467/150‑1 (MQ=255) tCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACt < 1:2074206/150‑1 (MQ=255) tCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACt < 1:4156767/150‑1 (MQ=255) tCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCAC‑TACCCAAAGGGGCGAGGGGACGGTCTGAG‑CACGTTTGTAca > 2:3014660/1‑149 (MQ=255) cAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACtt < 2:811035/150‑1 (MQ=255) tCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCTCACCCAAACCCAC‑ACCCCAAACGGGGGAGGGGGCTGTCTGTG‑CACGTTTTTTATTTGTCAt > 1:4804663/1‑150 (MQ=255) aaTGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCt < 1:3500643/150‑1 (MQ=255) aTGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCCCCCCCAAACCCAC‑ACCCCAAACGGGCGGGGGGGCGGTCTGTG‑CCCGTTTGTAATTTTTGATcat > 1:3382293/1‑148 (MQ=255) aTGTGGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTg < 2:765549/150‑1 (MQ=255) ttGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACt < 2:1542810/150‑1 (MQ=255) ttGGCACGCTTGTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACt < 2:3869680/150‑1 (MQ=255) tGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCAAAACCAC‑ACCCCCAAGGGGCGAGGGGACTGTGTGGG‑CCCGTTTGTACTTTTTCAAATGAcaa > 2:106592/1‑148 (MQ=255) tGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCGCACCCCAACCCAC‑TCCCCAAATGGGGGAGGGGCCTGTCTGAG‑CACATTTTTAGTTTTTCATATGAcaa > 2:1204203/1‑148 (MQ=255) ggCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTaa < 1:2102446/150‑1 (MQ=255) cGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAg < 2:4167569/150‑1 (MQ=255) cGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAg < 2:3472352/150‑1 (MQ=255) gCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAgg < 2:2209512/150‑1 (MQ=255) ttttCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCCCACCCAAACCCGC‑ACCCCCAAGGGGCGGGGGGCCTGTCTGAG‑GACGTTTGTTCTTTGTGATCTTACAAAAAAGgcg > 1:795372/1‑150 (MQ=255) ttCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGcc < 2:3995735/150‑1 (MQ=255) tCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCCCACCCCAACCCAC‑ACCCCCCACGGGGGCGGGGCCGGGCGGAG‑CCCCGTTTTTCGGTGTCATCTGACTAAAAAAGccccc > 2:2639883/1‑149 (MQ=255) tCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCg < 2:4865667/150‑1 (MQ=255) cTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTCCCCCCCCCCCAACCCAC‑AACCCCCACGGGCGCGGGGGCCGTCTGGG‑CCCCGTTGTACGATGTCCGCAGACTAAAAAATCGcccccccg > 2:3529707/1‑144 (MQ=255) gCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCt < 1:1531922/150‑1 (MQ=255) gCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCt < 1:2380472/150‑1 (MQ=255) cccTTTCTGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCtt < 1:1865761/150‑1 (MQ=255) cccTTTCTGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCGGGTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCtt < 1:2784473/150‑1 (MQ=255) cccTTTCCGGGAGAGGGCCGGGGTGCGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑GCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCtt < 1:1067861/150‑1 (MQ=255) cccTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGTGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCtt < 2:1115335/150‑1 (MQ=255) ccTTTCTGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCttt < 1:3101758/150‑1 (MQ=255) ccTTTCTGGGAGAGGGCCGGGGTGAGGGTAAAGATTCGCGCCCGTGCCGGCCTGTTCCCCTCACCCTACCCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCttt < 1:4083362/150‑1 (MQ=255) ccTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCACACCCGAAACCAC‑ACCCCCAACGGGGGCGGGGGCTGTCTGGG‑CACGTTTGTACTTTGTCATATGACTAAAAAGGCGCCGCCGCGccagt > 2:2734299/1‑147 (MQ=255) ttCAGGGAGAGGGCCGGGGTGAGGGTATTTTTTCGCGCCAGTGCCGGCCGTTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTTCTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGa < 1:1418149/150‑1 (MQ=25) cAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCGCACCCAAACCCAC‑ACCCCCAAGGGGCGAGGGGCCTGTCTGAG‑CACTTTTGTTCTTTGTCAACTGACAAAAAAGGCGCCGAAGCGCCgttttaaa > 2:1264225/1‑145 (MQ=255) aGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTGCCCGCACCCAAACCCCC‑ACCCCAAATGGGCGCGGGGGCAGGATGAG‑GACATTTTTAATGTTTAATCTGAATAAAAAAGCGCCGCAGCGCCGTTAGaaaa > 2:1633035/1‑150 (MQ=255) aGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTACCCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCGGACTAAAAAGGCGCCGAAGCGCCTTTAGaaaa < 2:2302051/150‑1 (MQ=255) gggAGAGGGCCGGGGTGAGGGTAAAGATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGCCTAAAAAGGCGCCGAAGCGCCTTTAGAAAAt < 2:1977273/150‑1 (MQ=255) ggAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCACACCCAAACCCAC‑AACCCAAATGGGCGAGGGGACTGTCTGAG‑CACTGTTGTAATTTTTCATATTACTAAAAATGCGCCCAAACGCCGTTATAAAAtc > 2:3436899/1‑149 (MQ=255) gagGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTc < 1:3607576/150‑1 (MQ=255) gagGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTc < 2:1412109/150‑1 (MQ=255) gggCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGa < 1:5037174/150‑1 (MQ=255) gCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAAt < 1:1156474/150‑1 (MQ=255) ccGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATc < 1:4560880/150‑1 (MQ=255) ccGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATc < 2:186505/150‑1 (MQ=255) cGGGGTGAGGGTAAATAGTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCa < 2:3374777/150‑1 (MQ=255) ggggTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGGTGCCCACACCCAAACCCAC‑TCCCCAAAGGGGCGAGGGGACTGTGTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCATTAGAAAATAGTCGAATCAg > 2:362382/1‑150 (MQ=38) tGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGaa < 2:1705567/150‑1 (MQ=255) aGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAAtt < 1:1283412/150‑1 (MQ=255) aGGGTAAATAGTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAAtt < 2:5114266/150‑1 (MQ=255) gggTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTa < 1:520336/150‑1 (MQ=255) gggTAAATAGTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTa < 1:426777/150‑1 (MQ=255) gTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACt < 2:2551583/150‑1 (MQ=255) tAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTg < 2:485525/150‑1 (MQ=255) aaaTATTCGCGCCAGTGCCGGCCTGTTTCCCACAACCAAAACCAC‑AACCCAAAAGGGCGAGGGGTCTGTATTAG‑CACTTTTTTAATTTTTCATATTAAAAAAAATGCGCCGAAGCGCCCTTAGAAAATAATAGAATCAGTGAATTACTgg > 2:2891639/1‑150 (MQ=255) aaTATTCGCGCCAGTGCCGGCCTGGTCCCCACACCCAAACCCAC‑AACCCAAACGGGGGAGGGGCCTGTCGTAGACAGTTTT‑TACTTTGTCATAATACAAAAAATGCGCCGAAACGCCTTTAGAAAAAATTAGAATAAATGTATTACAGGt > 2:3048770/1‑150 (MQ=255) atTCGCGCCAGTGCCGGCCTGGTCACCACCCCCAAAACCCC‑AACCCAAAGGGGCGAGGGGACAGTATGGG‑CACATTTTTTCTTTTTAAACAGACAAAAAAAGCGCCCCAGCCCCGTTAGAAAAAAGTCGAAACAGTGAATAACAGGTAtt > 2:5155928/1‑150 (MQ=255) gcCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTaa < 2:4804728/150‑1 (MQ=255) aGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCg < 2:445437/150‑1 (MQ=255) gTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCgg < 2:3915354/150‑1 (MQ=255) cGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACg < 1:923955/150‑1 (MQ=255) gCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCa > 2:2462435/1‑150 (MQ=255) gCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCa < 1:4833139/150‑1 (MQ=255) tGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGa > 2:563980/1‑150 (MQ=255) tGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGa < 1:1431609/150‑1 (MQ=255) | TTTGTTTTTCCGAGAAAAATTAATTCGTTGACGTATCTTTGAGATTGCTAACAAACTGGCTCAATCTTCAATGTTGGCACGCTTTTCCCCCTCGCCCTTTCAGGGAGAGGGCCGGGGTGAGGGTAAATATTCGCGCCAGTGCCGGCCTGTTCCCCTCACCCTAACCCTC‑TCCCCAAAGGGGCGAGGGGACTGTCTGAG‑CACTTTTGTACTTTGTCATCTGACTAAAAAGGCGCCGAAGCGCCTTTAGAAAATAGTCGAATCAGTGAATTACTGGTATTCGCTAATCGGTACGCAGGA > CP009273/3039260‑3039556 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |