| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,263,315 | T→C | 6.0% | intergenic (+354/+260) | yhaC → / ← rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,263,315 | 0 | T | C | 6.0% | 548.1 / 17.5 | 186 | intergenic (+354/+260) | yhaC/rnpB | pentapetide repeats‑related protein/RNase P, M1 RNA component |
| Reads supporting (aligned to +/- strand): ref base T (40/126); new base C (5/5); total (53/133) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.26e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.53e-01 | |||||||||||
Only 100 of 188 total aligned reads displayed.
CCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAG > CP009273/3263168‑3263463 | cgcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTaa < 2:2023370/149‑1 (MQ=255) cgcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTaa < 2:2811552/149‑1 (MQ=255) gcATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTaaa < 2:3240028/149‑1 (MQ=255) cATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTaaaa < 1:394569/149‑1 (MQ=255) aTCCGGCATGAAGAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTaaaaa < 2:2538257/149‑1 (MQ=255) ccGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAAcc < 1:3284898/149‑1 (MQ=255) ccGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAAcc < 1:4034755/149‑1 (MQ=255) ccGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATGCCCC‑TCCAAAAGTAAAAAcc > 1:1949561/1‑149 (MQ=255) cGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGCGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGCAAAAAccc < 2:4328050/149‑1 (MQ=255) tGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACCGGCATTCATATTTATGCCCC‑TACAAAAGTAAAAACCCCCCGa > 1:475259/1‑149 (MQ=21) aTAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGc < 2:3677767/149‑1 (MQ=255) aTAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGc < 1:3925824/149‑1 (MQ=255) aTAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGc < 2:1438761/149‑1 (MQ=255) tAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCCTTCAACTTTATTCCCC‑GCCCAAAGTAAAAAACCGCCCAAGCg > 1:428484/1‑149 (MQ=18) aaaGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCgg < 1:3672748/149‑1 (MQ=255) aaaGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCgg < 1:4016307/149‑1 (MQ=255) aaGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCggg < 1:1003975/149‑1 (MQ=255) gcgcACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGAGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGCAAAAACCCGCCGAAGCGGGtt > 2:1012971/1‑149 (MQ=255) cgcACTCAACAAGCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGCAAAAACCCGCCGAAGCGGGttt < 2:2315021/149‑1 (MQ=255) tcACTCAACAATCTGAAACCAGCCGGAACTGTTTATTAAGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGTTATAGTGTCGTGGACAGTCATTCTTCTTTCTGCCCC‑TCCAAAATTAAAAACCCGCCGAAGCGGGtttt < 1:622295/148‑1 (MQ=18) gcACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGtttt < 2:624265/149‑1 (MQ=255) aCTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTa < 2:947731/149‑1 (MQ=255) aacaaTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa < 1:2125944/149‑1 (MQ=255) aacaaTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa < 1:2125915/149‑1 (MQ=255) aacaaTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTa < 2:3179609/149‑1 (MQ=255) acaaTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaa > 1:2859138/1‑149 (MQ=255) cactcagAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTaaa < 2:3540965/143‑1 (MQ=255) aTCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTGTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATGCCCC‑TCCAAAAGTAAAAAACCGCCGAAGCGGGTGTTGGCGTaaaca > 1:3370931/1‑147 (MQ=17) cTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAg < 1:982562/149‑1 (MQ=255) gAAACCCGCCGGCACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCTCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAATAGTAAAATCCCGCCGAAGCGGGTTTTTACGTAAAACAGGt < 2:4097689/149‑1 (MQ=255) gAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACCGTCAATAATATTTATGCCCCACCCAAAAGAAAAAACCC‑CCGCAGCGGGGTTTTTCGTAAAAAAGGt > 1:3613759/1‑149 (MQ=17) aaaCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTg < 2:4025557/149‑1 (MQ=255) aCCCGCCGGAACTGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGaa < 2:1532292/149‑1 (MQ=255) aCCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGGTGTGGGGTGGGGAGTGTGGCGTGGACAGTCATTCATCTTTCTGCCCC‑ACAAAAAGGAATAACCCGCCGCAGCGGGTTTTTACGTGAATCAGGTGag > 2:205442/1‑148 (MQ=14) cgccgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACt < 2:1358274/149‑1 (MQ=255) cgGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc < 2:1494889/149‑1 (MQ=255) gAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTAATCATTATGCCCC‑ACCAAAACTAAAAAACCCCCCAAGCGGGTTGTTTCATAAAACACGTGtaaaaaaacc > 1:2610364/1‑142 (MQ=17) aCGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTATGCCCC‑TCCAAAATAAAAAAACCGCCGAAGCGGGTTTTTAAGTAAATCAGGTGAAACTTACCGAt > 2:1871597/1‑149 (MQ=14) cgttttAGTACGTACATCAGGTAAACCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATa < 2:3092830/146‑1 (MQ=255) ggTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATaa < 2:2775572/149‑1 (MQ=255) gTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAg < 1:163517/149‑1 (MQ=255) ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGcc < 1:2106326/149‑1 (MQ=255) ttattaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGcc < 1:246199/149‑1 (MQ=255) attaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTGTTTTGGGTATAGTGTCGTGGACAGTCATTATACTTTCTTCCAC‑TACAAAATTAAAAACCAGCCGAAGCGGGTTTTTTCGGAAAACAGGTGGAACTGTCCGATTAGCCgg > 2:1715964/1‑148 (MQ=14) ttaCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGct < 1:931470/149‑1 (MQ=255) aCGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctt > 2:265574/1‑148 (MQ=255) cGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttc < 2:2751026/149‑1 (MQ=255) aCATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGctttcttt < 1:1926213/149‑1 (MQ=40) aTCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGTGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTg < 1:4229321/149‑1 (MQ=38) tCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTgg < 1:2231284/149‑1 (MQ=38) cAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAGGTGAAACTGACCGATAAGCCGCTTTCTTTTggg < 1:3183934/149‑1 (MQ=17) aGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTATTCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGCATCGGGTTTTTACGTAAAACAGGTGAAACGGACCGATAAGCCGCTGTGTTTGGGGt > 2:1743823/1‑149 (MQ=11) ggTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGAc > 2:1721934/1‑125 (MQ=38) ggTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGta < 1:147171/149‑1 (MQ=37) gTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGtat < 1:1118505/149‑1 (MQ=37) aaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAACAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCTTTGGGGTATAg < 2:157649/149‑1 (MQ=255) aaaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAg < 2:872020/149‑1 (MQ=35) aaaCTGACCTATAAGCCTCTTTCTTTTGGTTATAGTGTCGTGGAAAGTCATTAATCTTTCTTCCCA‑TACTAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTTACCGATAAGCCGCTTTCTTTTGGGtatatt < 1:2919401/149‑3 (MQ=11) aaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:2921288/149‑1 (MQ=35) aaaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgt < 1:559493/149‑1 (MQ=35) aaCTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAgtg < 1:3886380/149‑1 (MQ=35) gACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTGATTCATATTTCATCCCC‑ACCAAAAATAAAAAACCCCCGAATCGGGTTTTTACGTAAAAAAGGTGAAACTGACCGGTAAGCCGCATTATTTTTGGTTTATTGTCGt > 1:2972607/1‑149 (MQ=11) cGATAAGCCGCTTTCTTTTTGGTATAGTGTCGTGGACAGTCTTTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGCAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGa < 2:1935790/149‑1 (MQ=255) cGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGa < 2:1935837/149‑1 (MQ=37) gATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGAc < 2:845536/149‑1 (MQ=37) aTAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACa < 1:2341382/149‑1 (MQ=37) aTAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACa < 1:301444/149‑1 (MQ=37) tctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCt < 2:1798389/149‑1 (MQ=37) tctttTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCt < 2:1616704/149‑1 (MQ=37) tttGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTc < 2:1074791/149‑1 (MQ=37) ttGGTTATAGTGTCGTGGACAGTCATTCAACTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCt < 2:3575387/149‑1 (MQ=255) ggTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGcc < 1:809393/149‑1 (MQ=37) gTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGccc < 2:2988395/149‑1 (MQ=37) tataGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGcccc < 1:1972742/149‑1 (MQ=37) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCt < 2:2229735/149‑1 (MQ=37) ataGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCt < 1:1349055/149‑1 (MQ=37) taGTGTCGTGGACAGTCAGTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTc < 2:3762451/149‑1 (MQ=37) cGTGGACAGTCTTTAATATTTCTTCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAg < 1:1902139/149‑1 (MQ=255) cGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAg < 2:806941/149‑1 (MQ=37) tGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCa < 2:1722348/149‑1 (MQ=37) ggACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCaa > 1:2518350/1‑149 (MQ=37) gtcagtcaTCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAcc < 1:2847082/149‑1 (MQ=37) gTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAAcc < 1:1366123/149‑1 (MQ=37) attcttCTTTCTGCCCC‑TCAAAAATTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc < 1:798465/149‑1 (MQ=255) attcatATTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAATCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACccgc < 2:499268/149‑1 (MQ=255) atCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGGAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGGATAGTGTCGTGGGCAGGCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGaa > 1:2779727/1‑149 (MQ=255) cTTTCTGCCAC‑TCCAAAATTAAAAACCCGCCGTAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGc < 2:109379/149‑1 (MQ=255) tttCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCAACTTTATGCCCCAACAAAATCAAAAACCCGCCGCAGCg > 2:135501/1‑149 (MQ=11) tttCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCGTTCTGTTGGGTATAGTGTCGTGGACCGGGATTCATCTTTCAGCCACTCCAAAAGCAAAAACCCCACGAAGCg > 2:335946/1‑149 (MQ=11) tCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGTTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 2:238600/149‑1 (MQ=37) acTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCggg < 1:3715907/148‑1 (MQ=37) cTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCAACATTGTGCCCCACCAAAAGCAAAAACCCGCCGAAGCgggg > 1:1847106/1‑148 (MQ=255) cTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCAATCATCTTTCTGCCCCACCAAAAGCAAAAACCCGCCGAAGCgggg > 1:4126692/1‑148 (MQ=255) cccc‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGtttt > 2:1878795/1‑149 (MQ=37) ccc‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGttttt < 2:2922501/149‑1 (MQ=37) ccc‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTAGTGGGCAGTCAATCATGGTTGAGCCCCAACAAAAGCAAAAAACCCCCCAACCGGGgtttt > 1:3303249/1‑149 (MQ=11) cc‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGGATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTa > 2:1989295/1‑149 (MQ=37) aGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACCGTCATTCATCTTTCTGCCCCGCCAACAGCAAAAACCCGCCGCAGCGGGGTTTTTCGttggcc > 1:3079456/1‑144 (MQ=11) tAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAg < 1:2820159/149‑1 (MQ=38) tAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTAAGTAAATCAg > 1:2749121/1‑149 (MQ=17) | CCGCATCCGGCATGAATAAAGCGCACTCAACAATCTGAAACCCGCCGGAACGGTTTATTACGTACATCAGGTAAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCC‑TCCAAAAGTAAAAACCCGCCGAAGCGGGTTTTTACGTAAAACAGGTGAAACTGACCGATAAGCCGCTTTCTTTTGGGTATAGTGTCGTGGACAGTCATTCATCTTTCTGCCCCTCCAAAAGCAAAAACCCGCCGAAGCGGGTTTTTACGTAAACCAG > CP009273/3263168‑3263463 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |