New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP009273 = 3385461221 (1.000)14 (0.080) 13/210 NT 8.4% noncoding (27/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences
?CP009273 3385736 = 138 (0.820)noncoding (302/308 nt) REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences REP245 (repetitive extragenic palindromic) element; contains 7 REP sequences

Only 100 of 299 total aligned reads displayed.

AGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAG  >  CP009273/3385314‑3385608
                                                                                                                                                   |                                                                                                                                                   
aGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCa                                                                                                                                                    >  1:688450/1‑149 (MQ=255)
aGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCa                                                                                                                                                    >  1:2376365/1‑149 (MQ=255)
 ggATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAg                                                                                                                                                   >  1:1409608/1‑149 (MQ=255)
   aTCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc                                                                                                                                                 >  1:4196462/1‑149 (MQ=255)
   aTCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGcc                                                                                                                                                 >  2:2110325/1‑149 (MQ=255)
         aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                           >  1:2727352/1‑149 (MQ=255)
         aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                           >  1:3085364/1‑149 (MQ=255)
         aaCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGt                                                                                                                                           <  2:4184067/149‑1 (MQ=255)
          aCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                          >  1:2461556/1‑149 (MQ=255)
          aCAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGtt                                                                                                                                          >  2:1872965/1‑149 (MQ=255)
            aaGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTAt                                                                                                                                        >  1:3545399/1‑149 (MQ=255)
             aGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCCGCCTACGGTTATg                                                                                                                                       >  2:3784012/1‑149 (MQ=255)
               tCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGtt                                                                                                                                     >  1:2149645/1‑149 (MQ=255)
               accTGCTGTTTGAGGCCGTTCGCCGCGAGCAAGTGTTAACCTCCCCGGTGTATACTCACCGTTTTTGCGACTCGTTAGTTTCTGCGGTAGTGGAATTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGtt                                                                                                                                     <  2:3594921/148‑1 (MQ=16)
                     tGTTTGAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGtt                                                                                                                               <  2:2679567/149‑1 (MQ=255)
                         tCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTa                                                                                                                           <  2:4248338/149‑1 (MQ=255)
                          cAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAg                                                                                                                          >  1:2991523/1‑149 (MQ=255)
                            ggCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTGATGTTCCGGTTTGTAGGc                                                                                                                        >  1:4049331/1‑149 (MQ=255)
                            ggCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTGAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGc                                                                                                                        >  1:4072020/1‑149 (MQ=255)
                             gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGcc                                                                                                                       <  1:1503199/149‑1 (MQ=255)
                                gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGa                                                                                                                    <  1:3128052/149‑1 (MQ=255)
                                   cgccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATaa                                                                                                                 <  2:2058552/149‑1 (MQ=255)
                                           gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATACGACGcaca                                                                                                         >  1:2158329/1‑149 (MQ=255)
                                           gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGcaca                                                                                                         >  1:279254/1‑149 (MQ=255)
                                             aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc                                                                                                       <  2:2395968/149‑1 (MQ=255)
                                             aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc                                                                                                       <  1:633098/149‑1 (MQ=255)
                                              aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg                                                                                                      >  2:1418465/1‑149 (MQ=255)
                                               ttGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGTATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGTTTGTTGGCCTGATAAGACGCACAGCGt                                                                                                     >  1:552429/1‑149 (MQ=255)
                                                tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc                                                                                                    >  1:2005709/1‑149 (MQ=255)
                                                tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc                                                                                                    <  1:823931/149‑1 (MQ=255)
                                                 gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGTTTGTAGGCCTGAGAAGACGCACAGCGTCg                                                                                                   >  1:3636170/1‑149 (MQ=255)
                                                 gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTGGTGGGCCTGATAAGACGCACCGCGTCg                                                                                                   >  2:4142633/1‑149 (MQ=255)
                                                  ttCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGc                                                                                                  >  2:4322302/1‑149 (MQ=255)
                                                     aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa                                                                                              >  1:1530017/1‑149 (MQ=18)
