New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP009273	= 361823	224 (1.010)	11 (0.050) +TTAATTAA	6/260	NT	5.3%	coding (831/834 nt)	mhpR	mhp operon transcriptional activator
	?	CP009273	4033991 =	194 (0.880)					noncoding (115/120 nt)	rrfA	5S ribosomal RNA of rrnA operon

GGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/361680‑361823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGGAA  >  CP009273/4033991‑4034023                                                                                                                                                 ||||||||                                  ggtAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAAT                                      <  1:3825889/146‑1     aaaGGTCTGATAAGAGACACCGGCATACTCTGCGACATATTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGTTGGTGCCAATTAATTAAA                                  <  2:4061921/146‑1          tcgGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTGTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAGAGGTTTTGCACCATGCGCTGGGGGCAATTAAGTCAAGGCgt                             >  1:4151840/4‑147           cttATAAGAGACACCGGCATACACTGCGACATCTTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATC                            <  2:3655804/146‑1              gtacGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATCCCGCGAAGGGTGTTGCTCCATTCGCTGGTGTCCAGTCATTAAAGGCATCAAA                         >  1:4209521/5‑149               tacGAGACACCGGCATACTCAGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACGCACTTCCGGGCGCTATCATGCCATACCCCGACAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAAT                        <  2:1905385/146‑1                       acaGGCATACTCTTCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAA                <  2:1265886/146‑1                         cgtCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAG              <  2:2525064/146‑1                         cgtCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAG              <  2:3721628/146‑1                         cgtCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAG              <  2:805415/146‑1                            cagACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCT           <  2:2101646/146‑1                             atcCTCAGCGACCTCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCTC          <  2:3811756/146‑1                               accCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCTCAG        >  1:433570/4‑149                                     CGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCACCATTCGATGGTGTCAATTAATTAAAGGCATCAAATAAAACGAAAGGCTCAGTCGana  <  2:1640010/149‑4                                                                                                                                                 ||||||||                                  GGGAAACGGTCTGATAAGAGACACCGGCATACTCTGCGACATCGTATAACGTTACTGGTTTCACATTCACCACCCTGAATTGACTCTCTTCCGGGCGCTATCATGCCATACCGCGAAAGGTTTTGCGCCATTCGATGGTGTCAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  CP009273/361680‑361823 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑AGGCATCAAATAAAACGAAAGGCTCAGTCGGAA  >  CP009273/4033991‑4034023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.