| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | CP009273 | 4,361,085 | A→C | 9.3% | N82H (AAC→CAC) | groL → | Cpn60 chaperonin GroEL, large subunit of GroESL |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP009273 | 4,361,085 | 0 | A | C | 9.3% | 549.9 / 5.1 | 205 | N82H (AAC→CAC) | groL | Cpn60 chaperonin GroEL, large subunit of GroESL |
| Reads supporting (aligned to +/- strand): ref base A (103/76); new base C (2/24); total (105/100) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.31e-07 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 215 total aligned reads displayed.
CCAAAAGGCCGTAACGTAGTTCTGGATAAATCTTTCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTGAAGAACT > CP009273/4360938‑4361233 | ccAAAAGGCCGTAACGTAGTTCTGGATAAATCTTTCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCaaa > 2:459680/1‑149 (MQ=255) cAACAGGCCGTAACGTAGTTCTGGATAAATCTGTCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAac < 2:1980603/149‑1 (MQ=255) aaGGCCGTAACGTAGTTCTGGATAAATCTTTCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAacgac > 1:2647053/1‑149 (MQ=255) tAGTTCTGTATAAATCTTTCGGTGCACCGACCATCACAAAAGATGGTGTTTCCGTTGCTCGTGAAATCTAACTGGAAGAAAAGTTCGAAAATATGGGTGCGCAGATGGTTAAAGAAGTTGCCTCTAAACCAAACGACGCTGCAGGCGAc < 2:4126657/149‑1 (MQ=255) aGTTCTGGATAAATCTTTCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACg > 1:1975196/1‑149 (MQ=255) ttCTGGATAAATCTTTCGGTGCCCCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCACACGACGCTGCTGGCGACGGt > 2:2579688/1‑149 (MQ=255) aTAAATCTTTCGGTGCACCGACCATCACCAAAGTTGTTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATTTGGGTGCGCAGATGGTGAAACAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTaccacc < 2:3931950/149‑1 (MQ=255) aaaTCTTTCGGTGCACCGACAATCACCAACTTGGGTGTTTCCTTTGCTCGTGAAATCGAACTGTAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTTAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACcaccac < 2:2752611/149‑1 (MQ=255) tttCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCaa > 1:3680617/1‑149 (MQ=255) tttCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCaa > 1:2596103/1‑149 (MQ=255) tttCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCaa > 1:243740/1‑149 (MQ=255) ttgggggCACCGACCATCCCCATTTTGGGTGTTTCGGTTGCCCGTGAAATCTAAGTGGACTACATGTTGTAAATTTTGGTTGCGAAGTTGGTTAACTTTGTGGCCTCTAAAGAAAACGACGCTGCAGGCGACGGTACCACCACTGCAAc < 2:3276785/143‑1 (MQ=255) tCGGTGCACCGACCATCACCAAAGAGGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGACGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAAcc < 2:1765396/149‑1 (MQ=255) ggTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGt > 2:3367762/1‑149 (MQ=255) ggCACCGACCAACACCAATGTTGGTGTTTCCGTTGCTCGTTAAATCGAACTGGAATAAAAGTTCTAAAATATGGGTGCGCAGTTGTTTAAAGAAGTGGCCTCTAAACCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTAc < 2:37585/148‑1 (MQ=255) cGACAATCACCAATTTTGTTGTTTCCGTTGCTCTTTAAATCGAACTGGAAGACAAGTTCGAAATTATGGGTGCGCTTTTGTTGAAATATGTTGCATATAAAGAAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCt < 2:404217/149‑1 (MQ=255) gACCAACACCAAAGTTGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACATGTTCGAAAATATGGGGGCGCAGATGGTGAAAGATGTTGCCTCTAACGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTc < 2:1241609/149‑1 (MQ=255) caccaccCCCAAATTTGGGTTTGCCGTTGCTCTTCAAACCGAACGGTAACACATGTTCGAAAATTTGGGTGCGCAGATGGTGAAAGAAGTGGCCTCTAAACCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTc < 1:934204/148‑1 (MQ=255) aCCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCa > 1:3097070/1‑149 (MQ=255) aCCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCa > 1:3096762/1‑149 (MQ=255) aTCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACACGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGc > 2:4303552/1‑149 (MQ=255) aTCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGAGACGGTACCACCACTGCAACCGTACTGGCTCAGGc > 2:2130875/1‑149 (MQ=255) acacaAAAGAGGTTGTTTCCTTTGCTCGTGAAATCGAACTGGAAGACAAGTACGAAAATATGGGTGCGCAGATGGTGAAAGATGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCt < 2:3415182/148‑1 (MQ=255) cACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTa > 1:3394968/1‑149 (MQ=255) ccAAAGTTGGTGTTTCCGTTGCTCTTTAAATCGAACTGTAAGACATTTTCTAAAATTTGGGTGCGCAGTTGGTGAAATATGTTGCATCTAAACCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTatc < 1:2022370/149‑1 (MQ=255) ccAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTatc > 1:1277343/1‑149 (MQ=255) ccAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTatc > 1:1276062/1‑149 (MQ=255) aaaGATGGTGTTTCCGTTGCTCGTGAAATAGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGAACTGGCTCAGGCTatcat > 2:1314716/1‑149 (MQ=255) aaGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTatcatc > 1:4201048/1‑149 (MQ=255) aaGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTatcatc > 1:3791797/1‑149 (MQ=255) gttGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCAc < 2:1371455/147‑1 (MQ=255) gagggTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACATGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCAc < 2:1741389/146‑1 (MQ=255) tttCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGt > 1:49901/1‑149 (MQ=255) tttCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGAGGGTGAAAGAAGTTGCCTCTAACGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGt < 2:1660010/149‑1 (MQ=255) ttCCGTTGCTCGTGAAATCGACCTGGAATACAAGTTCTAAAATATGGGTGCGCAGATGGTGAAATAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTc < 2:246685/149‑1 (MQ=255) ccGTTGATTGTTAAATCGAAGTGTAATAAATGTTATAAAATTGGGGTGCGCTGTTGTTTAAATATTTTGCCTCTAACCCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTg < 1:1450200/149‑1 (MQ=255) ttGCTCGTTAAATCGAACTGTAAGACAAGTCCTAAAATCGGGGGGCGCTGATGGTGAAAGATGTGGCCTCTAACCCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGaaa < 1:4159268/149‑1 (MQ=255) tggCTCTTTAAATCTAACTGTAAGAAAATTTCTAAAATTGGGGTGCGCAGATGGTCAACTAAGTGGCATATAAACAAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGaaa < 1:2674692/147‑1 (MQ=255) cGTTAAATCGAACTGTAAGAAAATTTCGAAAATTTGGGTGCGCATTTGGTGAAAGATGTTGCCTATAAAGAAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGt < 2:1497147/149‑1 (MQ=255) cGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCACTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGt < 2:2153521/149‑1 (MQ=255) ttGAAATCGAAGTGGACGAAACTTTCTAAAATAGGGGTGCGCTGATGGTGAAAGATTTTGCCTCTACACCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGtt < 2:1176875/148‑1 (MQ=255) taaaTCGACCGGTAACACATTTTCTAAAATCGGGGGGCCCTGATGGTTAAAGATGTTGCCAATAAACCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTtgc < 1:3280335/148‑1 (MQ=255) aTCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTtgctgc > 1:2494744/1‑149 (MQ=255) aTCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTtgctgc > 1:1563208/1‑149 (MQ=255) cGACCTGGAAGACAAGTTCGAAAATATGGGGGCGCAGTTGGTGAAAGATGTTGCCGCCACCGCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCgg < 2:31521/149‑1 (MQ=255) gAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCggg > 1:623485/1‑149 (MQ=255) gAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCggg > 1:999499/1‑149 (MQ=255) gAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCggg > 2:3121184/1‑149 (MQ=255) cTGGAAGACAAGTTCGAACATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGACGGTCTGAAAGCTGTTGCTGCGGGcct > 1:1686454/1‑147 (MQ=255) cTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCAt > 1:3863391/1‑149 (MQ=255) cTGGAAGACAAGTGCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCAt > 1:3123236/1‑149 (MQ=255) atgacttgTTCGAAAATTGGGGTGCGCTGATGTTCAAAGACGTTCCCTCAAACCCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAAc < 1:78017/142‑1 (MQ=255) aaGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAAc > 1:1058213/1‑149 (MQ=255) aGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAAcc < 2:347926/149‑1 (MQ=255) cAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGa > 1:3478875/1‑149 (MQ=255) gTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATgg > 1:1867519/1‑149 (MQ=255) ttCGAAAATTGGGGGGCGCCGTTGGTGAAAGAAGTTGCCTCTACCGCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGa < 1:3052925/149‑1 (MQ=255) ttCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTGGCCTCTAACGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGa < 1:294006/149‑1 (MQ=255) cGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAACGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGAcc < 2:487270/149‑1 (MQ=255) gAAAATCGGGGTGCGCAGTTGGTGAAAGATGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCt < 1:3967758/149‑1 (MQ=255) gAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCt > 1:1356582/1‑149 (MQ=255) gAAAATATGGGTGCGAAGATGGTCAAATATGTTGCCTCTAAACCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCt < 2:1434877/149‑1 (MQ=255) aaaaTATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTg > 2:551761/1‑149 (MQ=255) aaTATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGaa > 1:882513/1‑149 (MQ=255) atatGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGaaa > 1:3251161/1‑149 (MQ=255) atatGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGaaa > 2:2307729/1‑149 (MQ=255) ttgggggGCGCCTATGTTTAAAGACGTGCCCTATAAACCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAAc < 1:3267673/146‑1 (MQ=255) tGGGTGCGCAGTTGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGt < 1:2811169/149‑1 (MQ=255) ggggTGCGCAGATGGTGAAAGAAGTGGCCTCTAACGCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGt < 1:3541868/148‑1 (MQ=255) gggTGCGCAGAGGGTGAAAGAAGTTGCCTCTAAACCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTg < 2:1096176/149‑1 (MQ=255) gcgcAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTAt > 2:2922299/1‑149 (MQ=255) cAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGa > 2:1819634/1‑149 (MQ=255) aGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGAc > 2:660405/1‑149 (MQ=255) gATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACa > 1:1076414/1‑149 (MQ=255) tGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACaaa > 2:228688/1‑149 (MQ=255) ggTGAAAGAAGTTGCCTCAAAAGCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAg < 1:17639/149‑1 (MQ=255) gttaaaTAAGTGGCCTCTAACGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGc < 1:4062187/146‑1 (MQ=255) gTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGc < 2:1276062/149‑1 (MQ=255) tGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCg > 1:1486695/1‑149 (MQ=255) aagaagTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGtt < 2:3431464/149‑1 (MQ=255) aagaagTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGtt > 1:3601169/1‑149 (MQ=255) agaagTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTa < 2:2144418/149‑1 (MQ=255) agaagTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTa > 2:2833538/1‑149 (MQ=255) agaagTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTa > 2:2832388/1‑149 (MQ=255) taagTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTAc < 2:4098279/148‑1 (MQ=255) gaagTTGCCTCTAAAGCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTAc < 2:1923820/149‑1 (MQ=255) agTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCg > 2:2784380/1‑149 (MQ=255) ttGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCt < 2:3093549/149‑1 (MQ=255) gCCTCTAAAGAAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGc < 2:434837/149‑1 (MQ=255) tctAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGt > 1:3715066/1‑149 (MQ=255) tctAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGt > 1:2708121/1‑149 (MQ=255) aaaGCACACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTga < 1:3892242/149‑1 (MQ=255) aaaGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTga < 2:2688594/149‑1 (MQ=255) aaGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTgaa > 2:418711/1‑149 (MQ=255) aGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTgaag > 1:2204237/1‑149 (MQ=255) gCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTgaaga > 1:430283/1‑149 (MQ=255) aaaCGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTGAAGAAc > 1:233682/1‑149 (MQ=255) aaaCGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTGAAGAAc < 2:2000765/149‑1 (MQ=255) aaaCGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTGAAGAAc > 2:1207497/1‑149 (MQ=255) aaCGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTGAAGAACt > 2:1791739/1‑149 (MQ=255) | CCAAAAGGCCGTAACGTAGTTCTGGATAAATCTTTCGGTGCACCGACCATCACCAAAGATGGTGTTTCCGTTGCTCGTGAAATCGAACTGGAAGACAAGTTCGAAAATATGGGTGCGCAGATGGTGAAAGAAGTTGCCTCTAAAGCAAACGACGCTGCAGGCGACGGTACCACCACTGCAACCGTACTGGCTCAGGCTATCATCACTGAAGGTCTGAAAGCTGTTGCTGCGGGCATGAACCCGATGGACCTGAAACGTGGTATCGACAAAGCGGTTACCGCTGCAGTTGAAGAACT > CP009273/4360938‑4361233 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |