mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP009273 | = 2871150 | 626 (2.150) | 6 (0.020) | 6/242 | NT | 1.2% | intergenic (+173/+778) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease |
| ? | CP009273 | 2871456 = | 477 (1.880) | intergenic (+479/+472) | iap/ygbF | aminopeptidase in alkaline phosphatase isozyme conversion/CRISPR adaptation ssRNA endonuclease | |||||
| * | ? | CP009273 | = 2811301 | 306 (1.050) | 12 (0.050) | 8/238 | NT | 4.3% | intergenic (‑82/+117) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| ? | CP009273 | 2811851 = | 268 (1.080) | noncoding (58/77 nt) | argV | tRNA‑Arg | |||||
| * | ? | CP009273 | = 776472 | 242 (0.830) | 3 (0.010) | 3/242 | NT | 1.6% | intergenic (+98/‑52) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| ? | CP009273 | 776679 = | 164 (0.650) | intergenic (+1/‑146) | lysY/lysZ | tRNA‑Lys/tRNA‑Lys | |||||
| * | ? | CP009273 | = 361823 | 363 (1.250) | 7 (0.030) +TTAATTAA |
7/262 | NT | 2.1% | coding (831/834 nt) | mhpR | mhp operon transcriptional activator |
| ? | CP009273 | 4033991 = | 346 (1.190) | noncoding (115/120 nt) | rrfA | 5S ribosomal RNA of rrnA operon | |||||
| * | ? | CP009273 | = 360286 | NA (NA) | 3 (0.010) +AATTC |
3/268 | NT | 1.3% | intergenic (‑220/+375) | lacZ/lacI | pseudogene, truncated/DNA‑binding transcriptional repressor |
| ? | CP009273 | 3416618 = | 242 (0.830) | intergenic (+65/+164) | yhdZ/rrfF | putative amino‑acid transporter subunit/5S ribosomal RNA of rrnD operon | |||||