                                                     aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGAGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc                                                                                               >  2:3290343/1‑149 (MQ=255)
                                                       ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg                                                                                             <  1:713611/149‑1 (MQ=255)
                                                         aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGTTAAGACGCACAGCGTCGCATAAGGc                                                                                           >  1:3792285/1‑149 (MQ=255)
                                                         aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc                                                                                           >  2:1107367/1‑149 (MQ=255)
                                                             ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg                                                                                       <  2:3761136/149‑1 (MQ=255)
                                                              gTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACgc                                                                                      >  2:4097744/1‑148 (MQ=255)
                                                               ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGTGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                     <  2:1657529/149‑1 (MQ=255)
                                                               ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc                                                                                     >  1:3472354/1‑149 (MQ=255)
                                                               ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGGTATGTTCCGGTTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGc                                                                                     >  1:2969945/1‑149 (MQ=255)
                                                                  aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt                                                                                  >  1:4259541/1‑149 (MQ=255)
                                                                               tcagatctcgttaGTTACTGCAGTAGTCGAGTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaa                                                                     <  2:1190333‑M1/143‑81 (MQ=255)
                                                                               gtGCTACTCTTTTGTTAGTGCAGTCGCGGTTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTa                                                                     <  2:3183805/148‑1 (MQ=18)
                                                                                 gCTCCTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa                                                                   >  1:1264579/1‑149 (MQ=255)
                                                                                   tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCagcctacggttatgttctggctcgttggcctttggcaacgattatcctat                                                                                                   >  2:1304308‑M1/1‑65 (MQ=255)
                                                                                     cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGcc                                                               <  2:4293266/149‑1 (MQ=255)
                                                                                     cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGATAGTAAGCCAAATAATAAGAACACCATACCATCACCCAACCCAAGACGGATGCGGCGTAAACGcc                                                               >  1:3697955/1‑149 (MQ=21)
                                                                                       ctttagttaCTGCAGTAGAGTATTTTTTACGGCGGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGTTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCtt                                                             <  2:308170/147‑1 (MQ=255)
                                                                                        gttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTAAACGCCTTa                                                            >  2:2577103/1‑149 (MQ=255)
                                                                                            gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTGAACGCCCTATCCg                                                        >  1:1284721/1‑149 (MQ=255)
                                                                                            gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGGTAGTAGGCCTGAGGCGACGCACAACGTCGCAACAGCAACCGGCTGACCTAACCGCCGTAAACGACTAATCCg                                                        >  1:815748/1‑149 (MQ=18)
                                                                                               aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc                                                     <  2:352075/149‑1 (MQ=255)
                                                                                               aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt                                                    >  2:1533233/1‑149 (MQ=255)
                                                                                               aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGGTTGTTGGCCTTATAATACGGACAGCGTCGCATCTGGAAACGCCTGTCGGATGCGGCGTAATCGCCTTATCCGagc                                                     >  1:1364163/1‑147 (MQ=21)
                                                                                                      tAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtt                                              >  1:1021465/1‑149 (MQ=255)
                                                                                                         agGATTTTTTCCGGCGGCCGGATGCGGCGTGACCGCCCTAGCCCGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATg                                           <  2:1636194/149‑1 (MQ=17)
                                                                                                          ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCgaccta                                                                                                                                               >  1:413056‑M1/1‑42 (MQ=255)
                                                                                                          ggATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCTTATCCGACCTACGGTTATGt                                          >  1:2215835/1‑149 (MQ=255)
                                                                                                           gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt                                         >  2:1016754/1‑149 (MQ=255)
                                                                                                            aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc                                        >  1:877047/1‑149 (MQ=255)
                                                                                                            aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTGTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTCCGGTTATGTTc                                        >  2:4111395/1‑149 (MQ=255)
                                                                                                             ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                       >  1:3349808/1‑149 (MQ=255)
                                                                                                             ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCAACGGTTATGATcc                                       >  1:4245532/1‑149 (MQ=255)
                                                                                                             ttttttACGGCGGCCGGAGGCGGCGTGACCGCCCTACCCACCCTACGTTTATGTTCCGGTTGTTAGGCCTGATAAGCCGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc                                       <  2:2343565/149‑1 (MQ=17)
                                                                                                               ttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAGGGTTATGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt                                     <  2:2624983/149‑1 (MQ=255)
                                                                                                                      gCTGCCGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacactt                              <  1:417733‑M1/149‑120 (MQ=255)
                                                                                                                        tGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGTTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGcc                            <  1:3570924/149‑1 (MQ=255)
                                                                                                                          ccGGATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgtt                          <  2:2874055‑M1/149‑124 (MQ=255)
                                                                                                                           cGGTTGCGGCGTGAACGCCCTACCCAGCCTACGGTTTTGTTCGGGTTTGTCGGCCTGACACGCCGCACAGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa                         <  2:27840/149‑1 (MQ=14)
                                                                                                                            ggtggcggcgTCCCCGCCCTACCCAGCCTCGGTTTTTGTTCGGTTTTGTCGGCCTTATAAGCCCCCCCGCGTCGCATCCGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt                        <  1:1872988/145‑1 (MQ=9)
                                                                                                                            ggATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttga                        <  1:3809879‑M1/149‑126 (MQ=255)
                                                                                                                            ggATGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttga                        >  1:1792949‑M1/1‑24 (MQ=255)
                                                                                                                            ggATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTCTGTTCCGTTTGTAGGCCTGAt                        >  1:1474342/1‑149 (MQ=255)
                                                                                                                             gATGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTCGGCCTGATAAGACGCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa                       <  1:2856074/149‑1 (MQ=255)
                                                                                                                             gATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa                       >  1:2093684/1‑149 (MQ=255)
                                                                                                                              aTGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatt                      <  2:1509090‑M1/149‑128 (MQ=255)
                                                                                                                              aTGCGGCGTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatt                      <  1:2332356‑M1/149‑128 (MQ=255)
                                                                                                                                gcggcgTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa                    <  2:3967423/149‑1 (MQ=255)
                                                                                                                                    cgTGACCGCCCTACCCAGCCTCCGTTTATGTTCCGGTTTGTCGGCCTGATAACACCCACAGCGTCGAATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGca                <  2:3343870/149‑1 (MQ=14)
                                                                                                                                    cgTGAACGCCCTCTCCgacctacggttatggtctggctcgttggcctgtggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcgga                <  2:1897335‑M1/149‑134 (MQ=255)
                                                                                                                                     gttcaCGCCCTCTCCAGCCTAGGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACTGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac               <  2:838514/145‑1 (MQ=14)
                                                                                                                                     gTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggat               >  2:366877‑M1/1‑15 (MQ=255)
                                                                                                                                     gTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggat               <  1:3667507‑M1/149‑135 (MQ=255)
                                                                                                                                     gTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggat               <  1:1533233‑M1/149‑135 (MQ=255)
                                                                                                                                     gTGAACGCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggat               <  1:1011502‑M1/149‑135 (MQ=255)
                                                                                                                                      tGAACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTTGGCGTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca              <  2:3443774/149‑1 (MQ=14)
                                                                                                                                        accGCCCTATCCAGCCTAGGTTTTTGTTCCGTTGTGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc            <  2:3998322/147‑1 (MQ=14)
                                                                                                                                        aaCCCCATACCCAGCATAGGTTTTTGTTCGGGTTTTTTGGCATTATAAGCCGCACCGCGTCGAATCTGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc            <  1:2634688/149‑1 (MQ=11)
                                                                                                                                          cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt          >  1:596477/1‑149 (MQ=255)
                                                                                                                                           gCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtcca         <  2:3027513‑M1/149‑141 (MQ=255)
                                                                                                                                           gCCCTATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtcca         <  1:1207972‑M1/149‑141 (MQ=255)
                                                                                                                                              cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa      >  1:460658/1‑149 (MQ=255)
                                                                                                                                               tagccAGCCTACTGTTTTGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGGCGCATCTGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt     <  2:541429/146‑1 (MQ=14)
                                                                                                                                               tATCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcgg     >  1:2563977‑M1/1‑5 (MQ=255)
                                                                                                                                                aTCCgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcgga    >  2:1329820‑M1/1‑4 (MQ=255)
                                                                                                                                                aTCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTGTGTAGGCCTGATAAGACGCACAGCGACGCATc    >  2:3542695/1‑149 (MQ=255)
                                                                                                                                                  ccgacctacggttatgttctggctcgttggcctttggcaacgattatcctatgagattggggcaattacgcgccctcgtcaaatcattgcgctttttctttacgcggttggcgcaacacttcgttgatttgcggatcgtccagcggacc  >  2:2864354‑M1/1‑2 (MQ=255)
                                                                                                                                                   |                                                                                                                                                   
AGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAG  >  CP009273/3385314‑3385608

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.