| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,416,666 | T→G | 11.3% | intergenic (+113/+116) | yhdZ → / ← rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,416,666 | 0 | T | G | 11.3% | 549.0 / 7.6 | 252 | intergenic (+113/+116) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon |
| Reads supporting (aligned to +/- strand): ref base T (112/102); new base G (33/4); total (146/106) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.86e-05 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 261 total aligned reads displayed.
GCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGA > CP009273/3416517‑3416815 | gCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt < 2:4689201/150‑1 (MQ=255)ccgaactaGGCCATTTTTATCGCAGGTAATCAATTATTTTAAGGTTCGTACTAAAACCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCATTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCt < 2:4856025/143‑1 (MQ=18) gTACGCGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTc < 2:1932199/150‑1 (MQ=255) gTACGAGGGAATTTTTATCGCTGTTAATCCATTATTTGAATGTTCGTTCTAAAAGCAAAATGGCCAGCCTTTCGGTGGGCCTTTCGTTTGATTTGTTTTCGGGCTTTTTATGGCGGGCGTCCGGCCCGCCACCCTCCGGGCCGTTGCTTc < 2:53689/150‑1 (MQ=21) tACGCGGGCATTTTTATCGCAGGTAATCCATTATTTGAATGTGAGTGCGAAACGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTGGATGGCGGGCAGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCg < 2:5005881/150‑1 (MQ=21) tACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCg < 2:2986403/150‑1 (MQ=255) cGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑a > 2:3675160/1‑150 (MQ=255) gAGGGCATTTTTAGCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAACGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑aa < 2:2015145/150‑1 (MQ=255) aGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AAc > 1:817927/1‑150 (MQ=255) tttttATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGC‑AACGTTCaa > 2:1319351/1‑150 (MQ=255) tATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AAACTTCAAAtac > 1:2457163/1‑148 (MQ=255) aTCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCg < 2:200477/150‑1 (MQ=255) aGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTGGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTccc > 1:3267263/1‑150 (MQ=255) aaaaaccgatacaccgaacgcccctgtctttctagtgagactttctttttatttgatgccgggggaattaattcCTGGCAGTTTAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCcggcg < 2:3188731‑M2/76‑1 (MQ=255) aattattTGAATTTTAGTTCTAAAACCAAAAAGGCCATCCTTTCGGATGCCATTTCGCTTTATTTTATGTCTGGCTGTTTTGGGGGGGCGTCCTGCCCCCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGAtt < 1:1108365/149‑1 (MQ=17) aTTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACCTTCAAAACCGCTCCCCGCGGAttt > 2:971071/1‑150 (MQ=255) aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTcc > 2:4804329/1‑150 (MQ=255) aTTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGAGTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑CACCGTCCAATACGCACCCGGCGGGTTTGTcc > 1:2049725/1‑150 (MQ=18) ttGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGCTTTGTCCt > 2:565027/1‑150 (MQ=255) tGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGTGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTa < 1:1273749/150‑1 (MQ=255) tGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑AACGTTCAAATACGCTCCCGGCGGCTTTGTCCTa > 2:4403513/1‑150 (MQ=255) ccaacggcccagtctttcgactgcgcctttcgttttatttgaggccgggggaattaattcCTGGCAGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTc < 1:5010191‑M2/90‑1 (MQ=255) tGTTAGTTCTAAAAGCAAAAAGGCCATCCTTTCGGAGGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCg < 2:1794921/150‑1 (MQ=255) tcgTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCATTTCGATTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGga < 1:2061404/148‑1 (MQ=255) tAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACGCgggc > 2:2321912/1‑149 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑CACGTTGAAATCCGCGCCCGGCGGGTTTGGCCGACGCggggg > 1:3307710/1‑148 (MQ=17) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGgag < 1:1684477/150‑1 (MQ=255) aGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑AACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTACTCGGgag > 1:321505/1‑150 (MQ=255) ttCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGAGTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGAGTTGGCCTACTCGGGagag > 2:4303365/1‑150 (MQ=255) gAAAAGCAAAAAGGCCATCGTTGCGTATGGCCTTTGGGTTGATTTGATGTCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAgtgt < 1:2364613/150‑1 (MQ=17) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AAAGGTCAAATCCCCGCCCGGCGGCTTTGTCCGACTCGGGAGAgtgg > 1:4719808/1‑149 (MQ=17) gAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑AACGTTCAAATCCGCTCCCGGCGGCTTTGTCCTACTCGGGAGAgtgt > 2:3764133/1‑150 (MQ=255) aaaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGtt < 2:2569862/150‑1 (MQ=255) aaaaGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATACGCTCCCGGCGGATTTGTCCTACGCGGGAGAGTGtt > 2:2699463/1‑150 (MQ=255) cAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTAGC‑AACGTTTAAATAACCTCCCCCCGGGTTTTTGCGACACGGGGGAGTGTTGAcag > 1:152941/1‑148 (MQ=17) cAAAAAGGCCAACCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCg < 2:4553215/150‑1 (MQ=255) aaaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGGTCAAATACGCGCCCGGCGGATTTGTACTACACGGGAGAGTTTTCAccca > 1:4676522/1‑148 (MQ=17) aaaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTAGC‑AACCTTAAAAAACCCTCCCGGCGGATTTTTCCGACACCGGAGAGTGTTCACCCac > 1:721631/1‑150 (MQ=17) aaaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTTCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGAGTTGTCCTACGCGGGAGAGTGTTCACCGaca > 2:4094101/1‑150 (MQ=255) aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑CACCATCAAAACAGCTCCCCGCGGGGTTGTCCTACTCGGGAGAGTGTTCACCCacaa > 1:4198435/1‑150 (MQ=17) aaGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAAACCGCGCCCGGCGGGTTTTTCCGACACGGGGGAGTGTTGAACGacaa > 1:1548734/1‑150 (MQ=17) aGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCCAATACGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTGAACCGaccaa > 2:3707998/1‑150 (MQ=17) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGTTCGC‑AACGTTAAAATCAGCTACCGGCGGGTTTGTCCTACTAGGGAGAGTGTTAAACGacaaaaaaaa > 1:1718696/1‑148 (MQ=17) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGGGTAGCAAACGTAAAAAACC‑CACCCCGCGGGTTTTTGCAAGACGGGAGAGTGTTGACCCacaaacaaaa > 1:4113129/1‑148 (MQ=12) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGC‑CAACTTAAAAACCGCTCCCCGCGGATTTTTCCGAAACCGGAGAGTGTTCACCCACCAacaaca > 1:2890234/1‑150 (MQ=17) aTCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGC‑AAACTTAAAATAAGCTACCGGCCGATTTGTACTAAAAGGGAGAGTGTTCACCGacaaaaaaaa > 1:3411933/1‑148 (MQ=17) tCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGC‑AACGTTCAAATACGCTCCCGGCGGATTTGTCCAACTCGGGTGAGTGTTCACCGACAAACAAAAg > 1:3903577/1‑150 (MQ=17) ccTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGa < 2:3862637/150‑1 (MQ=255) tttCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCCC‑AACGTTCAAAACCGCACCCGGCGGATTTTTCCTACTCGGGAGAGTGTTCACCCACAAACAACAGATa > 1:2182396/1‑150 (MQ=14) tCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGAGTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATaaa > 2:1854688/1‑150 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATaaaa < 2:315448/150‑1 (MQ=255) cGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATaaaa < 2:313735/150‑1 (MQ=255) ggATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCCACCAACAACAGATAAAAc > 2:2831578/1‑150 (MQ=255) gATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACa > 2:3388630/1‑150 (MQ=255) aTGGCCTTTCGCTTGATTTGATGTCTGGCTGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaa < 2:910981/150‑1 (MQ=255) aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGAGTTGTCCTACTCGGGAGAGGGTTCACCGACAAACAACAGATAAAACaa > 2:1155294/1‑150 (MQ=255) aTGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCCGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGAAAAAACaa > 2:2083104/1‑150 (MQ=255) tGGCCTTTCGCTTTATTTTATGTCTGGCAGTTTTTGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaa < 1:1922647/150‑1 (MQ=255) tGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACaaa > 2:4338921/1‑150 (MQ=255) tCGTTTGTTTTTTTGTGTGGCTGTTTTTGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCa < 2:3965698/150‑1 (MQ=11) tCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑AACGTTAAAAAACCCTCCCCGCGGATTTTTCCGACAAGGGAGAGTGTTCACCCACAAACAACACATAAAACAAAATGCCCa > 1:3850336/1‑150 (MQ=14) tCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTAGC‑AAACTTAAAAAACCCTCCCCGCGGCATTTTGCTAAACGGGCGAGTGTTAAACGACAAAAAACAACaaaaaaaaaaatcccc > 1:196772/1‑144 (MQ=9) ggtttgatttgttGTCTGGCTGTTTTTGGGGGGGGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAg < 2:1811494/147‑1 (MQ=14) cGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCGTCGC‑AACGTTCAAATCCGCTCCCCGCGGATTTGTCCGACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAAAAAAAGGCCCAg > 2:4528974/1‑150 (MQ=255) ttttttttgtgtgGCTTTTTTTGGGGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTc < 1:5094492/143‑1 (MQ=11) gatttgatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTACCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACCACAGATAAAACAAAAGGCCCAGTCTTc > 2:790132/1‑150 (MQ=255) tatGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTTGGTCGC‑AAAGTTCAAATACGCACCCGGCGGATTTTTGATAATCGGGGGTGTGTTAACCCACAAACAACAGATAAAACAAAATGCCCAGTCTTCCGGCt > 1:1961349/2‑150 (MQ=14) aattcCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATcc > 1:3011117‑M2/6‑71 (MQ=255) tGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCt < 2:2149056/150‑1 (MQ=37) ggCTGTTTTGGGCGGGCGTCCGGCCCGCCCCCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTCCTCGGGCGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCtt < 1:3685338/150‑1 (MQ=11) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCtt < 2:849710/150‑1 (MQ=37) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACGGAGCCtt > 2:3012185/1‑150 (MQ=37) ggCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGC‑AACCTTCAAATCCGCTCCCGGCGGCTTTGTGCTACTCGGGAGAGTGTTGACCGACAAAAAAAAGATAAAAAAAAAGGCCCCGTCTTCCGCCGGAGCCtt > 2:3583518/1‑150 (MQ=11) cAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACACGGGAGAGTGTTCACCGACACACAACAGATAAAACAAAATGCCCACTCTTCCGACGGAGCCtttt > 2:3631731/1‑150 (MQ=11) cAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGAGTTGTCCGACTCGGGAGAGTGTTCACCGACAAACAACACATAAAACAAAAGGCCCAGTCTTCCGACTGAGGCgttt > 2:2680502/1‑150 (MQ=11) tttAGGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACACAAGGCCCAGTCTTCCGACTGAGCCTTTTGtt < 2:651248/150‑1 (MQ=255) tATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGtttt < 2:3267266/150‑1 (MQ=39) tGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGTGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTGTTGTTGTAt > 2:4962117/1‑150 (MQ=255) tGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTAGA‑AACGGTCAAATACGCTCCCGGCGGAGTTGTCATACGCGGGAGAGTGTTATCCGACAAACAACACAAAAAACAAAAGGCCCAGGATTCCGGCTGTGGCTTTTGTTTTAt > 2:144276/1‑150 (MQ=14) gggcgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGa < 2:1988792/150‑1 (MQ=39) cgTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGt < 1:1084743/150‑1 (MQ=40) tCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCt < 1:3817279/150‑1 (MQ=255) ccTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTg < 2:2885286/150‑1 (MQ=255) ccTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGGTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTg < 2:3026250/150‑1 (MQ=255) aCCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCt < 2:5148464/150‑1 (MQ=255) ccTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTAc < 2:3551789/150‑1 (MQ=255) ccGGGCCGTTGCTTCGC‑AACGGTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAACCCACAGATAAAACAAAAGGCCCCGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTActct < 2:4182916/150‑1 (MQ=255) cGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACtctc < 2:729390/150‑1 (MQ=255) gCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCGCAGTCTTCCGAGTGAGCCTTTTGTTTTATTTGATGTCTTGCAGTTCCCTACTATCGCa > 2:2353177/1‑150 (MQ=255) gCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCa > 2:3403055/1‑150 (MQ=255) ccGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCAt > 1:980398/1‑150 (MQ=255) ccGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTGTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCAt > 1:1230407/1‑150 (MQ=255) ccGGTGCGTCGC‑AACGTACAACTCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACACCAGAGAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCAt < 2:2803954/150‑1 (MQ=14) cGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATg < 2:2477121/150‑1 (MQ=255) cGTTGCTTCGC‑AACGTTCAAAACCGCTCCCGGCGTATTTGTCCTACTCGGGAGAGTGTACACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATg < 1:3566712/150‑1 (MQ=255) ttGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATggg > 1:13701/1‑150 (MQ=255) cTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGgag > 2:1584462/1‑150 (MQ=255) cTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGgag > 2:174228/1‑150 (MQ=255) ttCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGgaga > 1:4842337/1‑150 (MQ=255) ttCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACGCGGGAGAGTGTTCACCGACACACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGgaga < 2:3846607/150‑1 (MQ=255) | GCGTACGAGGGCATTTTTATCGCAGGTAATCCATTAATTGAATGTTAGTTCGAAAAGCAAAAAGGCCATCCTTTCGGATGGCCTTTCGCTTGATTTGATGTCTGGCAGTTTATGGCGGGCGTCCTGCCCGCCACCCTCCGGGCCGTTGCTTCGC‑AACGTTCAAATCCGCTCCCGGCGGATTTGTCCTACTCGGGAGAGTGTTCACCGACAAACAACAGATAAAACAAAAGGCCCAGTCTTCCGACTGAGCCTTTTGTTTTATTTGATGTCTGGCAGTTCCCTACTCTCGCATGGGGAGA > CP009273/3416517‑3416815 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |