| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 3,385,479 | C→G | 10.4% | intergenic (‑92/+338) | tldD ← / ← yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 3,385,479 | 0 | C | G | 10.4% | 612.9 / 9.7 | 214 | intergenic (‑92/+338) | tldD/yhdP | putative peptidase/DUF3971‑AsmA2 domains protein |
| Reads supporting (aligned to +/- strand): ref base C (98/83); new base G (2/24); total (107/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.96e-06 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 216 total aligned reads displayed.
CTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAT > CP009273/3385331‑3385624 | tGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCg > 1:2351020/1‑149 (MQ=255) cAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGGTTGTAg > 1:631095/1‑149 (MQ=255) ggCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTGAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGc > 1:4072020/1‑149 (MQ=255) gCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGcc < 1:1503199/149‑1 (MQ=255) gTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGa < 1:3127127/149‑1 (MQ=255) cgccgcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGTTTGTAGGCCTgttta > 1:2041118/1‑145 (MQ=255) gcTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACg > 1:557344/1‑149 (MQ=255) tAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGca < 2:1975445/149‑1 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATACGACGcaca > 1:2158329/1‑149 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGcaca > 1:279699/1‑149 (MQ=255) gCAATTGTTCACTTACCAGGTTAAGACTCAGCGTGTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTGTTTCCGGCTGCCGGCTGCGGCGTGAACGCCCTATCCAGCCTACGGGTATGTTCCGGGTAGTAGGCCTGATAAGACGcaca > 2:433181/1‑149 (MQ=37) aaTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc < 2:2395968/149‑1 (MQ=255) aTTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCg > 2:1418465/1‑149 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc < 1:823931/149‑1 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc > 1:2005709/1‑149 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc > 1:4179387/1‑149 (MQ=255) tGTTCACTTACCAGGTTAAGACTCATCGTTTTAGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTc < 2:3313411/149‑1 (MQ=255) gTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTGGTGGGCCTGATAAGACGCACCGCGTCg > 2:4142633/1‑149 (MQ=255) tCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAATACGCACAGCGTCGCa > 2:3984942/1‑149 (MQ=255) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTCGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCATCCTACGGTTATGTTCAGCTTTGTAGGCCTCATAAGACGCACAGAGTCGCAt > 1:1243577/1‑149 (MQ=37) cACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt > 1:2978145/1‑149 (MQ=255) aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc > 1:3708090/1‑149 (MQ=255) aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa > 1:1530017/1‑149 (MQ=18) aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGAGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc > 2:3290343/1‑149 (MQ=255) ttACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 1:1951313/1‑149 (MQ=255) ttACCAGGTTAAGACTCATCGTTTGTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:2741169/149‑1 (MQ=255) ttACCAGGTTAAGACTCAACGTGTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 1:2152957/149‑1 (MQ=255) tACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc < 2:1530017/149‑1 (MQ=18) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc > 2:1107367/1‑149 (MQ=255) aCCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc > 1:3792407/1‑149 (MQ=255) cAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCaa < 2:3233444/149‑1 (MQ=255) ggTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACg < 2:3761143/149‑1 (MQ=255) ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGc > 1:3472354/1‑149 (MQ=255) ttAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGGTATGTTCCGGTTTGTAGGCCTGATAATACGCACAGCGTCGCATCAGGCAACGGc > 1:2969945/1‑149 (MQ=255) aaGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg > 2:1387905/1‑149 (MQ=255) aGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt > 1:4259541/1‑149 (MQ=255) aGACTAATAGTTTTTGATACTCGTTAGTTACTGCAGTTGAGGATTTTTTACGGCTGCCGTAGGCGGCGTTAACGCCCTATCCTGCCTAGGGTTTTGTTCCGTTTTGTTGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGt < 2:2850406/149‑1 (MQ=21) cATGGTTTTTGCTACTCGTTATTTACTGCAGTAGAGTTTTTTTTCCGGGTGCGGGATGCGGCGTGAACGCCCTCTCCAGCCTACGGTTTTGTTCGGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCCGGCAACGGCTGTCGGAt < 2:2295014/149‑1 (MQ=21) tCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCACATCAGGCAACGGCTGTCGGATgc < 2:362900/149‑1 (MQ=255) gtGCTACTCTTTTGTTAGTGCAGTCGCGGTTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTa < 2:3183805/148‑1 (MQ=18) gCTCCTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTaaa > 1:1264579/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg > 2:4237483/1‑149 (MQ=255) tACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACg > 2:1304313/1‑149 (MQ=255) aCTCGTTTGTTACTGCAGTAGTGGATTTTTTCCGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGc < 2:4287249/149‑1 (MQ=255) cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGcc < 2:4293266/149‑1 (MQ=255) cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGATAGTAAGCCAAATAATAAGAACACCATACCATCACCCAACCCAAGACGGATGCGGCGTAAACGcc > 1:3697955/1‑149 (MQ=21) cTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGTTTGTAGGCCTGATAAAACGCAAAGCGTCGCAGATGGCAACGGCTGACGGTTCCGGCGCAAACGcc > 1:837601/1‑149 (MQ=37) ctttagttaCTGCAGTAGAGTATTTTTTACGGCGGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGTTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCtt < 2:308170/147‑1 (MQ=255) ttagttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTAt > 1:3645549/1‑149 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:709843/1‑149 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCg > 1:815760/1‑149 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTGAACGCCCTATCCg > 1:815747/1‑149 (MQ=255) gttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGACGGATGCGGCGTGAACGCCCTATCCg > 1:1284721/1‑149 (MQ=255) ttaCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGa > 1:420523/1‑149 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGTTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGAcc < 2:352075/149‑1 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCt > 2:1533233/1‑149 (MQ=255) aCTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCAGGGTTGTTGGCCTTATAATACGGACAGCGTCGCATCTGGAAACGCCTGTCGGATGCGGCGTAATCGCCTTATCCGagc > 1:1364163/1‑147 (MQ=21) gcttttgagGATTTTTTACGGCGGCCGGATGCGGCGTGAACGCCCTAACCAGCCTAGGGTTATGTTCGGGTTTGTTGGCGTGATACGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTAc < 2:2996911/143‑1 (MQ=18) tAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtt > 1:1021465/1‑149 (MQ=255) tAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGtg > 1:1455634/1‑148 (MQ=255) agagGATTTTTTACGGCTGCCGGAGGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTa < 2:4311464/149‑1 (MQ=255) gcggATTTTTTCCGGCTGCGGGAGGCGGCTTGACCGCCCTATCCAGCCTCCGGTTTTTTTCGGTTTTGTAGGCCTTATAAGACGCACCGCGTCGCATCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 1:318175/147‑1 (MQ=17) gagTATTTTTTCCGGCGGCGGGATGCGGCGTGAACGCCATCACCCGCATACGGTTTTGTTCGGTTTTGTAGGACTTATAAGACGCACAGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTAt < 1:2788485/149‑1 (MQ=14) agGATTTTTTCCGGCGGCCGGATGCGGCGTGACCGCCCTAGCCCGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATg < 2:1636194/149‑1 (MQ=17) gATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGtt > 2:1016754/1‑149 (MQ=255) aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTc > 1:877052/1‑149 (MQ=255) aTTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTGTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCGTATCCGACCTCCGGTTATGTTc > 2:4111395/1‑149 (MQ=255) ttttttCCGGGGGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAGGGTTTTGTTCCGGTTTGTAGGCCTTATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 2:2343569/149‑1 (MQ=17) ttttttCCGGCTGCCGGTGGCGGCGTGAACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc < 2:3852688/149‑1 (MQ=255) ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCGGGATTGTAGGCCTCAGAACACGCACAGCTTCGCATCTGGCCACGGCTGGCGGCTGCGGCGTTAACGCCGTATCCGGCCTACGGTGTTGTTcg > 1:3553130/1‑148 (MQ=25) ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc > 1:2281602/1‑149 (MQ=255) ttttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTcc > 1:4245548/1‑149 (MQ=255) ttttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTAGGGTTATGTTCCGGTTTGTAGGCCTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGt < 2:2624983/149‑1 (MQ=255) tttACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGtt < 2:3534620/149‑1 (MQ=255) gggtggcggcgTCACCGCCCTCCCCAGCCTCGGGTTTTGTTCGGGTTTGTCGGCCTGATAAGCCGCACAGCGTCCCATCTGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa < 1:3408927/144‑1 (MQ=14) cGGTTGCGGCGTGAACGCCCTACCCAGCCTACGGTTTTGTTCGGGTTTGTCGGCCTGACACGCCGCACAGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa < 2:27840/149‑1 (MQ=14) cGGATGCGGCGTGAACGCCCTATCCAGCATACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGa < 2:1716672/149‑1 (MQ=255) ggttGCGGCGTGAACGCCCTATCCAGCCTAGGTTTTTGTTCGGTTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt < 2:2596267/146‑1 (MQ=14) ggtgggggcgTCACCCCCCTACCCCCCCTAGGTTTATGGTCGGTTTTGTAGGCATTATACGCCGCACCGCGGCGCACCAGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAt < 1:1872965/143‑1 (MQ=2) gttGCGGGGTGACCGCCATACCCCCCCTCCGGTTATTTTCGGGTTGGTCGGCCTGATAAGACGCACAGCGCCGCATAAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa < 1:669545/147‑1 (MQ=14) gATGCGGCGTGACCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTCGGCCTGATAAGACGCACCGCGTCGCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATa < 1:2856074/149‑1 (MQ=255) gcggcgTGAACCCCCTAGCCCCCCTAGGTTTTTGTTCCGTTTTGTTGGCCTGATAAGCCGCACAGCGGCCCATCCGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGa < 1:4055527/149‑1 (MQ=14) cgTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGca < 2:3343918/149‑1 (MQ=255) gttcaCGCCCTCTCCAGCCTAGGGTTTTGTTCCGGTTTGTAGGCCTGATAAGACGCACTGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcac < 2:838514/145‑1 (MQ=14) tGAACGCCCTATCCAGCCTACGGTTTTGTTCCGGTTTGTTGGCGTTATAAGACGCACAGCGTCGCATCTGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 2:3443774/149‑1 (MQ=14) gtaaCGCCCTCACCAGCATCGGTTTTTGTTCGGTTTTGTTGGCCTTATACGCCGCACCGGGTCGAACCCGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 1:2995644/147‑1 (MQ=2) accGCCCTATCCAGCCTAGGTTTTTGTTCCGTTGTGTCGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc < 2:3998322/147‑1 (MQ=14) aaCCCCATACCCAGCATAGGTTTTTGTTCGGGTTTTTTGGCATTATAAGCCGCACCGCGTCGAATCTGCCCACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGc < 1:2634688/149‑1 (MQ=11) cGCCCTATCCAGCCTAGGTTTTTGTTCGGTTTTGTTGGCCTGATAAGACGCACCGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt < 1:2116470/149‑1 (MQ=14) cGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGt > 1:596477/1‑149 (MQ=255) cccTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCg > 1:1645500/1‑149 (MQ=255) cTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCAGTTTGTAGGCCTGATAAGACGCACAGCGTCGCa > 1:460658/1‑149 (MQ=255) tagccAGCCTACTGTTTTGTTCCGGTTTGTTGGCCTGATAAGACGCACAGCGGCGCATCTGGAAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCAt < 2:541429/146‑1 (MQ=14) cccAGCCTACGTTTATGTTCCGGTTTGGCGCCCTGATACTACGCACAGCGGCGCCTCAGGCAACGGCTGTCGGAGGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCa < 2:2634547/148‑1 (MQ=14) ccAGCCTACGTTTATGTTCCGTTTTGTAGGCCTGATAAGACGCACCGCGTCGCATCAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 2:2063799/149‑1 (MQ=255) ccACCCTAGGTTTTTGTTCGGTTTTGTCGGCCTTATACGACGCACCGCGACGCAACAGCCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg < 1:243141/149‑1 (MQ=11) aGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGc > 1:366032/1‑149 (MQ=38) gCCTACGGTTATGGTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCCTCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCa < 2:3553436/149‑1 (MQ=255) tACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGAAAAGACGCACAGCGTCGCATCAGGCAACg > 1:3934138/1‑149 (MQ=37) ttCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAt > 1:3615829/1‑149 (MQ=35) | CTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGAT > CP009273/3385331‑3385624 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |