Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP009273 124,092 A→C 5.8% intergenic (+18/‑307) aceF → / → lpd pyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/lipoamide dehydrogenase, E3 component is part of three enzyme complexes

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP009273124,0920AC 5.8% 536.0 / 2.8 198intergenic (+18/‑307)aceF/lpdpyruvate dehydrogenase, dihydrolipoyltransacetylase component E2/lipoamide dehydrogenase, E3 component is part of three enzyme complexes
Reads supporting (aligned to +/- strand):  ref base A (95/86);  new base C (4/13);  total (99/99)
Fisher's exact test for biased strand distribution p-value = 3.97e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 202 total aligned reads displayed.

AGTTCGTGCCGCGTCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTC  >  CP009273/123944‑124240
                                                                                                                                                    |                                                                                                                                                    
agTTCGTGCCGCGTCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCaa                                                                                                                                                      <  2:348734/149‑1 (MQ=255)
 gTTCGTGCCGCGTCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAAc                                                                                                                                                     <  2:3955435/149‑1 (MQ=255)
         cgcgTCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCt                                                                                                                                             <  2:1269408/149‑1 (MQ=255)
            gTCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCtttt                                                                                                                                          >  1:1709533/1‑149 (MQ=255)
             tCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCttttt                                                                                                                                         >  2:753006/1‑149 (MQ=255)
               tGATGCTGCCTATTTCTCTCTCCTTCGACCACCGCTTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGAAATTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTc                                                                                                                                       <  1:3383671/149‑1 (MQ=255)
               tGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTc                                                                                                                                       >  2:4205837/1‑149 (MQ=255)
                gATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCAGCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCt                                                                                                                                      >  2:2812513/1‑149 (MQ=255)
                 aTGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTg                                                                                                                                     >  1:3851455/1‑149 (MQ=255)
                  tgctgcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTgg                                                                                                                                    <  2:2389399/149‑1 (MQ=255)
                  tgctgcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTgg                                                                                                                                    >  2:796129/1‑149 (MQ=255)
                     tgcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTaa                                                                                                                                 >  2:4307417/1‑149 (MQ=255)
                     tgcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTaa                                                                                                                                 >  2:2087044/1‑149 (MQ=255)
                      gcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAAt                                                                                                                                <  2:3712292/149‑1 (MQ=255)
                      gcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAAt                                                                                                                                <  1:2465879/149‑1 (MQ=255)
                      gcCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACCGCCGGCTTTTTTCTGGTAAt                                                                                                                                <  2:2154699/149‑1 (MQ=255)
                         gATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAAtctc                                                                                                                             >  2:4090784/1‑149 (MQ=255)
                          aTTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCa                                                                                                                            >  2:2973113/1‑149 (MQ=255)
                          aTTTCTCACACCTCCGACCCCCGCTTGATCGCCGGGGCTTATGGTGCCCGTTTCATTACCAACATTAACAACACGCTGTCTTACATTCGCCGTCTGGTGATGTAAGAAAAAGAGCCGCCCCACCGGCCGGCTTTTTTCTGGTAATCTCa                                                                                                                            <  1:768257/149‑1 (MQ=255)
                                  ctcCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGTTGTAATTAAAAGCGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTa                                                                                                                    <  1:1504069/149‑1 (MQ=255)
                                   tcCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTAt                                                                                                                   <  2:4229461/149‑1 (MQ=255)
                                     cTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTg                                                                                                                 >  2:356124/1‑149 (MQ=255)
                                         gACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGt                                                                                                             <  2:1153537/149‑1 (MQ=255)
                                         gACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGt                                                                                                             >  1:3527333/1‑149 (MQ=255)
                                           ccaccGCGTGATCGACGGTGCTGATGGTGCCCGTGTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGtta                                                                                                           <  2:3601957/149‑1 (MQ=255)
                                                gcgTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCACCGGCCGGCTGTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGc                                                                                                      >  1:2824855/1‑149 (MQ=255)
                                                gcgTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATGGAGGTTATTAGc                                                                                                      >  2:1780776/1‑149 (MQ=255)
                                                   tGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGaa                                                                                                   >  1:558507/1‑149 (MQ=255)
                                                     aTCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATa                                                                                                 <  2:2808613/149‑1 (MQ=255)
                                                     aTCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTATGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATa                                                                                                 <  1:2735081/149‑1 (MQ=255)
                                                        gACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGAc                                                                                              <  1:1763446/149‑1 (MQ=255)
                                                         aCGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACa                                                                                             <  1:217829/149‑1 (MQ=255)
                                                           ggTGCTGTTGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACaaa                                                                                           <  1:2737672/149‑1 (MQ=255)
                                                              gCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCg                                                                                        >  2:4266833/1‑149 (MQ=255)
                                                                    ggTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGcc                                                                                  >  1:3212732/1‑149 (MQ=255)
                                                                       gCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGtt                                                                               <  1:3749130/149‑1 (MQ=255)
                                                                        cccGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGttt                                                                              <  2:152995/149‑1 (MQ=255)
                                                                          cGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTttgt                                                                            >  1:2913699/1‑149 (MQ=255)
                                                                          cGTTTCATAACCATCATTAACAACACGCTGTCTGACATGCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCCACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTttgt                                                                            <  1:461629/149‑1 (MQ=255)
                                                                           gTTTCATTACCATCATTAACCACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTttgtt                                                                           <  2:1440763/149‑1 (MQ=255)
                                                                           gTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTttgtt                                                                           <  2:1440778/149‑1 (MQ=255)
                                                                           gTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTttgtt                                                                           <  2:3224765/149‑1 (MQ=255)
                                                                           gTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTttgtt                                                                           <  2:3222347/149‑1 (MQ=255)
                                                                             ttCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGACTAGACAAATCGGTTGCCGTTtgttgt                                                                         >  2:3499426/1‑149 (MQ=255)
                                                                              tCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTgttgtt                                                                        <  2:710087/149‑1 (MQ=255)
                                                                                aTTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCACCGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTa                                                                      >  1:358613/1‑149 (MQ=255)
                                                                                aTTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTCATCTCATGAATGTCTTGAGGTTATTAGCGAATCGACAAATCGGTTGCCGTTTGTTGTTTa                                                                      >  2:3929637/1‑149 (MQ=255)
                                                                                aTTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTa                                                                      >  1:358443/1‑149 (MQ=255)
                                                                                 ttACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTaa                                                                     >  2:1937464/1‑149 (MQ=255)
                                                                                 ttACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTaa                                                                     >  1:486714/1‑149 (MQ=255)
                                                                                  tACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAATGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTaaa                                                                    >  2:1549102/1‑149 (MQ=255)
                                                                                  tACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTaaa                                                                    >  1:1279792/1‑149 (MQ=255)
                                                                                  tACCATCATAAACACCCCGCTGTCTGACATCCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTaaa                                                                    <  1:3976971/149‑1 (MQ=255)
                                                                                     catcatTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAAt                                                                 >  1:2767210/1‑149 (MQ=255)
                                                                                      atcatTCACCACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAAtt                                                                <  2:1081927/149‑1 (MQ=255)
                                                                                      atcatTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCACCGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAAtt                                                                <  2:490124/149‑1 (MQ=255)
                                                                                          ttACCAACACGCTGTCGGCCTTTCGCCGTCTGGTGATGTAAGTAAACGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTa                                                            <  1:2202191/149‑1 (MQ=255)
                                                                                          ttAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTTTTa                                                            >  1:1885041/1‑149 (MQ=255)
                                                                                            aacaacACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAAc                                                          <  1:2517127/149‑1 (MQ=255)
                                                                                            aacaacACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAAc                                                          >  2:316704/1‑149 (MQ=255)
                                                                                               aaccCGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAAt                                                       <  2:3822099/149‑1 (MQ=255)
                                                                                               aacaCGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAAt                                                       <  2:4017375/149‑1 (MQ=255)
                                                                                                 cacGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAAttt                                                     <  1:2009062/149‑1 (MQ=255)
                                                                                                  acGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCCTGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTTTTATCAAtttt                                                    >  1:2952268/1‑149 (MQ=255)
                                                                                                   cGCTGTCTGACATTCGCCGTCTGGTTATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTg                                                   <  1:1599345/149‑1 (MQ=255)
                                                                                                   cGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTg                                                   >  2:2302625/1‑149 (MQ=255)
                                                                                                     cTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTa                                                 >  1:704809/1‑149 (MQ=255)
                                                                                                     cTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTa                                                 >  1:2859526/1‑149 (MQ=255)
                                                                                                       gTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTaaa                                               <  1:1577682/149‑1 (MQ=255)
                                                                                                       gTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATAAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTaaa                                               >  2:3727378/1‑149 (MQ=255)
                                                                                                            aCATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCCACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATAcc                                          <  1:590486/149‑1 (MQ=255)
                                                                                                            aCATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCACCGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATAcc                                          <  2:1537406/149‑1 (MQ=255)
                                                                                                            aCATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATAcc                                          <  1:1004784/149‑1 (MQ=255)
                                                                                                            aCATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATAcc                                          <  1:3671999/149‑1 (MQ=255)
                                                                                                            aCATTCGCCGTCTGGAGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATAcc                                          <  2:4190332/149‑1 (MQ=255)
                                                                                                             cATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCg                                         <  2:4207785/149‑1 (MQ=255)
                                                                                                             cATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAAAAATTTTGTAAAATACCg                                         >  1:2347318/1‑149 (MQ=255)
                                                                                                               ttCGCCGTCTGGTGAGGTAAGTAAAAGAGCCGGCCCACCGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGAc                                       >  1:573986/1‑149 (MQ=255)
                                                                                                                  gCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGa                                    >  1:996904/1‑149 (MQ=255)
                                                                                                                  gCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGa                                    >  2:2310172/1‑149 (MQ=255)
                                                                                                                      tCTGTTGATGTAAGTAAAAGAGCCGGCCCTACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACATATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGa                                <  1:4294562/149‑1 (MQ=255)
                                                                                                                        tGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATAACGACGGATAGAAc                              >  1:2609317/1‑149 (MQ=255)
                                                                                                                         ggTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATAGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTTTTAAATAACGACGGATAGAACg                             >  1:3643152/1‑149 (MQ=255)
                                                                                                                           ttttGTAAGTAAAAGAGCCGGCCCAACGGCGGGCTTTTTTCTGGTAATCTAATGAATGTATTGAGGTTATTAGCGAATAGACAAATGGGTTGCCGTTTGTTGTTTAAAATTTGTTAACATTTTTGTAAAATACCGACGGATAGAACGAc                           <  1:2302625/146‑1 (MQ=255)
                                                                                                                            taTGTAAGTAAAAGAGCCGGCCAAACGGCCGGCTTTTTTCTGGTAATCTCATGAATTTATTGAGTTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTTTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGAcc                          <  2:1086020/148‑1 (MQ=255)
                                                                                                                             aTGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGGTTGTTGTTTAAAAATTGTTAACAAATTTGTAAAATACCGACGGATAGAACGAccc                         >  1:4066454/1‑149 (MQ=255)
                                                                                                                              tGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCg                        >  1:2053764/1‑149 (MQ=255)
                                                                                                                               gtaagtaaAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGAAAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCgg                       >  1:1191548/1‑149 (MQ=255)
                                                                                                                                 aagtaaAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCggtg                     >  1:3218291/1‑149 (MQ=255)
                                                                                                                                  agtaaAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCggtgg                    >  1:3928043/1‑149 (MQ=255)
                                                                                                                                      aaaTAGCCGGCCCACCGGCCGGATTTTTTCTGTTAATATCATTATTGTATTTTGGTTTTTAGCTAATAGAAAAATCGGTTGCCGTTTGTTTTTTAAAAATTGTTAAAATTTTTGTAAAATACCGACGGATAGAACGACCCggtggtggt                <  1:1980339/149‑1 (MQ=255)
                                                                                                                                       aaGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCggtggtgggt               >  2:3024290/1‑147 (MQ=255)
                                                                                                                                       aaGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGtt               <  2:2773358/149‑1 (MQ=255)
                                                                                                                                       aaGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGtt               >  2:857921/1‑149 (MQ=255)
                                                                                                                                           gCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTTTAAAATAACGACGGATAGAACGAACCCGTGGTGGTTAggg           >  1:2648351/1‑149 (MQ=255)
                                                                                                                                           gCCGGCCCAACGGCCGGCTTTATTCTGGTAATCTCATGAATGTATTGAGGTTATTATCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGAACCGGTGGTGGTTAggg           >  1:3415533/1‑149 (MQ=255)
                                                                                                                                            ccGGCCCACCGGCCGGCTTTTTTCTGTTAATCTCATGACTGTATTGAGGTTATTAGCGAATAGACAAAGCGGTGGCCGTTTGTTGTTTAAAAATTGTAAAAAATTTTTTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGt          <  2:2575048/149‑1 (MQ=255)
                                                                                                                                                cccAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTa      <  2:2763029/149‑1 (MQ=255)
                                                                                                                                                 ccAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAATATAACGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTAc     >  2:2328131/1‑149 (MQ=255)
                                                                                                                                                   aaCGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACtt   >  1:3492421/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
AGTTCGTGCCGCGTCTGATGCTGCCGATTTCTCTCTCCTTCGACCACCGCGTGATCGACGGTGCTGATGGTGCCCGTTTCATTACCATCATTAACAACACGCTGTCTGACATTCGCCGTCTGGTGATGTAAGTAAAAGAGCCGGCCCAACGGCCGGCTTTTTTCTGGTAATCTCATGAATGTATTGAGGTTATTAGCGAATAGACAAATCGGTTGCCGTTTGTTGTTTAAAAATTGTTAACAATTTTGTAAAATACCGACGGATAGAACGACCCGGTGGTGGTTAGGGTATTACTTC  >  CP009273/123944‑124240

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: