| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 450,333 | A→T | 8.6% | intergenic (+88/‑256) | bolA → / → tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 450,333 | 0 | A | T | 8.6% | 552.3 / 7.4 | 187 | intergenic (+88/‑256) | bolA/tig | stationary‑phase morphogene, transcriptional repressor for mreB; also regulator for dacA, dacC, and ampC/peptidyl‑prolyl cis/trans isomerase (trigger factor) |
| Reads supporting (aligned to +/- strand): ref base A (48/114); new base T (11/2); total (71/116) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.36e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 188 total aligned reads displayed.
AGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGG > CP009273/450185‑450480 | ggTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGAtt < 1:964531/149‑1 (MQ=255) gTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGAttt < 1:2681584/149‑1 (MQ=255) gTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGAttt < 1:524550/149‑1 (MQ=255) aGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTgcgc < 2:3754144/149‑1 (MQ=255) aGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTATGGGtttttggg > 1:2414562/1‑145 (MQ=255) ggACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCt < 2:2672302/149‑1 (MQ=255) ggACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCt < 2:1355631/149‑1 (MQ=255) ggACACCGTATTTGCCTCTCCTCCCGGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCt < 1:3487057/149‑1 (MQ=255) cacCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTGGTTTTTTGTGGGTTTTgggggttt > 1:2347636/1‑142 (MQ=255) tCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTGTGTTTTGTCTGGATTTTGCGCTTTTTGccc > 2:1685817/1‑149 (MQ=255) tGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGCTTTTGCGCTTTTTGCCCAGcc > 2:4126241/1‑148 (MQ=255) gCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCAt > 2:1777203/1‑149 (MQ=255) ccTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTCTGGGTTTTTCGCTTTTTTGCCAGCAtt > 1:3530901/1‑149 (MQ=255) ctcctcCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAg < 2:621044/149‑1 (MQ=255) ctcctcCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGGTGTTTTGTCTGGTTTTTGCGCTTTTTGCCCAGCATTCAg > 2:3444166/1‑149 (MQ=255) tccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTTTGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑a < 1:9138/149‑1 (MQ=255) tccCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCAGACG‑a > 2:586146/1‑149 (MQ=255) tGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTTTGGTGATTTTTCGCTTTTTTACCACCCATCAGAAC‑AAAAt > 2:1198060/1‑149 (MQ=255) tGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAAt < 2:1825699/149‑1 (MQ=255) tGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAAt < 2:247664/149‑1 (MQ=255) gTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAAtt < 2:4162441/149‑1 (MQ=255) gTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTGTGGATTTTGGGCTTTTTTCCCCGCATTAAGACG‑AAAATTGcc > 2:4138047/1‑149 (MQ=255) gAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCgg < 2:2750953/149‑1 (MQ=255) gCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTTTGGATTTTTGGCTTTTTTGCCAGCAATAAGACGAAAAATTGCCgggg > 1:3860875/1‑149 (MQ=255) gCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGGTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCCGCATTAAGACG‑TAAAGTGCCCgggc > 2:1632440/1‑148 (MQ=255) aGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAAt < 1:1576044/149‑1 (MQ=255) gtaaGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCCGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAAtt < 1:3993718/147‑1 (MQ=255) ggAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTTTGTGGGTTTTTGGCTTTTTGCCCCGCATTGAGACG‑CAAATTGGCCGGGACtt > 1:2855056/1‑149 (MQ=255) cATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGaa < 2:265937/149‑1 (MQ=255) cATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGaa < 2:265320/149‑1 (MQ=255) aTCGCTTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGaaa < 1:1521109/149‑1 (MQ=255) aTCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTTCCCAGCATTCCGACG‑AAAATTGCCCGGGAATTGTGaaa > 2:3108714/1‑149 (MQ=255) tctcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGATAAAGTTTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGaaaa < 1:3670833/146‑1 (MQ=255) gcgTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTGTGGATTTTTCGGATTTTTGCCAAAATACAAACG‑AAAAATGCCCGCGAAATGTTaaaaaa > 1:1747323/1‑149 (MQ=255) cgTAAAAACGAATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGATAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAAt < 1:4136807/149‑1 (MQ=255) tAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGTTTTTTCGCTTTTTTCCCAGCATTCAGACG‑AAAAATGCCCGGGAATTGTGAAAAAATAc > 2:602828/1‑149 (MQ=255) tAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATAc < 2:3781392/149‑1 (MQ=255) aaaCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGGTGTGTTTTGTGTGGGTTTTTCGCTTTTTGCCCAGCAATCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATAcgcg > 2:2671270/1‑149 (MQ=255) aaCGCATTTGCAACTGTCGGCGCTTTTCCATTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGa < 1:2660617/149‑1 (MQ=255) aCGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTTTGTGGGTTTTTGGCTTTTTTCCCAGCATTCAGACG‑AAAATTGCCCGGGAAATGTTTAAAAAAAagcgca > 1:696091/1‑147 (MQ=255) cGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACa < 1:4252441/149‑1 (MQ=255) cATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAATATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAgc < 2:178412/149‑1 (MQ=255) aaCTTTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACTGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGACCAGAATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAAt < 2:3242039/149‑1 (MQ=255) gTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCAATCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAAAACGCGACAGCGCG‑CAATaaac > 2:4300127/1‑147 (MQ=255) gTCGGCGCTTTTCCAGTATGGTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAAcc < 2:3496595/149‑1 (MQ=255) cGGCGCTTTTCCAGTATGTTGCTAATGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGt < 1:2831473/149‑1 (MQ=255) gcgcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTTTGTGGATTTTTGGGTTTTTTCCCCGCAATCAGACGAAAAATGGCCCGGCAATT‑TGTAAAAATAAGCGACAGCGCGCCAAAAACCGta > 1:3163178/1‑148 (MQ=255) gcgcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTTTTTTTTATTGATTTTTCGCTTTTTTCCCACCATTCAGACC‑AAAAATTCCCGGGAATTTTGAAAAAATAAGCGACAGCGCG‑CAATaaaactta > 2:4100634/1‑143 (MQ=255) ctcTTTCCCAGTATTTTGCTAAAGATTTTATCAAAAACGGCCTGCGGGCCGTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGATTTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTtct < 1:1823838/147‑1 (MQ=255) cgcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTtct < 2:1112067/149‑1 (MQ=255) tcTTTGCCTGTTTGTGGATAAAGATTTTATTAAAAACGGCCGGCGGGCCGTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTtctc < 1:4134578/148‑1 (MQ=255) gcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTCTGGATTTTTAGCTTTTTGACCACCATTAAGACG‑AAAAATGGCCCGGAATTGTTAAAAAAAAAGCGACAGACCG‑CCATAAACCTtcta > 2:1961527/1‑148 (MQ=255) gcTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGCATTTGCGCTTTTTGCCCAGCATTCACACG‑AAAAATGCCCGGGACTTGTGAAAAAATACGCGACCGCGCG‑CAAAAACCGTtctc > 2:3826442/1‑149 (MQ=255) tacctttATGTTCATAAATATTTTATTAAAAACGGCCTGCGGGCAGTTTTGTTTTGTCTGTATTTTGCGCTTTTTGCCCAGAATTCAGACT‑AAATTTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACt < 1:3771942/143‑1 (MQ=255) aGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTAAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATa < 2:1562068/149‑1 (MQ=255) aGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTATGGATTTTGCGCTTTTTTCCCAGCATTAAGACG‑AAAATTGGCCGGGAATTTTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATa > 2:2117739/1‑149 (MQ=255) gTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATaa < 1:330062/149‑1 (MQ=255) gTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTGTTTTGTCTGGATTTTTCGCTTTTTTCCCAGCATTCAGAAG‑AAAAATTCCCGGGAATTGTGAAAAAATAAGCGACAGCGCG‑CAAAAACCGTTCTCGACTCAAAAAAGt > 2:712319/1‑149 (MQ=255) ttGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTTTATTGATTTTTCGCTTTTTGCCCACCATTAAGACG‑AAAAATTCCCGGGAATTGTTAAAAAATAAGCGACCGCGCG‑CAAAAAACCTTCTCGACTCAAAAAAGTg > 2:2616320/1‑149 (MQ=255) ttGATAATGTTTTTATTAAAACGGGCGTGGGGGCGGTTTTGTTTGGTGTGTTTTTTGGGCTTTTTGCCCCGCATTCAGACG‑AAATTTGCCGGGGATTTGTTAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTg < 1:3248556/149‑1 (MQ=255) tGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGa < 1:1291164/149‑1 (MQ=255) gCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTGGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGAt < 2:558966/149‑1 (MQ=255) gCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTGTTTTTTTGTGTGGATTTTTGGCTTTTTTGCCACCCTTCAGTCGCAAAATGGCCGGGGCATTTTTAAAAAA‑AAGCGACCGCGCG‑CACAAACCGTTGGAGACTCATgaaaaggat > 2:2537791/1‑144 (MQ=255) tAAAGATTTTATTAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGc < 1:3463434/149‑1 (MQ=255) tAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGc < 1:2772854/149‑1 (MQ=255) aaaGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGcc < 2:3498044/149‑1 (MQ=255) aaaGATTTTAGTAAAAACGGCCGGCGGGCGTTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACT‑AAAATTGCCCGGGAATTGTTAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGcc < 1:2163715/149‑1 (MQ=255) aGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGc < 1:1186598/149‑1 (MQ=255) ttttATGAAAAACGGCCTGCGGGCCGTTTTTTTTTTTCTGGATTTTTCGCTTTTTTCCCAGCATTAAGACG‑AAAATTGCCCCGGAAATGTTAAAAAAAAAGCGACACCGCC‑CAAAAACCGTTCTCGACTCATAAAAGTGATGCCGCaat > 2:589427/1‑149 (MQ=255) aaaaCGGCCTGCGGGCCGTTTTTTTTTGTCTGTATTTTGCGCTTTTTGCCCAGCATTCAGACT‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCcgc < 1:2530323/149‑1 (MQ=255) aCGGCCTGCGGGCCGTTTTTTTTTTTCTTGGTTTTTGGGTTTTTTCCCAGCAATCAGACC‑AACATTTCCCGGGTAGTGTGTAAAAAAAAGCGTCAGCGCG‑CACTAAACGGTCTCGCAGCCTAAAAGGGATGCCGGGCTAATTCCGCGtg > 2:1508206/1‑148 (MQ=255) cGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc < 1:3233104/149‑1 (MQ=255) cGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTGGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTcc < 1:3435800/149‑1 (MQ=255) ggCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCt < 2:3285835/149‑1 (MQ=255) ggCCGGCGGGCCGTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCt < 1:3988583/149‑1 (MQ=255) gCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTa < 2:1029650/149‑1 (MQ=255) ccTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAt < 2:3421303/149‑1 (MQ=255) ccTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAt < 2:3883310/149‑1 (MQ=255) cTGCGGGCTGTTTTTTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGTATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAtt < 1:2460556/149‑1 (MQ=255) cTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTAtt < 1:996300/149‑1 (MQ=255) gCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTg < 2:2352895/149‑1 (MQ=255) gCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATg < 2:49973/149‑1 (MQ=255) ccGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGc < 1:3114267/149‑1 (MQ=255) tttttttttgTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt < 1:1119811/149‑1 (MQ=255) ttttgttttgTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt < 2:990873/149‑1 (MQ=255) ttttgttttgTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt < 2:990758/149‑1 (MQ=255) ttttgttttgTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCttt > 2:2849413/1‑149 (MQ=255) tttgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTc > 2:2157525/1‑149 (MQ=255) ttgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCg > 1:1808316/1‑149 (MQ=255) tgttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCgg < 1:1346712/149‑1 (MQ=255) gttttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCggg < 2:2390916/149‑1 (MQ=255) tttgtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgat < 2:2995302/149‑1 (MQ=255) gtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAGTGCTTTCGGgatgat < 2:4271128/149‑1 (MQ=255) gtCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGgatgat < 2:1660630/149‑1 (MQ=255) tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAATATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGAtt < 1:1352368/149‑1 (MQ=255) tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGAtt > 2:1709983/1‑149 (MQ=255) tCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGAtt < 2:2946647/149‑1 (MQ=255) cTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTc < 1:219147/149‑1 (MQ=255) tGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCt > 1:860614/1‑149 (MQ=255) tGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCt > 2:2415432/1‑149 (MQ=255) | AGGGTTGCAGGACACCGTCTTTGCCTCTCCTCCCTGTCGTGGAGCAGGAAGCATCGCGTAAAAACGCATTTGCAACTGTCGGCGCTTTTCCAGTATGTTGCTAAAGATTTTATGAAAAACGGCCTGCGGGCCGTTTTGTTTTGTCTGGATTTTGCGCTTTTTGCCCAGCATTCAGACG‑AAAATTGCCCGGGAATTGTGAAAAAATACGCGACAGCGCG‑CAATAACCGTTCTCGACTCATAAAAGTGATGCCGCTATAATGCCGCGTCCTATTTGAATGCTTTCGGGATGATTCTGG > CP009273/450185‑450480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |